83 results on '"Muhammad Usman Tariq"'
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2. Heteroscedasticity effects as component to future stock market predictions using RNN-based models
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Aida Nabilah Sadon, Shuhaida Ismail, Azme Khamis, and Muhammad Usman Tariq
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Medicine ,Science - Published
- 2024
3. Harnessing the power of AI: Advanced deep learning models optimization for accurate SARS-CoV-2 forecasting.
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Muhammad Usman Tariq, Shuhaida Binti Ismail, Muhammad Babar, and Ashir Ahmad
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Medicine ,Science - Abstract
The pandemic has significantly affected many countries including the USA, UK, Asia, the Middle East and Africa region, and many other countries. Similarly, it has substantially affected Malaysia, making it crucial to develop efficient and precise forecasting tools for guiding public health policies and approaches. Our study is based on advanced deep-learning models to predict the SARS-CoV-2 cases. We evaluate the performance of Long Short-Term Memory (LSTM), Bi-directional LSTM, Convolutional Neural Networks (CNN), CNN-LSTM, Multilayer Perceptron, Gated Recurrent Unit (GRU), and Recurrent Neural Networks (RNN). We trained these models and assessed them using a detailed dataset of confirmed cases, demographic data, and pertinent socio-economic factors. Our research aims to determine the most reliable and accurate model for forecasting SARS-CoV-2 cases in the region. We were able to test and optimize deep learning models to predict cases, with each model displaying diverse levels of accuracy and precision. A comprehensive evaluation of the models' performance discloses the most appropriate architecture for Malaysia's specific situation. This study supports ongoing efforts to combat the pandemic by offering valuable insights into the application of sophisticated deep-learning models for precise and timely SARS-CoV-2 case predictions. The findings hold considerable implications for public health decision-making, empowering authorities to create targeted and data-driven interventions to limit the virus's spread and minimize its effects on Malaysia's population.
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- 2023
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4. Ensemble learning for multi-class COVID-19 detection from big data.
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Sarah Kaleem, Adnan Sohail, Muhammad Usman Tariq, Muhammad Babar, and Basit Qureshi
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Medicine ,Science - Abstract
Coronavirus disease (COVID-19), which has caused a global pandemic, continues to have severe effects on human lives worldwide. Characterized by symptoms similar to pneumonia, its rapid spread requires innovative strategies for its early detection and management. In response to this crisis, data science and machine learning (ML) offer crucial solutions to complex problems, including those posed by COVID-19. One cost-effective approach to detect the disease is the use of chest X-rays, which is a common initial testing method. Although existing techniques are useful for detecting COVID-19 using X-rays, there is a need for further improvement in efficiency, particularly in terms of training and execution time. This article introduces an advanced architecture that leverages an ensemble learning technique for COVID-19 detection from chest X-ray images. Using a parallel and distributed framework, the proposed model integrates ensemble learning with big data analytics to facilitate parallel processing. This approach aims to enhance both execution and training times, ensuring a more effective detection process. The model's efficacy was validated through a comprehensive analysis of predicted and actual values, and its performance was meticulously evaluated for accuracy, precision, recall, and F-measure, and compared to state-of-the-art models. The work presented here not only contributes to the ongoing fight against COVID-19 but also showcases the wider applicability and potential of ensemble learning techniques in healthcare.
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- 2023
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5. IoT based battery energy monitoring and management for electric vehicles with improved converter efficiency.
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Ravi Samikannu, Abid Yahya, Muhammad Usman Tariq, Muhammad Asim, and Muhammad Babar
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Medicine ,Science - Abstract
Given the recent trends in the MPPT converters in PV systems, which have been researched extensively to improve design, modified closed-loop converter technology based on SoC is presented here. This paper aims to provide detailed information on the modern-day solar Maximum Power Point Tracking (MPPT) controller and Battery Management System (BMS). Most MPPT controller examination researched in the past is suitable only for fixed-rated battery capacity, which limits the converter capability and applications. The proposed paper uses the distributed energy management control technique to dispatch multi-battery charging based on the State of Charge (SoC). The converter construction is modified here as per the prerequisite of the model. The system hardware is developed and tested using Atmega2560 low power RISC based high-performance microcontroller. The batteries' SoC level and State of Health (SoH) are calculated using embedded sensors and communication platforms through the IoT platform and Global System Monitoring (GSM) technology. The GSM and IoT technology ensure that the different batteries are monitored periodically, and any irregularities are immediately addressed through the distributed energy management control technique. This ensures a safe, reliable, and effective charging of multiple batteries with increased accuracy, thereby maximizing battery life and reducing operational costs.
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- 2023
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6. Efficiency, market concentration and bank performance during the COVID-19 outbreak: Evidence from the MENA region.
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Miroslav Mateev, Muhammad Usman Tariq, and Ahmad Sahyouni
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Medicine ,Science - Abstract
This study aims to contribute to the existing literature that explores the impact of market concentration on bank efficiency in emerging economies. Using a sample of 225 banks in 18 countries in the Middle East and North Africa (MENA) region over the period 2006-2020, we empirically investigate the significance of this relationship. Since the evidence of concentration effect on efficiency during the COVID-19 outbreak is ambiguous, we test the hypothesis that the efficiency is positively affected by the level of banking market concentration in the MENA region. We adopt fixed effect model specifications and test the robustness of our results with the two-step Generalized Method of Moments (GMM) estimation technique. Our analysis finds a strong positive association between market concentration and bank efficiency. The analysis of different types of banking systems that co-existing in the MENA region (Islamic and conventional) indicates the market concentration effect is more pronounced when the banking institution is Islamic and during the COVID-19 outbreak. Moreover, the better economic performance of Islamic banks during the initial stage of pandemic further increases their efficiency. Our analysis indicated that the impact of market competitive conditions on bank efficiency varies significantly across banks with different ownership structures and is more pronounced for government-owned banks. The results are robust using different model specifications and alternative estimation techniques.
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- 2023
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7. Retiform hemangioendothelioma: a case series and review of the literature
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Qurratulain Chundriger, Muhammad Usman Tariq, Shabina Rahim, Jamshid Abdul-Ghafar, and Nasir Ud Din
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Retiform ,Hemangioendothelioma ,Dabska tumor ,Angiosarcoma ,Hobnail ,Medicine - Abstract
Abstract Background Retiform Hemangioendothelioma (RH) is an extremely rare vascular tumor of intermediate biological behavior, which is prone to local recurrence but rarely shows metastasis to distant sites. It may harbor areas resembling Dabska tumor in some cases and angiosarcoma, which in its well differentiated form may exhibit similar pathological appearance in some areas, making it problematic to rule out a possibility of a malignant diagnosis on a core biopsy. Therefore, complete surgical resection with negative margins is essential for accurate diagnosis and local control. Results In our series, two of the three Pakistani cases were in females, with an age range between 18 and 50 years. Our first patient presented with symptoms of cardiac compromise and pulmonary hypertension. Her computed tomography scan showed multiple tumor masses within the mediastinum. The second patient presented with an ulcerated lesion on his scalp, at right temple. The third patient presented with a hard growth on her left 4th toe which was amputated. Histologically, all cases exhibited retiform arborizing vascular spaces lined by bland endothelial cells with hobnail nuclei, characteristic of retiform hemangioendothelioma. Immunohistochemical markers CD31, CD34 and ERG confirmed the vascular nature of the tumor. The first and the second patient are alive and healthy at 4 and 7 months follow up respectively, while the third patient is lost to follow up. Conclusion Owing to the rate of local recurrence, RH should always be considered in the differential diagnosis of vascular tumors showing arborizing blood vessels, as it may have an atypical presentation and it should be carefully differentiated from Dabska tumor and an angiosarcoma.
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- 2021
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8. Young survivor of a rare primary anaplastic large cell lymphoma of the trachea
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Jehanzeb Shahid, Faheemullah Khan, Muhammad Usman Tariq, Faisal Jehan, and Wiqar Ahmad
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Medicine - Abstract
Primary anaplastic large cell lymphoma of the trachea is a very rare tumor. Diagnosis is often missed for a long time because the presentation often resembles that of obstructive airway disease. A 24-year-old non-smoker male presented at an outpatient clinic complaining of gradual development of stridor and shortness of breath over a recent period of four weeks. Imaging workup revealed a large lobulated, soft tissue, mildly enhancing, eccentrically placed intraluminal proximal tracheal mass, which showed extension outside of the tracheal lumen in the peritracheal fat. The patient underwent surgery. A biopsy of the resected mass reported anaplastic large cell lymphoma. Post-operation, the patient underwent chemotherapy consisting of four cycles of CHOP (cyclophosphamide, doxorubicin, vincristine and prednisolone). Follow-up imaging showed non-visualization of the mass. Primary lymphoma (anaplastic large cell lymphoma, which is a rare type of non-Hodgkin’s lymphoma) of the trachea is a rare tumor. Early curative resection with post-operative chemotherapy has a favorable outcome, as in our case.
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- 2021
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9. Adenoid cystic carcinoma of external auditory canal: A rare disease
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Abdul Basit Vardag, Muhammad Hassan Danish, Muhammad Sohail Awan, Muhammad Usman Tariq, Omaima Anis Bhatti, and Muhammad Hammad
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Medicine - Abstract
Abstract External auditory canal, like other epithelialized surfaces is predisposed to malignancies such as Squamous cell carcinomas (SCC), melanomas and adenocarcinomas. In this background, malignancies like adenoid cystic carcinoma (ACC) are a rare occurrence and need to be thoroughly evaluated both locally and for distant extension. The malignancy needs to be addressed with an aggressive approach surgically with adequate marginal clearance. The role of radiation is debatable considering the outcomes in the limited data. Here we present a case of a 35-year-old female who presented with otalgia and otorrhea associated a mass in the external auditory canal. After biopsy and imaging, a diagnosis of adenoid cystic carcinoma was made, and the patient was managed accordingly. Keywords: Adenoid cystic carcinoma, External auditory canal, Neck dissection Continuous...
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- 2021
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10. Competition, capital growth and risk-taking in emerging markets: Policy implications for banking sector stability during COVID-19 pandemic.
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Miroslav Mateev, Muhammad Usman Tariq, and Ahmad Sahyouni
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Medicine ,Science - Abstract
This paper investigates how banking competition and capital level impact on the risk-taking behavior of banking institutions in the Middle East and North Africa (MENA) region. The topic is perceived to be of significant importance during the COVID-19 pandemic. We use data for more than 225 banks in 18 countries in the MENA region to test whether increased competition causes banks to hold higher capital ratios. Employing panel data techniques, and distinguishing between Islamic and conventional banks, we show that banks tend to hold higher capital ratios when operating in a more competitive environment. We also provide evidence that banks in the MENA region increase their capitalization levels in response to a higher risk and vice versa. Further, banking concentration (measured by the HH-index) and credit risk have a significant and positive impact on capital ratios of IBs, whereas competition does play a restrictive role in determining the level of their capital. The results hold when controlling for ownership structure, regulatory and institutional environment, bank-specific and macroeconomic characteristics. Our findings inform regulatory authorities concerned with improving the financial stability of banking sector in the MENA region to strengthen their policies in order to force banks to better align with capital requirements and risk during the COVID-19 pandemic.
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- 2021
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11. SpeCollate: Deep cross-modal similarity network for mass spectrometry data based peptide deductions
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Muhammad Usman Tariq and Fahad Saeed
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Medicine ,Science - Abstract
Historically, the database search algorithms have been the de facto standard for inferring peptides from mass spectrometry (MS) data. Database search algorithms deduce peptides by transforming theoretical peptides into theoretical spectra and matching them to the experimental spectra. Heuristic similarity-scoring functions are used to match an experimental spectrum to a theoretical spectrum. However, the heuristic nature of the scoring functions and the simple transformation of the peptides into theoretical spectra, along with noisy mass spectra for the less abundant peptides, can introduce a cascade of inaccuracies. In this paper, we design and implement a Deep Cross-Modal Similarity Network called SpeCollate, which overcomes these inaccuracies by learning the similarity function between experimental spectra and peptides directly from the labeled MS data. SpeCollate transforms spectra and peptides into a shared Euclidean subspace by learning fixed size embeddings for both. Our proposed deep-learning network trains on sextuplets of positive and negative examples coupled with our custom-designed SNAP-loss function. Online hardest negative mining is used to select the appropriate negative examples for optimal training performance. We use 4.8 million sextuplets obtained from the NIST and MassIVE peptide libraries to train the network and demonstrate that for closed search, SpeCollate is able to perform better than Crux and MSFragger in terms of the number of peptide-spectrum matches (PSMs) and unique peptides identified under 1% FDR for real-world data. SpeCollate also identifies a large number of peptides not reported by either Crux or MSFragger. To the best of our knowledge, our proposed SpeCollate is the first deep-learning network that can determine the cross-modal similarity between peptides and mass-spectra for MS-based proteomics. We believe SpeCollate is significant progress towards developing machine-learning solutions for MS-based omics data analysis. SpeCollate is available at https://deepspecs.github.io/.
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- 2021
12. Eccrine spiradenoma: a rare adnexal tumour with atypical presentation, a case report
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Adnan Salim, Muhammad Usman Tariq, and Sana Zeeshan
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Medicine - Abstract
Abstract First described in 1934, eccrine spiradenoma (ES) is a rare, benign adnexal tumour arising from eccrine sweat glands. It commonly presents as a slow-growing nodule on the upper trunk, and head and neck region, mostly in the age bracket of 15-35 years, with no gender preference. While no established guidelines exist for optimal management of malignant ES, some therapies have been studied. The diagnosis of this entity is extremely important as it can harbour a malignant component with disastrous outcomes which may be missed due to its strong resemblance to benign lesions, such as a papilloma. Here, we present the case of a 35-year-old lady who presented with a papilloma-like growth on the upper medial aspect of the thigh which was diagnosed as eccrine spiradenoma upon excision. Keywords: Eccrine Spiradenoma, adnexal tumour, dermal lesion, case report. Continuous...
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- 2020
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13. Lipoblastoma: a clinicopathologic review of 23 cases from a major tertiary care center plus detailed review of literature
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Jamshid Abdul-Ghafar, Zubair Ahmad, Muhammad Usman Tariq, Naila Kayani, and Nasir Uddin
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Lipoblastoma ,Adipocyte ,Benign ,Recurrence ,Medicine ,Biology (General) ,QH301-705.5 ,Science (General) ,Q1-390 - Abstract
Abstract Objective Lipoblastoma is a rare neoplasm that occurs mostly in infants and children. Although benign, it has a tendency for local recurrence. Results Clinical and pathological features of 23 cases of lipoblastoma described. Patients’ age ranged from 8 months to 18 years with mean and median age 4.1 and 2.5 years, respectively. Male:female ratio was 2.8:1. Most common sites were lower extremities (9 cases), followed by abdominal cavity and retroperitoneum (4 cases), and scrotum/groin (3 cases). Grossly, 22 tumors were well circumscribed and multi nodular. All cases showed lobules composed of adipocytes and lipoblasts with intervening fibrous septa and fine vascular network. Myxoid change, capsule formation and septation were seen in all cases. Zonation was seen in 2 cases. Follow-up was available in 14 out of 23 patients. Of these, 13 were alive and free of disease with no evidence of any recurrent lesion. One patient with a mediastinal infiltrating lipoblastoma experienced 4 recurrences. Lipoblastoma is a benign adipocytic neoplasm of infants and young children. Correlation of clinical and histological features helps in reaching a correct diagnosis. Owing to a high recurrence rate following incomplete resection, a complete resection is essential. Prognosis is excellent after complete resection.
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- 2018
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14. The many faces of solitary fibrous tumor; diversity of histological features, differential diagnosis and role of molecular studies and surrogate markers in avoiding misdiagnosis and predicting the behavior
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Muhammad Usman Tariq, Jamshid Abdul-Ghafar, Yong-Koo Park, and Nasir Ud Din
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Adult ,Male ,Pathology ,medicine.medical_specialty ,Solitary fibrous tumor ,Histology ,Soft Tissue Neoplasm ,Adolescent ,NAB2-STAT6 ,Malignant peripheral nerve sheath tumor ,Review ,Biology ,Liposarcoma ,Pathology and Forensic Medicine ,Diagnosis, Differential ,Young Adult ,Predictive Value of Tests ,medicine ,Dermatofibrosarcoma protuberans ,Biomarkers, Tumor ,Humans ,RB1-214 ,Stromal tumor ,Diagnostic Errors ,Child ,Aged ,Aged, 80 and over ,General Medicine ,Staghorn, fusion transcript ,Middle Aged ,medicine.disease ,Prognosis ,Immunohistochemistry ,Synovial sarcoma ,Repressor Proteins ,Molecular Diagnostic Techniques ,Solitary Fibrous Tumors ,Spindle cell lipoma ,Mutation ,Female ,CD34 ,Gene Fusion ,STAT6 Transcription Factor ,STAT-6 ,Hemangiopericytoma - Abstract
Background Solitary Fibrous Tumor (SFT) is a distinct soft tissue neoplasm associated with NAB2-STAT6 gene fusion. It can involve a number of anatomic sites and exhibits a wide spectrum of histological features. Main body Apart from diversity in morphological features seen even in conventional SFT, two histologic variants (fat-forming and giant cell-rich) are also recognized. In addition, a malignant form and dedifferentiation are well recognized. Owing to diverse histological features and involvement of diverse anatomic locations, SFT can mimic other soft tissue neoplasms of different lineages including schwannoma, spindle cell lipoma, dermatofibrosarcoma protuberans, liposarcoma, gastrointestinal stromal tumor (GIST), malignant peripheral nerve sheath tumor (MPNST), and synovial sarcoma. SFT is classified as an intermediate (rarely metastasizing) tumor according to World Health Organization Classification of Tumors of Soft tissue and Bone, 5th edition. The management and prognosis of SFT differs from its malignant mimics and correct diagnosis is therefore important. Although SFT expresses a distinct immunohistochemical (IHC) profile, the classic histomorphological and IHC profile is not seen in all cases and diagnosis can be challenging. NAB2-STAT6 gene fusion has recently emerged as a sensitive and specific molecular marker and its IHC surrogate marker signal transducer and activator of transcription 6 (STAT6) has also shown significant sensitivity and specificity. However, few recent studies have reported STAT6 expression in other soft tissue neoplasms. Conclusion This review will focus on describing the diversity of histological features of SFT, differential diagnoses and discussing the features helpful in distinguishing SFT from its histological mimics.
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- 2021
15. Adenoid cystic carcinoma of external auditory canal: A rare disease
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Muhammad Hassan Danish, Abdul Basit Shah Vardag, Muhammad Sohail Awan, Muhammad Bin Hammad, Muhammad Usman Tariq, and Omaima Anis Bhatti
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medicine.medical_specialty ,medicine.diagnostic_test ,Adenoid cystic carcinoma ,business.industry ,medicine.medical_treatment ,Neck dissection ,General Medicine ,medicine.disease ,Malignancy ,Auditory canal ,stomatognathic diseases ,Biopsy ,otorhinolaryngologic diseases ,medicine ,Radiology ,business ,Rare disease - Abstract
External auditory canal, like other epithelialized surfaces is predisposed to malignancies such as Squamous cell carcinomas (SCC), melanomas and adenocarcinomas. In this background, malignancies like adenoid cystic carcinoma (ACC) are a rare occurrence and need to be thoroughly evaluated both locally and for distant extension. The malignancy needs to be addressed with an aggressive approach surgically with adequate marginal clearance. The role of radiation is debatable considering the outcomes in the limited data. Here we present a case of a 35-year-old female who presented with otalgia and otorrhea associated a mass in the external auditory canal. After biopsy and imaging, a diagnosis of adenoid cystic carcinoma was made, and the patient was managed accordingly. Keywords: Adenoid cystic carcinoma, External auditory canal, Neck dissection Continuous...
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- 2021
- Full Text
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16. Dental care of patients scheduled for cardiovascular surgery: which protocols to follow?
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Muhammad Usman Tariq, Humayun Kaleem Siddiqui, and Farhan Raza Khan
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medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,Dental procedures ,General Medicine ,medicine.disease ,Dental care ,Surgery ,Scientific evidence ,Cardiac surgery ,stomatognathic diseases ,stomatognathic system ,Dental extraction ,Infective endocarditis ,cardiovascular system ,medicine ,business - Abstract
Dental extraction of abscessed or infected teeth before cardiac operation is frequently advocated to lower the risk of infections especially infective endocarditis. The scientific evidence that supports dental procedures before cardio-valvular surgery is however limited. The aim of the present paper was to explore whether there are any protocols for patients needing dental treatment before cardiac operations. Moreover, we have discussed the real life challenges encountered in the management of such patients. Continuous....
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- 2021
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17. Retiform hemangioendothelioma: a case series and review of the literature
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Jamshid Abdul-Ghafar, Muhammad Usman Tariq, Nasir Ud Din, Shabina Rahim, and Qurratulain Chundriger
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Adult ,Male ,medicine.medical_specialty ,Skin Neoplasms ,Adolescent ,Biopsy ,Retiform ,Dabska tumor ,lcsh:Medicine ,Mediastinal Neoplasms ,Hemangioendothelioma ,Metastasis ,Neoplasms, Multiple Primary ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Angiosarcoma ,Humans ,Pathological ,Hobnail ,Scalp ,Retiform Hemangioendothelioma ,business.industry ,lcsh:R ,Mediastinum ,General Medicine ,Middle Aged ,Toes ,medicine.disease ,medicine.anatomical_structure ,Head and Neck Neoplasms ,030220 oncology & carcinogenesis ,Female ,Radiology ,Differential diagnosis ,business ,Research Article - Abstract
Background Retiform Hemangioendothelioma (RH) is an extremely rare vascular tumor of intermediate biological behavior, which is prone to local recurrence but rarely shows metastasis to distant sites. It may harbor areas resembling Dabska tumor in some cases and angiosarcoma, which in its well differentiated form may exhibit similar pathological appearance in some areas, making it problematic to rule out a possibility of a malignant diagnosis on a core biopsy. Therefore, complete surgical resection with negative margins is essential for accurate diagnosis and local control. Results In our series, two of the three Pakistani cases were in females, with an age range between 18 and 50 years. Our first patient presented with symptoms of cardiac compromise and pulmonary hypertension. Her computed tomography scan showed multiple tumor masses within the mediastinum. The second patient presented with an ulcerated lesion on his scalp, at right temple. The third patient presented with a hard growth on her left 4th toe which was amputated. Histologically, all cases exhibited retiform arborizing vascular spaces lined by bland endothelial cells with hobnail nuclei, characteristic of retiform hemangioendothelioma. Immunohistochemical markers CD31, CD34 and ERG confirmed the vascular nature of the tumor. The first and the second patient are alive and healthy at 4 and 7 months follow up respectively, while the third patient is lost to follow up. Conclusion Owing to the rate of local recurrence, RH should always be considered in the differential diagnosis of vascular tumors showing arborizing blood vessels, as it may have an atypical presentation and it should be carefully differentiated from Dabska tumor and an angiosarcoma.
- Published
- 2021
18. Giant Juvenile Fibroadenoma of the breast in a 13-year-old Pakistani girl with excellent cosmetic outcome after subareolar enucleation – A case report
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Kulsoom Shaikh, Lubna Mushtaque Vohra, Sana Zeeshan, and Muhammad Usman Tariq
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medicine.medical_specialty ,BMI, body mass index ,Juvenile fibroadenoma ,media_common.quotation_subject ,Enucleation ,GF, giant fibroadenoma ,Case Report ,Periareolar ,03 medical and health sciences ,0302 clinical medicine ,Giant fibroadenoma ,medicine ,Girl ,Sub-areolar excision ,skin and connective tissue diseases ,media_common ,Benign breast lump ,BPT, Benign phyllodes tumor ,PASH, pseudoangiomatous stromal hyperplasia ,FNA, fine-needle aspiration ,business.industry ,NAC, nipple areolar complex ,Phyllodes tumor ,JF, juvenile fibroadenoma ,medicine.disease ,Fibroadenoma ,body regions ,030220 oncology & carcinogenesis ,Subareolar Region ,030211 gastroenterology & hepatology ,Surgery ,GJF, giant juvenile fibroadenoma ,Radiology ,business - Abstract
Highlights • Diagnosis and management of giant juvenile fibroadenoma can be challenging. • Maintaining symmetry after complete excision is tougher in developing breasts. • Periareolar approach for subareolar fibroadenomas provides good cosmetic results. • Benign tumor to breast size ratio up to 70% provides excellent cosmetic outcome., Introduction Fibroadenoma is the most common benign lesion of breast in young women, characterized by an aberrant proliferation of both epithelial and mesenchymal elements. It is termed giant fibroadenoma when it is larger than 5 cm or weighs more than 500 g with an incidence of 0.5–2% of all fibroadenomas. Presentation of case In this report, we discuss a case of a 13-year-old Pakistani girl who presented with a giant juvenile fibroadenoma in left breast and was treated by a subareolar lump excision through a periareolar incision with excellent cosmetic outcome. To the best of our literature search, this is the first case of giant juvenile fibroadenoma in an adolescent being reported from Pakistan. Discussion Surgical management of giant juvenile fibroadenoma in immature breast is challenging as it may either result in asymmetric defect or damage to developing breast tissue resulting in long term poor outcomes. Surgical decision should be carefully undertaken and reported for future reference in such cases. Conclusion The diagnosis and management of giant juvenile fibroadenoma can be challenging because these tumors clinically and histologically mimic phyllodes tumor due to their rapid growth and large size. Excision through a periareolar approach for fibroadenomas located in subareolar region provides good cosmetic results in these patients with minimal scar visibility.
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- 2021
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19. Low performance of internal medicine senior residents in in-service examinations
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Zain Muhammad Mushtaq, Qamar Riaz, Syed Ahsan Ali, Muhammad Usman Tariq, and Safia Awan
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Service (business) ,medicine.medical_specialty ,business.industry ,education ,010102 general mathematics ,Significant difference ,Internship and Residency ,Retrospective cohort study ,General Medicine ,01 natural sciences ,Formative assessment ,03 medical and health sciences ,0302 clinical medicine ,Summative assessment ,Internal medicine ,Internal Medicine ,medicine ,Humans ,Clinical Competence ,030212 general & internal medicine ,0101 mathematics ,business - Abstract
We observed an unprecedented and consistent low performance of senior residents as compared with juniors in monthly examinations. This compelled us to evaluate systematically and compare the scores of senior residents with their junior colleagues. This retrospective observational study was conducted in April 2020 among internal medicine residents. Residents in first and second year of their training were labelled as junior residents. Residents in third or fourth year of their training were labelled as senior residents. Comparison of mean scores of each resident level was done separately both for monthly formative multiple-choice questions tests, and summative yearly end of term examinations. We discussed the possible reasons as well. There were 67 residents in year 2018 and 69 in 2019. There is no significant difference between scores of monthly examinations of years 2018 and 2019 among residents of each level. Rather, in March and December 2018, junior residents perform better than senior residents with p values of 0.01 and 0.04, respectively. In February and September 2019, senior residents performed better than junior residents with p value of 0.02. Similarly, there is no significant difference in scores of residents of each level in end-of-term examinations of years 2018 and 2019 with p values 0.18 and 0.25, respectively. Performance of senior residents in our residency programme in in-service examinations is relatively low as compared with their junior colleagues. There is a need to evaluate reasons for this relatively low performance of senior residents.
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- 2021
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20. The Glenn procedure: Clinical outcomes in patients with congenital heart disease in pakistan
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Muneer Amanullah, Shiraz Hashmi, Muhammad Usman Tariq, Ibrahim Zahid, and Syed Shahabuddin
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Heart Defects, Congenital ,Male ,medicine.medical_specialty ,lcsh:Diseases of the circulatory (Cardiovascular) system ,Vena Cava, Superior ,Heart disease ,Pleural effusion ,Heart Ventricles ,Pulmonary Artery ,Anastomosis ,Fontan Procedure ,lcsh:RD78.3-87.3 ,single ventricle ,Humans ,Medicine ,bidirectional glenn shunt ,glenn shunt ,Pakistan ,Tricuspid atresia ,Stage (cooking) ,Retrospective Studies ,cavopulmonary anastomosis ,business.industry ,fontan completion ,Infant ,General Medicine ,medicine.disease ,Right pulmonary artery ,congenital heart disease ,Surgery ,Pneumonia ,Treatment Outcome ,Anesthesiology and Pain Medicine ,Glenn procedure ,lcsh:Anesthesiology ,lcsh:RC666-701 ,Original Article ,Cardiology and Cardiovascular Medicine ,business - Abstract
Objectives: Congenital heart defects (CHDs) affect more than 40,000 children annually in Pakistan. Approximately 80% of patients require at least one surgical intervention to achieve a complete or palliative cardiac repair. The Glenn shunt, a palliative procedure is established between superior vena cava (SVC) and the right pulmonary artery to provide an anastomosis offering minimal risk to patients with univentricular heart disease. The aim of this study was to assess the clinical outcomes of the Glenn shunt procedure in patients with complex congenital heart diseases in a developing country like Pakistan. Materials and Methods: A retrospective chart review was conducted on patients who underwent a bidirectional Glenn shunt procedure from July 2006 to June 2017. Data were collected on a structured questionnaire and analyses performed on SPSS version 22. Frequencies and percentages were computed for categorical variables while mean and standard deviation for continuous variables where appropriate. Results: A total of 79 patients underwent the Glenn shunt procedures. The median age was 1.9 years and 54.5% were male. Tricuspid atresia was the primary diagnosis in 30.4% of the patients. Common morbidities included arrhythmias (6.3%), pleural effusion (8.9%), wound infection (3.8%), pneumonia (2.5%), and seizures (3.8%); reopening was required in 2.5% of the patients and 8.8% were readmitted within 30 days of index operation. There were three (3.8%) deaths in total. Conclusions: Bidirectional Glenn shunt procedure can be performed safely in patients with ideal characteristics as the first stage palliation and has favorable results with acceptable rate of complications.
- Published
- 2021
21. Using the cognitive apprenticeship model to identify learning strategies that learners view as effective in ward rounds
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Sonia Ijaz Haider, Aamir Abbas, Sundus Iqbal, and Muhammad Usman Tariq
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Models, Educational ,Students, Medical ,020205 medical informatics ,Situated learning ,02 engineering and technology ,Coaching ,03 medical and health sciences ,Cognition ,0302 clinical medicine ,Surveys and Questionnaires ,Internal Medicine ,0202 electrical engineering, electronic engineering, information engineering ,Cognitive apprenticeship ,Humans ,Learning ,Medicine ,Pakistan ,030212 general & internal medicine ,Set (psychology) ,Medical education ,business.industry ,Learning environment ,Significant difference ,General Medicine ,University hospital ,Test (assessment) ,Cross-Sectional Studies ,Teaching Rounds ,business ,Education, Medical, Undergraduate - Abstract
Background Cognitive apprenticeship model (CAM) is an instructional model for situated learning. There is limited data available on application of the CAM in clinical settings. The aim of the study was to identify learning strategies using CAM, which in the opinion of learners are effective in ward rounds. Methods Participants were residents and medical students who rotated through internal medicine at Aga Khan University Hospital, Karachi. We sought learners’ opinion on a structured questionnaire based on four principal dimensions of cognitive apprenticeship. A previously determined set of 10 defined competencies were compared with CAM’s six teaching/learning (T/L) methods (modelling, coaching, scaffolding, articulation, reflection and exploration) as well. Mean and SD were calculated. Mann-Whitney test was used to compare scores. Results Of 195 participants, there were 100 men (51.3%) and 95 women (48.7%). Perceived learning for six T/L methods, ranged from 3.7 to 3.9 (max=5). Coaching and scaffolding had the highest scores. Statistically significant difference between the student and resident groups was noted. Medical students perceived coaching and scaffolding (4.1 and 4.05) and residents rated coaching, articulation and exploration as most effective (3.9 and 3.8). Majority (82.1%) reported a positive learning environment in wards. Conclusions CAM enabled to identify two T/L methods (scaffolding and coaching) that are important for learning in ward round. Limited differences in perceived effectiveness of the T/L methods indicate that variety can be used to sustain interest in learners. Positive learning environment, team diversity and tasks of increasing complexity contribute to learning.
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- 2020
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22. Dedifferentiated Liposarcoma With Meningothelial-Like Whorls: Five Additional Cases and Review of the Literature
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Muhammad Usman Tariq, Nasir Ud Din, Naila Kayani, and Tariq Moatter
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Adult ,Male ,Pathology ,medicine.medical_specialty ,Dedifferentiated liposarcoma ,Soft Tissue Neoplasms ,Liposarcoma ,Middle Aged ,Biology ,medicine.disease ,Pathology and Forensic Medicine ,body regions ,medicine ,Humans ,Female ,Surgery ,Anatomy ,Whorl (botany) ,Aged - Abstract
Background. Diagnosis of dedifferentiated liposarcoma (DDL) can sometimes be challenging due to a wide variety of histological features. “Meningothelial-like” whorl is an uncommon histological feature of DDL, which is also observed in neural tumors and follicular dendritic cell sarcoma. This feature is frequently associated with metaplastic bone formation. We conducted this study to describe the clinicopathological features of DDL with meningothelial-like whorls that would aid in establishing accurate diagnosis. Material and Methods. Microscopic glass slides of 5 cases of DDL with meningothelial-like whorls, diagnosed between January 2010 and December 2019, were reviewed. Results. Paratesticular region was the most common site. Whorls occupied 10% to 75% of tumor area and ranged in size from 2 cm. In 1 case, these whorls coalesced to form large areas of dedifferentiation. The cells forming whorls were spindle to epithelioid shaped and lacked significant nuclear pleomorphism and increased mitoses. Metaplastic bone formation was observed in 4 cases and cartilage formation in 3 cases. p16 and α-smooth muscle actin (α-SMA) immunohistochemical stains were positive in 2 cases, when performed. MDM2 gene amplification was observed in all cases by fluorescence in situ hybridization technique. These tumors showed aggressive behavior, similar to that of DDL without meningothelial-like whorls. Two patients died, 1 developed recurrence, 1 presented as recurrent tumor, and 1 developed metastasis. Conclusion. Meningothelial-like whorls in DDL most likely represent an early stage of dedifferentiation. Presence of well-differentiated liposarcoma areas, metaplastic bone formation, positive expressions for p16 and α-SMA immunohistochemical stains, and MDM2 gene amplification are useful diagnostic clues. These tumors have the potential to behave aggressively.
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- 2020
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23. Young survivor of a rare primary anaplastic large cell lymphoma of the trachea
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Muhammad Usman Tariq, Wiqar Ahmad, Jehanzeb Shahid, Faisal Jehan, and Faheemullah Khan
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Pathology ,medicine.medical_specialty ,business.industry ,General Medicine ,medicine.disease ,Lymphoma ,Rare tumor ,Obstructive airway disease ,hemic and lymphatic diseases ,medicine ,Medicine ,Presentation (obstetrics) ,business ,Anaplastic large-cell lymphoma - Abstract
Primary anaplastic large cell lymphoma of the trachea is a very rare tumor. Diagnosis is often missed for a long time because the presentation often resembles that of obstructive airway disease. A 24-year-old non-smoker male presented at an outpatient clinic complaining of gradual development of stridor and shortness of breath over a recent period of four weeks. Imaging workup revealed a large lobulated, soft tissue, mildly enhancing, eccentrically placed intraluminal proximal tracheal mass, which showed extension outside of the tracheal lumen in the peritracheal fat. The patient underwent surgery. A biopsy of the resected mass reported anaplastic large cell lymphoma. Post-operation, the patient underwent chemotherapy consisting of four cycles of CHOP (cyclophosphamide, doxorubicin, vincristine and prednisolone). Follow-up imaging showed non-visualization of the mass. Primary lymphoma (anaplastic large cell lymphoma, which is a rare type of non-Hodgkin’s lymphoma) of the trachea is a rare tumor. Early curative resection with post-operative chemotherapy has a favorable outcome, as in our case.
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- 2021
24. Diagnostic Utility of TLE1 (Transducer-Like Enhancer of Split 1) in Distinguishing Synovial Sarcoma from Mimicking Tumors
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Nasir Ud Din, Jamshid Abdul-Ghafar, Qurratulain Chundriger, Madiha Bilal Qureshi, and Muhammad Usman Tariq
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Pathology ,medicine.medical_specialty ,business.industry ,International Journal of General Medicine ,General Medicine ,synovial sarcoma ,medicine.disease ,Synovial sarcoma ,Transducer ,monophasic synovial sarcoma ,TLE1 ,Medicine ,business ,Enhancer ,Original Research - Abstract
Madiha Bilal Qureshi,1 Muhammad Usman Tariq,1 Jamshid Abdul-Ghafar,2 Qurratulain Chundriger,1 Nasir Ud Din1 1Department of Pathology and Laboratory Medicine, Aga Khan University Hospital, Karachi, Pakistan; 2Department of Pathology and Clinical Laboratory, French Medical Institute for Mothers and Children (FMIC), Kabul, AfghanistanCorrespondence: Jamshid Abdul-GhafarDepartment of Pathology and Clinical Laboratory, French Medical Institute for Mothers and Children (FMIC), Kabul, AfghanistanTel +93 792 827 287Email jamshid.jalal@fmic.org.afBackground: Synovial sarcoma (SS) is a high-grade spindle cell tumor that accounts for 5% to 10% of soft tissue sarcomas. The majority originate from the deep intramuscular soft tissues of extremities with common sites including knee, ankle and feet. Immunohistochemical (IHC) stain TLE1 (transducer-like enhancer of split 1) is a potent diagnostic marker for distinguishing SS from mimicking tumors.Methodology: The study was performed on 177 tumor cases, including 89 SS and 88 non-synovial sarcoma (N-SS) cases which were diagnosed at Department of Pathology and Laboratory Medicine, Aga Khan University Hospital, from July 2019 to June 2020. Hematoxylin and eosin (H&E) and IHC stained glass slides of these cases were reviewed. TLE1 expression was assessed based on the Remmele scoring system.Results: Eighty-nine cases of SS and 88 cases of N-SS were included in the study. SS cases included 42 (47.2%) monophasic subtype, 6 (6.7%) biphasic subtype and 41 (46.1%) poorly differentiated subtype. Major tumor types in N-SS cases were 27 (30.7%) Ewing sarcoma (ES), 13 (14.8%) leiomyosarcoma, 10 (11.4%) undifferentiated sarcoma (US), 8 (9.1%) fibrosarcomatous dermatofibrosarcoma protuberans and 7 (8%) malignant peripheral nerve sheath tumor cases. Mean patientsâ age for SS cases was 26.14 years and for N-SS cases was 32.64 years. All 89 SS cases showed positive TLE1 expression. Out of 88 N-SS cases, 71 (80.7%) were TLE1 negative and 17 (19.3%) showed positive expression.Conclusion: This study shows that TLE1 is a very sensitive and relatively specific IHC marker for SS. TLE1 expression can be observed in other soft tissue sarcomas but diffuse strong TLE1 expression is highly specific for SS. The diagnosis should not solely rely on TLE1 expression and morphologic features but should include soft tissue specific lineage markers to avoid misdiagnosis.Keywords: synovial sarcoma, monophasic synovial sarcoma, TLE1
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- 2021
25. Concomitant bilateral mandibular cemento-ossifying fibroma and cementoblastoma: case report of an extremely rare occurrence
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Muhammad Usman Tariq, Nasir Ud Din, Muhammad Raza, Madiha Bilal Qureshi, and Jamshid Abdul-Ghafar
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Adult ,Concomitant ,Case Report ,Odontogenic Tumors ,Mandible ,Cemento-ossifying fibroma ,Lesion ,stomatognathic system ,Medicine ,Humans ,General Dentistry ,Unusual case ,Cementoma ,business.industry ,Cementoblastoma ,RK1-715 ,Anatomy ,medicine.disease ,Odontogenic ,stomatognathic diseases ,Mandibular Neoplasms ,Dentistry ,Fibroma, Ossifying ,Female ,medicine.symptom ,Fibroma ,business - Abstract
Background Cemento-ossifying fibroma (COF) and cementoblastoma (CB) are rare benign odontogenic tumors with a predilection for the mandible. Cemento-ossifying fibroma is a fibro-osseous lesion that originates in the tooth bearing areas of jaw and shows cementum-like tissue in a fibrotic stroma. Cementoblastoma is classically related to roots of teeth with the presence of calcified cementum-like material. To date, only a single case of concomitant unilateral COF and CB has been reported in the literature. Case presentation We present an unusual case of a 37-year-old female who presented with two discrete bilateral swellings in the right and left mandible for 10 years. The larger tumor involved the left posterior mandible with extension anteriorly to the left and right anterior mandibles, and the smaller tumor was present in right posterior mandible. Radiology revealed two distinct lesions involving both sides of mandible. Histopathological examination showed characteristic features of cemento-ossifying fibroma in sections of the larger tumor and cementoblastoma in sections of smaller tumor. Conclusion This case shows the very unique bilateral co-existence of COF and CB, the second case reported in literature to date.
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- 2021
26. Mantle cell lymphoma presenting as synchronous bilateral breast lumps and arm mass
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Kulsoom Fatima and Muhammad Usman Tariq
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Adult ,medicine.medical_specialty ,business.industry ,Breast lumps ,Breast Neoplasms ,Lymphoma, Mantle-Cell ,medicine.disease ,Oncology ,Arm ,Internal Medicine ,medicine ,Humans ,Female ,Surgery ,Mantle cell lymphoma ,Breast ,Radiology ,medicine.symptom ,business - Published
- 2020
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27. Rare aneurysm of anterior mitral valve leaflet-a case report
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Muhammad Usman Tariq, Shahid Sami, and Ibrahim Zahid
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Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,medicine.medical_treatment ,Diastole ,lcsh:Surgery ,Case Report ,030204 cardiovascular system & hematology ,Mitral valve aneurysm ,lcsh:RD78.3-87.3 ,03 medical and health sciences ,0302 clinical medicine ,Aneurysm ,Mitral valve ,medicine ,Humans ,cardiovascular diseases ,Heart Aneurysm ,Systole ,Mitral regurgitation ,Heart Valve Prosthesis Implantation ,business.industry ,Mitral valve replacement ,Mitral Valve Insufficiency ,General Medicine ,lcsh:RD1-811 ,Middle Aged ,medicine.disease ,Cardiac surgery ,Surgery ,medicine.anatomical_structure ,030228 respiratory system ,Cardiothoracic surgery ,lcsh:Anesthesiology ,Anterior mitral leaflet ,cardiovascular system ,Mitral Valve ,Female ,Cardiology and Cardiovascular Medicine ,business - Abstract
Background Mitral valve aneurysm (MVA) is a saccular outpouching of the mitral leaflet which expands on systole and collapses during diastole. The case of MVA was first described in 1729 by Morand. It is one of the rare entities with a reported incidence of only 0.2–0.29% and no such case reported in Pakistan before. Case presentation A 51 year old female presented with dyspnea and chest pain for 3 months. Upon investigating, trans-esophageal echocardiography (TEE) revealed thickened anterior mitral valve leaflet with rolled up margins, forming an aneurysm, with severe mitral regurgitation. Subsequently, the valve was evaluated intra-operatively for repair but eventually had to be excised and then successfully replaced with a bioprosthetic valve. Conclusions TEE is an excellent technique to confirm the diagnosis of a mitral valve leaflet aneurysm, and depending upon the severity of the defect, valve repair can be attempted but replacement becomes the most suitable treatment modality, once repair is deemed impossible. We hereby report a rare case, where timely diagnosis, appropriate surgical intervention and regular post-operative follow up helped in achieving good prognosis of this rare entity.
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- 2019
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28. Clinically isolated aortitis presenting as inferior ST-elevation myocardial infarction due to an unruptured sinus of Valsalva aneurysm: a rare and forgotten cause of acute coronary syndrome in a young patient with no evidence of systemic vasculitis
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Abdul Baqi, Intisar Ahmed, Pirbhat Shams, and Muhammad Usman Tariq
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Adult ,Male ,medicine.medical_specialty ,Acute coronary syndrome ,Case Report ,030204 cardiovascular system & hematology ,Chest pain ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Aneurysm ,Internal medicine ,medicine.artery ,Ascending aorta ,medicine ,Humans ,cardiovascular diseases ,Myocardial infarction ,Acute Coronary Syndrome ,Aortitis ,business.industry ,Systemic Vasculitis ,General Medicine ,Sinus of Valsalva ,medicine.disease ,Coronary arteries ,medicine.anatomical_structure ,Right coronary artery ,cardiovascular system ,Cardiology ,ST Elevation Myocardial Infarction ,medicine.symptom ,business ,030217 neurology & neurosurgery - Abstract
A 21-year-old man presented with chest pain, diaphoresis and dyspnoea. Electrocardiogram (ECG) showed inferior ST-elevation myocardial infarction. Troponin I was positive. Patient underwent left heart catheterisation, which revealed normal epicardial coronary arteries except for right coronary artery which could not be engaged. CT coronary angiogram was done, which revealed large right sinus of Valsalva aneurysm giving rise to a pinched out right coronary artery. Patient underwent composite graft replacement of aortic valve, aortic root and ascending aorta along with a saphenous vein graft to right coronary artery. He was discharged in stable condition on fifth postoperative day. Biopsy of the aneurysmal tissue was suggestive of vasculitic aetiology. There was no evidence of systemic vasculitis and Magnetic Resonance Angiography (MRA) screen was negative for Takayasu’s arteritis. Our patient was, hence, diagnosed with clinically isolated aortitis leading to ST elevation myocardial infarction due to an unruptured sinus of Valsalva aneurysm.
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- 2021
29. Concordance Between Clinical and Pathological Response Assessment After Neo-Adjuvant Chemotherapy in Patients With Invasive Lobular Carcinoma
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Aisha Shaikh, Shaista Khan, Hira Waheed, Saira Fatima Shaikh, Lubna Mushtaque Vohra, Muhammad Usman Tariq, and Romana Idress
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concordance ,medicine.medical_specialty ,medicine.medical_treatment ,Concordance ,Lobular carcinoma ,lobular carcinoma ,030204 cardiovascular system & hematology ,chemotherapy ,Gastroenterology ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Pathology ,medicine ,Pathological ,Chemotherapy ,response ,business.industry ,Medical record ,General Engineering ,Retrospective cohort study ,medicine.disease ,neo-adjuvant ,Oncology ,Invasive lobular carcinoma ,business ,Breast carcinoma ,030217 neurology & neurosurgery - Abstract
Background Neo-adjuvant chemotherapy (NAC) is frequently administered in breast carcinoma patients. The clinical response to NAC guides further treatment. The pathological response is not only an independent prognostic factor, but it also guides further treatment and prognosis. Objectives The aim of our study was to find the degree of concordance between clinical and pathological response assessments after NAC in Invasive lobular Carcinoma (ILC) cases by using World Health Organization (WHO) criteria and different pathological systems, respectively. We also tried to identify any useful parameter of clinical assessment that could better correlate with pathologic assessment and provide a better estimation of residual tumor. Methods This retrospective study was conducted on 26 ILC tumors diagnosed in 24 patients who were treated with NAC followed by surgical resection between January 2009 and December 2020. Medical records and microscopy glass slides were reviewed for clinical and pathological response assessments, respectively. Results The pre-treatment tumor area ranged from 1.8-255 cm2 and the mean±SD was 52.2±66.8 cm2. After NAC, complete clinical response was observed in four (15.3%) cases. The clinically assessed mean tumor area significantly reduced from 52.2±66.8 cm2 to 17.2±22.6 cm2 (p-value
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- 2021
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30. Primary Central Nervous System T-cell Lymphoma Associated With Hepatitis B and D Virus Coinfection
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Munira Moosajee, Saqib R Khan, Saad Nasir, Zoya A Siddiqui, and Muhammad Usman Tariq
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hepatitis b virus ,viruses ,Infectious Disease ,030204 cardiovascular system & hematology ,medicine.disease_cause ,t-cell lymphoma ,Virus ,03 medical and health sciences ,0302 clinical medicine ,hemic and lymphatic diseases ,Internal Medicine ,Medicine ,T-cell lymphoma ,hepatitis d ,Hepatitis B virus ,business.industry ,General Engineering ,Primary central nervous system lymphoma ,Hepatitis B ,medicine.disease ,Hepatitis D ,Virology ,Lymphoma ,Oncology ,Coinfection ,business ,030217 neurology & neurosurgery - Abstract
Primary central nervous system lymphoma (PCNSL) is a rare type of non-Hodgkin's lymphoma. It is defined as lymphoma of the central nervous system without any systemic disease elsewhere at the time of diagnosis. Based on the phenotypical features, it is divided into two categories, B-cell and T-cell, with the latter being less common. Viruses, such as human immunodeficiency virus (HIV) and human T-lymphotropic virus type 1 (HTLV-1), are linked to the T-cell variant; however, there is a lack of evidence suggesting associating hepatitis B and D virus coinfection with it. We report a case of a 34-year-old male who presented with T-cell PCNSL and was later diagnosed with a hepatitis B and D virus coinfection.
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- 2021
31. Kaposiform Hemangioendothelioma: clinicopathological characteristics of 8 cases of a rare vascular tumor and review of literature
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Nasir Ud Din, Arsalan Ahmed, Jamshid Abdul-Ghafar, Qurratulain Chundriger, and Muhammad Usman Tariq
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Adult ,Male ,Pathology ,medicine.medical_specialty ,Histology ,Soft Tissue Neoplasm ,Adolescent ,Databases, Factual ,Biopsy ,Population ,Kasabach-Merritt Syndrome ,Pathology and Forensic Medicine ,Hemangioma ,Diagnosis, Differential ,03 medical and health sciences ,0302 clinical medicine ,Predictive Value of Tests ,030225 pediatrics ,lcsh:Pathology ,Biomarkers, Tumor ,Medicine ,HHV8 ,Humans ,Nuclear atypia ,education ,Child ,Lymphangiomatosis ,Sarcoma, Kaposi ,education.field_of_study ,business.industry ,Research ,Kaposi sarcoma ,Infant ,General Medicine ,medicine.disease ,Immunohistochemistry ,Treatment Outcome ,Kaposiform Hemangioendothelioma ,Giant cell ,030220 oncology & carcinogenesis ,Child, Preschool ,Hemangioendothelioma ,Kaposiform hemangioendothelioma ,Female ,Sarcoma ,business ,lcsh:RB1-214 - Abstract
Background Kaposiform Hemangioendothelioma (KHE) is a rare vascular tumor of intermediate malignant potential which shows locally aggressive growth but only rarely metastasizes. It is mostly considered to be a tumor of pediatric population but its occurrence in the adults is not uncommon as once considered. Histologically, KHE can mimic other soft tissue neoplasms of different behaviors (e.g. Kaposi Sarcoma, hemangioma) and establishing the correct diagnosis is important for appropriate treatment. Herein, we describe the clinicopathological features of 8 cases of KHE which will be helpful in making their diagnosis. Methods We reviewed pathology reports, microscopy glass slides and obtained follow up information about 8 cases of KHE which were diagnosed at our institution from January 2008 till June 2020. Immunohistochemical stain for HHV8 was also performed. Results Age ranged from 7 months to 25 years. Seven patients were less than 20 years of age and one patient was 25 years old. Equal gender distribution was observed. Extremities were the most common sites of involvement, followed by head and neck, pancreas and ischiorectal region. 2 cases were resection specimen and all others were incisional biopsies. The largest tumor size was 5.5 cm in one of the resections. The incisional/fragmented tissues were all less than 5 cm in aggregate. Most cases showed predominance of nodular growth and a minor component of spindle cell population along with lymphangiomatosis like vascular channels, with evidence of microthrombi in 2 cases. Few multinucleated giant cells were observed in 2 cases. None of the cases exhibited significant nuclear atypia or mitotic activity. One of the cases arising in dermis showed underlying bone involvement. HHV8 was negative in 7/7 cases. Conclusions KHE can also involve adult population and it should always be considered in the differential diagnoses of a vascular lesion. Presence of multinucleated giant cells is a rare finding. Knowledge about histological features and potential mimics is helpful in avoiding misdiagnosis.
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- 2021
32. SpeCollate: Deep cross-modal similarity network for mass spectrometry data based peptide deductions
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Fahad Saeed and Muhammad Usman Tariq
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Proteomics ,Computer and Information Sciences ,Matching (graph theory) ,Computer science ,Science ,Research and Analysis Methods ,Biochemistry ,Mass Spectrometry ,Machine Learning ,Database and Informatics Methods ,Deep Learning ,Similarity (network science) ,Sequence Analysis, Protein ,Artificial Intelligence ,Oxidation ,Preprocessor ,Database Searching ,Post-Translational Modification ,Phosphorylation ,Peptide Libraries ,Preprocessing ,Multidisciplinary ,Heuristic ,business.industry ,Proteomic Databases ,Deep learning ,Chemical Reactions ,Biology and Life Sciences ,Proteins ,Software Engineering ,Function (mathematics) ,Chemistry ,Transformation (function) ,Biological Databases ,Physical Sciences ,Engineering and Technology ,Medicine ,Artificial intelligence ,business ,Peptides ,Algorithm ,Subspace topology ,Software ,Research Article - Abstract
Historically, the database search algorithms have been the de facto standard for inferring peptides from mass spectrometry (MS) data. Database search algorithms deduce peptides by transforming theoretical peptides into theoretical spectra and matching them to the experimental spectra. Heuristic similarity-scoring functions are used to match an experimental spectrum to a theoretical spectrum. However, the heuristic nature of the scoring functions and the simple transformation of the peptides into theoretical spectra, along with noisy mass spectra for the less abundant peptides, can introduce a cascade of inaccuracies. In this paper, we design and implement a Deep Cross-Modal Similarity Network called SpeCollate, which overcomes these inaccuracies by learning the similarity function between experimental spectra and peptides directly from the labeled MS data. SpeCollate transforms spectra and peptides into a shared Euclidean subspace by learning fixed size embeddings for both. Our proposed deep-learning network trains on sextuplets of positive and negative examples coupled with our custom-designed SNAP-loss function. Online hardest negative mining is used to select the appropriate negative examples for optimal training performance. We use 4.8 million sextuplets obtained from the NIST and MassIVE peptide libraries to train the network and demonstrate that for closed search, SpeCollate is able to perform better than Crux and MSFragger in terms of the number of peptide-spectrum matches (PSMs) and unique peptides identified under 1% FDR for real-world data. SpeCollate also identifies a large number of peptides not reported by either Crux or MSFragger. To the best of our knowledge, our proposed SpeCollate is the first deep-learning network that can determine the cross-modal similarity between peptides and mass-spectra for MS-based proteomics. We believe SpeCollate is significant progress towards developing machine-learning solutions for MS-based omics data analysis. SpeCollate is available at https://deepspecs.github.io/.
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- 2021
33. Malignant Eccrine Adenoma With Sarcomatous (Heterologous) Components: Report of a Rare Skin Adnexal Neoplasm With Literature Review
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Muhammad Abdulwaasey, Saira Fatima, Muhammad Usman Tariq, and Hira Ishtiaq
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Pathology ,medicine.medical_specialty ,Adenoma ,Spiradenocarcinoma ,medicine.medical_treatment ,spiradenoma ,Heterologous ,Dermatology ,030204 cardiovascular system & hematology ,heterologous ,03 medical and health sciences ,0302 clinical medicine ,medicine ,spiradenocarcinoma ,sarcomatous ,business.industry ,Wide local excision ,Not Otherwise Specified ,General Engineering ,medicine.disease ,Oncology ,eccrine ,Adenocarcinoma ,Immunohistochemistry ,business ,Spiradenoma ,030217 neurology & neurosurgery - Abstract
Malignant eccrine spiradenoma (MES) is an exceedingly rare skin adnexal tumor that arises from pre-existing benign eccrine spiradenoma (BES). MES tumors show a wide spectrum of morphological features, posing a diagnostic challenge to the pathologist. Sarcomatous (heterologous) elements are seen in a few of these tumors, further complicating the morphological picture. We herein describe a case of a 66-year-old male who presented with a recently enlarging, ulcerated, nodular skin lesion over the right leg that had been present for the last 25 years. The patient underwent wide local excision of the tumor. Microscopic examination revealed a neoplastic lesion comprising benign and malignant components. The carcinomatous component showed features of infiltrating adenocarcinoma, not otherwise specified, whereas the sarcomatous component showed predominant osteosarcomatous and focal chondrosarcomatous differentiation. The benign component showed morphological and immunohistochemical features of BES. No adjuvant treatment was administered. The patient was alive and disease-free for 14 months, after which he was lost to follow-up. Careful identification and knowledge related to histological diversity are keys to the correct diagnosis of this rare tumor. MESs are potentially aggressive tumors, and therefore, close long-term follow-up should be maintained.
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- 2020
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34. Hospital readmissions in Internal Medicine Specialty: Frequency, associated factors and outcomes
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Simra Riffat, Samar Fatima, Muhammad Usman Tariq, and Sara Shamim
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medicine.medical_specialty ,Hospital readmission ,Septic shock ,business.industry ,Index admission ,Against medical advice ,Retrospective cohort study ,Mean age ,General Medicine ,Creative commons ,medicine.disease ,Internal medicine specialty ,Emergency medicine ,Health care ,medicine ,Original Article ,Discharge ,business - Abstract
Objectives: Hospital readmission has become a focus of national attention as a potential indicator of healthcare quality and has a significant financial impact on healthcare system. Limited data is available regarding readmissions to Internal Medicine specialty from our sub-continent. It is, therefore, essential to determine the frequency and factors leading to readmissions, in order to avoid preventable readmissions and improve quality of healthcare provision. Methods: This retrospective study reviewed adult discharges from Internal Medicine specialty between October 2018 and February 2019 at Aga Khan University Hospital. Out of 1,835 discharges, 491 were randomly selected after excluding expiries. The frequency, factors and outcomes of readmission were noted. The studied outcomes included length of stay and in-hospital mortality. Results: Out of 491 patients, 15.3% were readmitted within 30-days of their discharge. Most of the readmitted patients were females (56%) and elderly with a mean age 67.1±14.9 years. Majority of the patient who got readmitted had multi-morbidities (68%) and were of functional Class-II (39%).The mean length of stay for index and readmission was between 4-7days. Eighty-percent readmissions were discharged as planned, 13% on request and seven-percent left against medical advice in their index admission. The most common causes of readmission were persistence of symptoms (43%) and nosocomial infection (29%). Avoidable causes included hospital-associated pneumonia, urinary tract infections and septic shock. Mortality in readmitted patients was 12%. Conclusions: The causes of readmission is multi-factorial, including advanced age, multi-morbidities, persistence of symptoms and nosocomial infections. Early follow-ups should be advised to prevent avoidable readmissions. doi: https://doi.org/10.12669/pjms.37.7.3575 How to cite this:Fatima S, Shamim S, Raffat S, Tariq M. Hospital readmissions in Internal Medicine Specialty: Frequency, associated factors and outcomes. Pak J Med Sci. 2021;37(7):---------. doi: https://doi.org/10.12669/pjms.37.7.3575 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
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- 2020
35. Encapsulated papillary carcinoma of breast; a clinicopathological study of 25 cases and literature review with emphasis on high grade variant
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Muhammad Usman Tariq, Madiha Bilal Qureshi, Romana Idress, and Naila Kayani
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0301 basic medicine ,Adult ,Pathology ,medicine.medical_specialty ,Breast Neoplasms ,Pathology and Forensic Medicine ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,Median follow-up ,Tumor stage ,medicine ,Humans ,Neoplasm Invasiveness ,Stage (cooking) ,Lymph node ,Aged ,Tumor size ,business.industry ,Clinical course ,General Medicine ,Middle Aged ,medicine.disease ,Carcinoma, Papillary ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Encapsulated papillary carcinoma ,Female ,Radiology ,Neoplasm Grading ,business - Abstract
Encapsulated Papillary Carcinoma (EPC) is a rare breast tumor with excellent prognosis. Treatment and stage of EPC is influenced by invasion and high nuclear grade. Our aim was to study the clinicopathological features of EPC, especially high grade tumors and to compare the features of invasive and non-invasive tumors. We reviewed clinicopathological features of 25 cases of EPC diagnosed at our institution from 2006 till 2020. Patients' age ranged from 21 to 75 years (median 55 years). Tumor size ranged from 1 to 9 cm (median 3.5 cm). Overall, invasion was present in 44% cases. High nuclear grade was observed in 24% cases. Majority of these high grade tumors were below 40 years. All of these tumors were 4 cm or larger in size. Two third of these tumors were invasive. Hormone receptor negativity and lymph node involvement was observed in 1 out of 3 cases, when performed. Clinicopathological and histological features of invasive and non-invasive tumors were compared and only lymph node involvement was found to be significantly more frequent in invasive tumors (p = 0.049). Median follow up duration was 18 months. All patients were alive and disease free except for a single patient who died of cerebrovascular accident. EPC has excellent clinical course. Invasion and high nuclear grade should be carefully searched for as these features determine tumor stage and treatment.
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- 2020
36. Outcome of Non-Malignant Papillary Lesions of the Breast on Core Biopsy: An Experience from a Tertiary Care Center in Pakistan
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Kulsoom Fatima, Shaista Afzal, and Muhammad Usman Tariq
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medicine.medical_specialty ,Non malignant ,030204 cardiovascular system & hematology ,Malignancy ,Tertiary care ,03 medical and health sciences ,0302 clinical medicine ,Biopsy ,medicine ,Carcinoma ,Pathology ,medicine.diagnostic_test ,business.industry ,ultrasound ,Ultrasound ,General Engineering ,medicine.disease ,Oncology ,breast papillary lesions ,Papilloma ,Radiology ,business ,Core biopsy ,030217 neurology & neurosurgery ,management - Abstract
Background Papillary lesions of the breast constitute a heterogeneous group ranging from non-malignant papillomas to papillary carcinoma. While surgical excision is recommended for atypical papilloma or papillary DCIS/ carcinoma on core biopsy, controversy persists in the management of benign papillomas which are diagnosed with core needle biopsy (CNB) since there are variable reported rates for tumor upgrade. The purpose of this study was to determine the outcome of papillary lesions of the breast diagnosed at image-guided CNB, after surgical excision or follow-up, and to identify potential predictors of high-risk lesions/malignancy on imaging. Materials and methods We retrospectively identified 52 non-malignant papillary lesions on core biopsy between January 2012 and June 2018. The outcome of surgical excision, as well as clinical and imaging features of these lesions, were assessed. The final histologic upgrade was recorded, and variables were compared between benign and atypical lesions on core biopsy as well as between upgraded and non-upgraded lesions after surgical excision. Results Thirty-six lesions out of 52 lesions were benign papillomas on core biopsy, while 16 were papillary lesions with ADH/DCIS. All of these lesions except four benign papillomas were excised. Of the 32 benign papillomas excised, 7 were upgraded to papilloma with ADH/DCIS and one to DCIS with the focus of invasion. Among the 16 atypical lesions excised, one was upgraded to papillary DCIS with a final upgrade rate of 17.3%. There was no statistically significant clinical or imaging feature among those that were upgraded on excision from those that were not upgraded. Conclusion Non-malignant papillary lesions have a significant upgrade rate. There are no reliable clinical or imaging features that can pre-surgically predict upgrade. Therefore, surgical excision of all papillary lesions is recommended for definitive diagnosis.
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- 2020
37. Bilateral Gonadoblastoma With Dysgerminoma in a Phenotypically Normal Female With 46XX Karyotype: Report of a Rare Case and Literature Review
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Zeeshan Uddin, Muhammad Abdur Raafey, Muhammad Abdulwaasey, Syeda Samia Fatima, and Muhammad Usman Tariq
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endocrine system ,Pathology ,medicine.medical_specialty ,Gonadoblastoma ,Gonadal dysgenesis ,030204 cardiovascular system & hematology ,03 medical and health sciences ,Cytokeratin ,0302 clinical medicine ,SALL4 ,Dysgerminoma ,Medicine ,46xx ,gonadal dysgenesis ,biology ,business.industry ,CD117 ,gonadoblastoma ,General Engineering ,medicine.disease ,karyotype ,Placental alkaline phosphatase ,medicine.anatomical_structure ,Oncology ,biology.protein ,Obstetrics/Gynecology ,business ,dysgerminoma ,030217 neurology & neurosurgery ,Germ cell - Abstract
Gonadoblastoma is a rare ovarian neoplasm which belongs to “germ cell-sex cord-stromal tumor” category. This tumor is frequently associated with invasive germ cell malignancy. It commonly arises in dysgenetic gonads of young individuals who are phenotypically females but possess 46XY karyotype. It has been rarely reported in females with normal phenotype and genotype. We herein describe a case of 10-year-old female who presented with abdominal pain, abdominal distention and fever. CT scan of the abdomen and pelvis revealed bilateral ovarian masses, ascites and pelvic and para-aortic lymphadenopathy. Serum lactate dehydrogenase levels were also elevated. She underwent left salpingo-oophorectomy, right ovarian biopsy, omentectomy and para-aortic lymphadenopathy. Microscopically, tumor showed in situ and invasive components. In situ component was arranged in nests and lobules formed by immature sertoli cells forming acini and encircling large polygonal primitive germ cells. Immature sertoli cells were positive for immunohitochemical (IHC) stains cytokeratin AE1/AE3, inhibin and calretinin, while germ cells were positive for SALL4, Oct 3/4, placental alkaline phosphatase (PLAP) and CD117. Invasive component was arranged in sheets of large-sized, polygonal-shaped primitive germ cells which were also positive for SALL4, Oct 3/4, PLAP and CD117 IHC stains. Hence, the diagnosis of “gonadoblastoma with dysgerminoma” was made. The tumor was limited to both ovaries. Cytogenetic analysis of peripheral blood revealed normal female 46XX karyotype. The patient received two cycles of adjuvant chemotherapy and was then lost to follow-up. We conclude that gonadoblastoma, although rare, should be considered as a differential diagnosis in ovarian tumors of young females. Invasive germ cell component should always be carefully searched for as it guides about treatment and predicts prognosis.
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- 2020
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38. Invasive Breast Carcinoma Arising in a Nipple Adenoma After 15 Years: Report of a Rare Case and Literature Review
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Muhammad Usman Tariq, Khurram Minhas, Naila Kayani, and Muhammad Abdulwaasey
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medicine.medical_specialty ,medicine.medical_treatment ,Benign Breast Neoplasm ,Nipple adenoma ,030204 cardiovascular system & hematology ,nipple discharge ,Nipple discharge ,03 medical and health sciences ,breast cancer ,0302 clinical medicine ,Breast cancer ,Pathology ,medicine ,business.industry ,General Engineering ,medicine.disease ,Radiation therapy ,Oncology ,Hormonal therapy ,Radiology ,medicine.symptom ,nipple adenoma ,Breast carcinoma ,business ,paget's disease ,030217 neurology & neurosurgery ,Mastectomy - Abstract
Nipple adenoma (NA) is a rare benign breast neoplasm that seldom co-exists with breast carcinoma (BC). Majority of these BC are separate from NA, and their origin from NA is an extremely rare event. We herein describe a case of 65-year-old female who had a painless lump for 15 years which increased in size and ulcerated for last six months. Microscopic examination of the wedge biopsy of nipple showed features of NA at superficial aspect and invasive carcinoma from it at the deeper aspect. The patient underwent mastectomy and axillary clearance, which revealed a 4-cm invasive breast carcinoma, no special type with axillary lymph node involvement. The patient received adjuvant chemotherapy, radiotherapy and adjuvant hormonal therapy. The patient is alive and disease-free after 36 months. NA should be carefully evaluated for co-existent BC because it completely changes the treatment plan and prognosis.
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- 2020
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39. Reliability and Validity of WATCH: Warwick Assessment InsTrument for Clinical TeacHing
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Muhammad Furqan Bari, Khalid Masood Gondol, Sonia Ijaz Haider, Iqbal Azam, and Muhammad Usman Tariq
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Students, Medical ,020205 medical informatics ,Psychometrics ,education ,Assessment instrument ,02 engineering and technology ,03 medical and health sciences ,0302 clinical medicine ,Cronbach's alpha ,Surveys and Questionnaires ,0202 electrical engineering, electronic engineering, information engineering ,Medicine ,Humans ,Pakistan ,030212 general & internal medicine ,Clinical teaching ,Reliability (statistics) ,Medical education ,business.industry ,Teaching ,Construct validity ,Reproducibility of Results ,General Medicine ,Variance (accounting) ,Test (assessment) ,Cross-Sectional Studies ,Friedman test ,business - Abstract
OBJECTIVE To determine the reliability, validity, feasibility, acceptability and perceived educational impact of WATCH: Warwick Assessment insTrument for Clinical teacHing among doctors in Pakistan. STUDY DESIGN Cross-sectional research study. PLACE AND DURATION OF STUDY The College of Physicians and Surgeons, Pakistan, from September 2018 to August 2019. METHODOLOGY Postgraduate trainees were asked to rate the clinical teaching sessions, using WATCH, which consists of 15 items. Percentage was used to calculate gender and participation from different specialties. Inter-item correlations of 15 items with individual mean scores, standard deviations and Cronbach's Alpha were reported, including Friedman test, in order to observe the scores across multiple conditions. The Hotelling's T2 test was used to test whether the answers provided by the study participants to the questionnaire were equal. Construct validity was determined using factor analysis while feasibility, acceptability, and educational impact was evaluated by seeking participants' feedback on five semi-structured questions. RESULTS More than 80% ranked WATCH from good to excellent. Oveall 8 items were perceived as excellent, while 7 items received rating of good. Inter-item correlation ranged from 0.61 to 0.81. Cronbach Alpha was reported to be 0.975, with significant difference in mean scores of different items (Friedman's Chi-Square=4285.54; p
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- 2020
40. Breast Imaging Chameleon: Pseudoangiomatous Stromal Hyperplasia Presenting as Breast Malignancy
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Kulsoom Fatima, Rabail Raza, and Muhammad Usman Tariq
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Breast biopsy ,Pseudoangiomatous stromal hyperplasia ,pseudoangiomatous stromal hyperplasia ,medicine.medical_specialty ,Axillary lymph nodes ,Breast imaging ,Breast malignancy ,030204 cardiovascular system & hematology ,Malignancy ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Pathology ,skin and connective tissue diseases ,breast ,medicine.diagnostic_test ,business.industry ,ultrasound ,Ultrasound ,General Engineering ,medicine.disease ,medicine.anatomical_structure ,Obstetrics/Gynecology ,Histopathology ,Radiology ,palpable lump ,benign ,business ,030217 neurology & neurosurgery ,malignancy - Abstract
Pseudoangiomatous stromal hyperplasia (PASH) is a benign mesenchymal proliferative lesion of the breast, often an incidental finding on breast biopsy specimens and rarely presents as a palpable lump. The case being reported is interesting as a lactating female presented with gross left breast enlargement due to a huge firm mass with skin thickening and palpable left axillary lymph nodes. A provisional diagnosis of left breast malignancy was made and the patient extensively worked up with ultrasound, CT scan, bone scan and core biopsy. The histopathology, however, revealed PASH of the breast. There was no invasive or in situ malignancy. The patient was successfully managed conservatively.
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- 2020
41. Androgen Receptor: Evaluation and Correlation with Recurrence and Clinicopathological Parameters in Papillary Urothelial Carcinomas of the Urinary Bladder
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Zubaida Fida Hussain, Naveen Faridi, Taimoor Khalid Janjua, Shazia Mumtaz, Muhammad Usman Tariq, Saad Saleem Qureshi, and Atif Ali Hashmi
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medicine.medical_specialty ,recurrence ,medicine.drug_class ,Urology ,030204 cardiovascular system & hematology ,03 medical and health sciences ,0302 clinical medicine ,Prostate ,androgen receptor ,Biopsy ,medicine ,Carcinoma ,Pathology ,urothelial carcinoma ,Urinary bladder ,Predictive marker ,medicine.diagnostic_test ,business.industry ,high grade papillary urothelial carcinoma ,General Engineering ,Androgen ,medicine.disease ,Miscellaneous ,Androgen receptor ,medicine.anatomical_structure ,Immunohistochemistry ,business ,030217 neurology & neurosurgery ,low grade papillary urothelial carcinoma - Abstract
Papillary urothelial carcinoma (PUC) is the most common malignant tumor of the urinary bladder. Urothelial tumors are notorious for frequent recurrences and follow a chronic relapsing course in most of the patients. In Pakistan, the incidence of PUC is showing a rising trend. Various immunohistochemical (IHC) markers including androgens have been studied as prognostic and predictive markers in PUC with conflicting results. Androgen is a steroid-based sex hormone and plays an important role in different body organs such as urinary bladder, prostate, muscles, and brain. We aimed to investigate the role of the IHC expression of androgen receptor (AR) as a predictor of recurrence in papillary urothelial carcinoma patients. Eighty-four patients were included in the study. Tissues from the biopsy specimens of these cases were stained with antibodies against AR; 17% of the cases demonstrated a positive AR IHC expression. The expression was slightly more common in low-grade carcinoma. The AR expression was not significantly associated with clinicopathological features. Recurrence was observed in 49% of the cases, and it was significantly more common in AR-negative cases (p-value: 0.025). Eighteen out of 19 patients who died of disease were AR- negative, but no statistical significance was observed. We conclude that the IHC expression of AR can be used as a predictive marker for PUC as it correlates with the recurrence rate.
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- 2020
42. Utility of Ultrasound and Mammography in Detection of Negative Axillary Nodal Metastasis in Breast Cancer
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Imrana Masroor, Kumail Khandwala, Summar Un-Nisa Abbasi, Anam Khan, and Muhammad Usman Tariq
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medicine.medical_specialty ,Axillary lymph nodes ,mammography ,Sentinel lymph node ,030204 cardiovascular system & hematology ,Metastasis ,03 medical and health sciences ,sentinel lymph node ,0302 clinical medicine ,Breast cancer ,lymphadenopathy ,Pathology ,medicine ,metastasis ,Mammography ,biopsy ,Lymph node ,medicine.diagnostic_test ,ultrasound ,business.industry ,General Engineering ,Axillary Lymph Node Dissection ,Sentinel node ,medicine.disease ,medicine.anatomical_structure ,General Surgery ,histopathology ,Radiology ,business ,030217 neurology & neurosurgery - Abstract
Objective The status of axillary lymph nodes is one of the most important prognostic factors in patients with breast cancer. A precise noninvasive evaluation of axillary lymph node status preoperatively, although challenging, is vital for optimization of the treatment plan for patients. The objective of our study was to assess the utility of ultrasound and mammography in detecting the absence of axillary lymph nodal metastasis in patients of breast cancer, taking histopathology as gold standard. Methods A cross-sectional study was conducted in the Department of Radiology, Aga Khan University Hospital, Karachi. All female patients between 20 and 95 years of age with a known diagnosis of breast cancer with mammographic and ultrasound imaging done at our institute were included. Patients with abnormal lymph nodes on mammography or on ultrasound, patients already operated for breast cancer, patients who already underwent axillary lymph node dissection and those whose histopathology reports were not available or who did not undergo surgery were excluded. Results A total of 262 women with breast carcinoma who had both ultrasound and mammography done and also had surgery performed at our institution were included. At final surgical pathology, a total of 45 of the 262 patients (17.2%) with breast carcinoma had one or more positive lymph nodes. Out of the total 262 patients, 217 patients were found to be true negatives as they had absent axillary nodal metastasis on imaging as well as on histopathology. In all, 45 out of 262 patients were found to be false negatives as they had absent axillary nodal metastasis on imaging; however, they were found to be positive for metastasis on histopathology. The negative predictive value was 82.8%. Patient age was considered as a factor that may influence the outcome of results; the patients were stratified into age ranges seven groups with the age range of 10 years, ranging from 26 to 95 years. Chi-square test showed a p-value of 0.148, which showed no significant difference in the effect of age on diagnosing the absence of metastasis by ultrasound and mammography. Conclusion Our study shows that ultrasound and mammography even when used in combination cannot safely exclude axillary metastasis and thus cannot eliminate the need for sentinel node biopsy.
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- 2020
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43. Histopathology of Cardiovascular System
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Sheema H Hasan and Muhammad Usman Tariq
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Clinical Practice ,medicine.medical_specialty ,Pathology ,medicine.anatomical_structure ,business.industry ,Disease spectrum ,cardiovascular system ,Medicine ,Pericardium ,Immunohistochemistry ,Histopathology ,business ,Endocardium - Abstract
The cardiovascular system (CVS) includes both the heart, i.e. endocardium, myocardium and pericardium, and vessels. Biopsies from these organs are relatively uncommon, and most cases actually originate from autopsies. Disease spectrum ranges from ‘inflammatory’, ‘ischaemic’ and ‘degenerative’ with a handful of primary and metastatic neoplasms involving the heart. Various distinct types of vasculopathies are also sometimes seen in clinical practice. In this chapter, morphological features on light microscopy and utility of special and immunohistochemical (IHC) stains, which are helpful in the workup of these lesions, are described in a compact fashion.
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- 2020
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44. Histopathology of Breast
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Romana Idrees, Muhammad Usman Tariq, and Naila Kayani
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Surgical pathology ,medicine.medical_specialty ,Breast cancer ,business.industry ,medicine ,Cancer ,Histopathology ,Disease ,Radiology ,medicine.disease ,business ,Core biopsy - Abstract
Breast biopsies are one of the most frequently submitted biopsies in any diagnostic surgical pathology practice as breast cancer is by and large the most common cancer among women worldwide. This chapter covers morphologic light microscopic features of most if not all disease entities. Focus is on conventional H&E stained slides, however where necessary immunohistochemical (IHC) stains are also included. Besides unequivocal benign and malignant neoplasms, a major challenge for pathologists is the interpretation of ‘borderline lesions’, where most controversies and difference of opinion arise in this era where most biopsies are small needle core biopsies with limited yield. This requires robust diagnostic criteria laid down by experts to minimize subjectivity. It is hoped that this resource will be helpful for trainees as well as for general diagnostic pathologists as a quick reference in their day-to-day practice and diagnostic challenges.
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- 2020
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45. Histopathology of Bone and Soft Tissue
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Nasir Ud Din, Muhammad Usman Tariq, and Shahid Pervez
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medicine.medical_specialty ,Pathology ,business.industry ,Molecular genetic testing ,medicine ,Pattern analysis ,Soft tissue ,Immunohistochemistry ,%22">Fish ,Histopathology ,Soft tissue pathology ,business ,Frequent use - Abstract
Bone and soft tissue pathology is considered to be one of the most challenging areas of diagnostic pathology. It requires not only radiologic films at hand but also frequent use of ancillary tests like special and immunohistochemical (IHC) stains. Many chromosomal translocations and other chromosomal abnormalities are hallmark of several of these tumours which require molecular genetic testing usually by using techniques as FISH. Hence an attempt is made to encompass not only light microscopic features and pattern analysis but also judicious use of special and IHC stains as well as FISH to describe and diagnose a distinct entity compatible with clinical presentation and radiologic findings.
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- 2020
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46. Frequency of Transducer-like Enhancer of Split 1 Immunohistochemical Expression in Synovial Sarcoma: An Institution-based Cross-sectional Study
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Madiha Bilal Qureshi, Muhammad Usman Tariq, Ahmed Raheem, Nasir Uddin, and Shahid Pervez
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medicine.medical_specialty ,Pathology ,H&E stain ,Malignant peripheral nerve sheath tumor ,030204 cardiovascular system & hematology ,synovial sarcoma ,03 medical and health sciences ,Cytokeratin ,0302 clinical medicine ,Monophasic Synovial Sarcoma ,Medicine ,business.industry ,tle1 ,General Engineering ,Histology ,medicine.disease ,Synovial sarcoma ,Oncology ,monophasic synovial sarcoma ,General Surgery ,poorly differentiated synovial sarcoma ,Histopathology ,Sarcoma ,business ,030217 neurology & neurosurgery - Abstract
Background Soft-tissue sarcomas comprise a diverse group of sarcomas with characteristic histologic features. However, histology alone is not adequate for a definitive diagnosis for many tumors. In such cases, immunohistochemistry (IHC) plays a key role in determining the line of differentiation and exact characterization. Transducer-like enhancer of split 1 (TLE1) has been recently described as a novel marker for synovial sarcoma (SS). Its high sensitivity and specificity make it a potential marker that distinguishes SS from histologic mimics such as malignant peripheral nerve sheath tumor (MPNST), Ewing's sarcoma (ES), and fibrosarcomatous dermatofibrosarcoma protuberans (FS-DFSP). The objective of our study was to assess the frequency of TLE1 immunohistochemical expression on SS cases of various subtypes. Methods This cross-sectional study was conducted at the Department of Histopathology, Aga Khan University, Karachi, Pakistan from February 3, 2018 to February 10, 2019. Tissue samples of 89 SS cases were selected for this study. Tumor sections were stained with hematoxylin and eosin (H&E), cytokeratin AEI/AE3 (CKAE1/AE3), epithelial membrane antigen (EMA), and TLE1 immunohistochemical stain. TLE1 expression was assessed based on the Remmele scoring system. Results Tissue samples of 89 SS cases were processed for the study. Mean (±) standard deviation (SD) of age was 25 (±7.36) years. Male:female ratio was 1.1:1. Of the 89 SS cases, 42 (47.2%) were monophasic, six (6.7%) were biphasic, and 41 (46.1%) were poorly differentiated. All the 89 cases showed positivity for TLE1 immunostain: 86 (96.6%) cases showed strong positivity, one (1.1%) case showed moderate expression, and two (2.2%) showed weak positivity. Conclusion This study shows that TLE1 is a highly sensitive immunostain for SS irrespective of the histologic type. However, it may show weak-to-moderate staining in poorly differentiated types. No statistically significant association was seen with respect to age group, gender, or type of SS.
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- 2019
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47. Molecular and radiological characterization of glioblastoma multiforme using magnetic resonance imaging
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Adnan Abdul Jabbar, Fazal Manzoor Arain, Anjiya Shaikh, Sheema H Hassan, Syed Ather Enam, Fatima Mubarak, Ghulam Haider, Muhammad Shahzad Shamim, Muhammad Faraz Raghib, Muhammad Waqas, and Muhammad Usman Tariq
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Pathology ,medicine.medical_specialty ,Stem cell marker ,03 medical and health sciences ,0302 clinical medicine ,Biopsy ,medicine ,Effective diffusion coefficient ,Humans ,biology ,medicine.diagnostic_test ,Oncogene ,business.industry ,Brain Neoplasms ,CD44 ,Magnetic resonance imaging ,Magnetic Resonance Imaging ,Radiography ,Diffusion Magnetic Resonance Imaging ,030220 oncology & carcinogenesis ,biology.protein ,Immunohistochemistry ,Surgery ,Neurology (clinical) ,Stem cell ,business ,Glioblastoma ,030217 neurology & neurosurgery - Abstract
Background Glioblastoma multiforme (GBM) is the most malignant, aggressive and common form of primary brain cancer. Currently, GBM is considered to be a homogenous mass as all its margins are treated equally at the time of resection. However, it is not known whether radiologically distinct regions of GBM are also distinct at molecular level. We conducted this study to see if radiologically distinct regions were also different at the molecular level. Methods In 20 patients, MRI derived variance known as Apparent Diffusion Coefficient (ADC) was plotted against Contrast Enhancement (CE). Four radiologically distinct regions were identified: 1) high ADC and low CE; 2) low ADC and low CE; 3) high ADC and high CE; and 4) low ADC and high CE. Biopsy samples were collected from these four regions of interest in each patient and immunohistochemistry was conducted to characterize cellular features and identify oncogene and stem cell marker expressing cells. Results Markedly increased nuclear pleomorphism, cellularity and necrosis were seen in region 2. Oncogene IDH was expressed in all regions, however, it was highest in region 4. Stem cell marker, CD44 expression was highest in region 1 and lowest in region 2 and 3. The expression of CD133 was highest in region 3. Conclusions This study shows that ADC/CE plot can divide GBM into four regions, whose heterogeneity is evidenced by differential expression of nuclear pleomorphism, necrosis, cellularity and mitotic rate as well as the expression of oncogene and stem cell markers.
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- 2019
48. Solid papillary carcinoma of breast; a detailed clinicopathological study of 65 cases of an uncommon breast neoplasm with literature review
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Muhammad Usman Tariq, Romana Idress, Naila Kayani, and Madiha Bilal Qureshi
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Male ,medicine.medical_specialty ,Disease free ,Breast Neoplasms ,Disease ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Internal Medicine ,Carcinoma ,medicine ,Neoplasm ,Humans ,Neoplasm Invasiveness ,Nuclear grade ,Aged ,Retrospective Studies ,business.industry ,Clinical course ,Distant metastasis ,Middle Aged ,medicine.disease ,Carcinoma, Papillary ,Oncology ,030220 oncology & carcinogenesis ,Surgery ,Female ,Papillary carcinoma ,Radiology ,business - Abstract
Solid papillary carcinoma (SPC) is an uncommon breast tumor whose prognosis depends on invasive component. We studied clinicopathological features of SPC by reviewing 65 cases. Invasive component was seen in 75.4% cases. Almost all tumors with grade III nuclei had invasive component. Mean patients' age of invasive tumors was significantly higher than that of non-invasive tumors (P = .036). All patients were alive and disease free except for a single patient who developed distant metastasis and died of disease. SPC have excellent clinical course. Careful search for invasive component is mandatory, especially in tumors with older patient's age and higher nuclear grade.
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- 2019
49. The discrepancy between admission and discharge diagnoses: Underlying factors and potential clinical outcomes in a low socioeconomic country
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Simra Riffat, Samar Fatima, Safia Awan, Sara Shamim, Amna Subhan Butt, and Muhammad Usman Tariq
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Male ,Critical Care and Emergency Medicine ,Health Care Providers ,law.invention ,Patient Admission ,Endocrinology ,Medical Conditions ,0302 clinical medicine ,law ,Diagnosis ,Health care ,Medicine and Health Sciences ,Pakistan ,Medical Personnel ,030212 general & internal medicine ,Medical diagnosis ,Aged, 80 and over ,Multidisciplinary ,medicine.diagnostic_test ,Middle Aged ,Intensive care unit ,Patient Discharge ,Hospitals ,Intensive Care Units ,Professions ,Treatment Outcome ,Research Design ,Medicine ,Female ,Emergency Service, Hospital ,Research Article ,Adult ,Patient Transfer ,medicine.medical_specialty ,Adolescent ,Endocrine Disorders ,Science ,MEDLINE ,Physical examination ,Research and Analysis Methods ,Young Adult ,03 medical and health sciences ,Diagnostic Medicine ,Physicians ,Diabetes Mellitus ,medicine ,Humans ,Medical history ,Developing Countries ,Aged ,Retrospective Studies ,business.industry ,030208 emergency & critical care medicine ,Retrospective cohort study ,Emergency department ,Health Care ,Socioeconomic Factors ,Health Care Facilities ,Metabolic Disorders ,Instructors ,People and Places ,Emergency medicine ,Diabetes Diagnosis and Management ,Population Groupings ,business - Abstract
Objective The discrepancy between admission and discharge diagnosis can lead to possible adverse patient outcomes. There are gaps in integrated studies, and less is understood about its characteristics and effects. Therefore, this study was conducted to determine the frequency, characteristics, and outcomes of diagnostic discrepancies at admission and discharge. Design and data sources This retrospective study reviewed the admitting and discharge diagnoses of adult patients admitted at Aga Khan University Hospital (AKUH), Internal Medicine Department between October 2018 and February 2019. The frequency and outcomes of discrepancies in patient diagnoses were noted among Emergency Department (ED) physician versus admitting physician, admitting physician versus discharge physician, and ED physician versus discharge physician for the full match, partial match, and mismatch diagnoses. The studied outcomes included interdepartmental transfer, Intensive Care Unit (ICU) transfer, in-hospital mortality, readmission within 30 days, and the length of stay. For simplicity, we only analyzed the factors for the discrepancy among ED physicians and discharge physicians. Results Out of 537 admissions, there were 25.3–27.2% admissions with full match diagnoses while 18.6–19.4% and 45.3–47.9% had mismatch and partial match diagnoses respectively. The discrepancy resulted in an increased number of interdepartmental transfers (5–5.8%), ICU transfers (5.6–8.7%), in-hospital mortality (8–11%), and readmissions within 30 days in ED (14.4%-16.7%). A statistically significant difference was observed for the ward’s length of stay with the most prolonged stay in partially matched diagnoses (6.3 ± 5.4 days). Among all the factors that were evaluated for the diagnostic discrepancy, older age, multi-morbidities, level of trainee clerking the patient, review by ED faculty, incomplete history, and delay in investigations at ED were associated with significant discrepant diagnoses. Conclusions Diagnostic discrepancies are a relevant and significant healthcare problem. Fixed patient or physician characteristics do not readily predict diagnostic discrepancies. To reduce the diagnostic discrepancy, emphasis should be given to good history taking and thorough physical examination. Patients with older age and multi-morbidity should receive significant consideration.
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- 2021
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50. Use of medical abbreviations and acronyms: knowledge among medical students and postgraduates
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Sadia Arshad, Ali Bin Sarwar Zubairi, Waqar Kashif, Muhammad Usman Tariq, Qamar Masood, Safia Awan, Shahab Abid, Saeed Hamid, and Ayeesha Kamran Kamal
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Pediatrics ,medicine.medical_specialty ,Students, Medical ,Cross-sectional study ,Cardiology ,Subspecialty ,03 medical and health sciences ,Patient safety ,Endocrinology ,0302 clinical medicine ,Surveys and Questionnaires ,030225 pediatrics ,Pulmonary medicine ,Health care ,Internal Medicine ,Medical Staff, Hospital ,Pulmonary Medicine ,medicine ,Humans ,Abbreviations as Topic ,Pakistan ,030212 general & internal medicine ,Students medical ,business.industry ,Gastroenterology ,Internship and Residency ,General Medicine ,Cross-Sectional Studies ,Neurology ,Nephrology ,Family medicine ,Clinical Competence ,Patient Safety ,Clinical competence ,business - Abstract
Introduction Inappropriate use of abbreviations and acronyms in healthcare has become an international patient safety issue. The aim of this study was to assess the knowledge of medical abbreviations and acronyms among residents of the department of medicine at a tertiary-care hospital. Methods Internal medicine residents (IMRs), subspecialty residents (SRs) and students were asked to complete a self-administered questionnaire which comprised standard abbreviations used in medicine and its various subspecialties. Scores obtained by the residents were classified into three categories: >70% correct answers; 50–69% correct answers; Results A total of 77 IMRs, SRs and medical students participated. Overall, good responses were achieved by 53 (68.8%), 16 (20.8%) attained satisfactory responses, and eight (10.4%) had unsatisfactory scores. The majority of SRs achieved good responses (19/22 (86%)), followed by IMRs (30/40 (75%)) and students (4/15 (26.7%)). Evaluation of their knowledge taken from the list of ‘do not use’ abbreviations showed that 89.6% reported using ‘Q.D.’ instead of ‘once a day’, and 93% used ‘IU’ instead of the entire phrase ‘international unit’. The top five ‘not to use’ abbreviations were ZnSO4, µg, MgSO4, IU and SC, with the frequency 100%, 96%, 94.8%, 93% and 90%, respectively. Conclusions This study showed that there is a knowledge gap among trainees in medicine regarding the meaning and usage of common medical abbreviations. We therefore recommend proper education of trainees in medicine to ensure they understand the meaning of abbreviations and are aware of the list of ‘do not use’ abbreviations.
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- 2016
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