1. Targeted gene sequencing of Lynch syndrome–related and sporadic endometrial carcinomas
- Author
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Roberta Cerutti, Nora Sahnane, Laura Mannarino, Laura Libera, Sergio Marchini, Cristina Riva, Daniela Furlan, Anna Maria Chiaravalli, and Ilaria Craparotta
- Subjects
0301 basic medicine ,ARID1A ,Base Pair Mismatch ,DNA Mutational Analysis ,medicine.disease_cause ,0302 clinical medicine ,Endometrial cancer ,Lynch syndrome ,MLH1 silencing ,MMR defect ,Targeted sequencing ,2734 ,High-Throughput Nucleotide Sequencing ,Nuclear Proteins ,Middle Aged ,Immunohistochemistry ,DNA-Binding Proteins ,Phenotype ,030220 oncology & carcinogenesis ,Female ,Microsatellite Instability ,DNA mismatch repair ,KRAS ,MutL Protein Homolog 1 ,Adult ,congenital, hereditary, and neonatal diseases and abnormalities ,Biology ,Pathology and Forensic Medicine ,Proto-Oncogene Proteins p21(ras) ,03 medical and health sciences ,Predictive Value of Tests ,Biomarkers, Tumor ,medicine ,Humans ,PTEN ,Genetic Predisposition to Disease ,Gene Silencing ,Epigenetics ,Aged ,Gene Expression Profiling ,Microsatellite instability ,medicine.disease ,Colorectal Neoplasms, Hereditary Nonpolyposis ,digestive system diseases ,Endometrial Neoplasms ,030104 developmental biology ,MSH2 ,Mutation ,Cancer research ,biology.protein ,Transcription Factors - Abstract
Summary About one-third of endometrial carcinomas (ECs), mainly of endometrioid histology, harbor the mismatch repair (MMR) defects and microsatellite instability (MSI). Among these, ECs arising in women with Lynch syndrome (LS) account for a large proportion. To date, no somatic genetic analyses have been published comparing LS-ECs with sporadic ECs. In this work, we examined the mutational profiles of a well-characterized series of sporadic and LS-related ECs, performing exonic targeted sequencing of 16 genes mainly involved in MSI ECs. Next-generation sequencing analysis was performed in 35 ECs on the MiSeq platform (Illumina, San Diego, CA), and the mutational profile was analyzed integrating molecular and immunohistochemical data. PTEN, ARID1A, and ARID2 were the most frequently mutated genes regardless of MSI status or family history. MSI ECs showed a higher mutational load than MMR-proficient cases, exhibiting an MMR-deficient mutational signature. Among MSI tumors, LS-related and sporadic ECs exhibited similar mutational profiles, with MSH2 as the most commonly mutated gene. KRAS mutations seemed to be more common in sporadic MSI ECs than in LS-related ECs even if further studies are needed to confirm this finding. MMR-deficient ECs carried a higher mutational load and an excess of C>T transitions compared with MMR-proficient ECs, suggesting that the use of a small gene panel may be adequate to highlight significant differences between these 2 groups. An integrated analysis of genetic and epigenetic features of LS-related and sporadic ECs provides useful insights into disease biology and diagnostic classification of these tumors.
- Published
- 2018
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