1. Application of a cost-effective DNA extraction protocol for screening transgenic and CRISPR-edited primary goat cells
- Author
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Louhanna Pinheiro Rodrigues Teixeira, Francisco Eder de Moura Lopes, André Saraiva Leão Marcelo Antunes, Matheus Soares Alves, André Marrocos Miranda, Saul Gaudencio Neto, Leonardo Tondello Martins, Ana Cristina de Oliveira Monteiro Moreira, Kaio Cesar Simiano Tavares, and René Massimiliano Marsano
- Subjects
Medicine ,Science - Abstract
The genotyping of genetically-modified cells is a crucial step in studies of transgenics and genomic editing with systems such as CRISPR/Cas. The detection of genome editing events can be directly related to the genotyping methodology used, which is influenced by its costs, since many experiments require the analysis of a large number of samples. The aim of this study was to compare the performance of direct lysis methods of genomic DNA (gDNA) extraction for the detection of knockins and knockouts in primary goat cells. Initially, three gDNA extraction protocols (protocol A, heat denaturation/freeze-thaw in water; protocol B, heat denaturation/proteinase K; and protocol C, CellsDirect Kit) were tested using different quantities (1,000, 5,000 and 10,000 cells) and types of goat primary cells (fibroblasts and goat mammary epithelial cells—GMECs) for subsequent validation by PCR amplification of small (GAPDH) and large amplicons (hLF transgene). All protocols were successful in the detection of the small amplicon; however, in GMECs, only protocol B resulted efficient amplification (protocol A—0%, protocol B—93%, protocol C—13.33%, P
- Published
- 2020