Yongyong Shi, Ji Yeob Choi, Emily Adler, Beth Y. Karlan, Kate Lawrenson, Sue Park, Simon A. Gayther, Christopher I. Amos, Ellen L. Goode, Keitaro Matsuo, Paul D.P. Pharoah, Noor Azmi Mat Adenan, Xiao-Ou Shu, Weihua Jia, Rosario I. Corona, Kang Shan, Soo-Hwang Teo, Yin L. Woo, Kexin Chen, Jennifer A. Doherty, Felipe Segato, Simon G. Coetzee, Gang J. Jin, Marcos A. S. Fonseca, Dennis J. Hazelett, Pamela J. Thompson, Wei Zheng, Thomas A. Sellers, Byoung-Gie Kim, L Yan, Andrew Berchuck, Weiva Sieh, Michael E. Carney, Qingyi Wei, Fengju Song, Boyoung Park, Siddhartha Kar, Georgia Chenevix-Trench, Houtan Noushmehr, Lian Li, Catherine M. Phelan, Boon K. Lim, Juyeon Lee, Norma Rodriguez-Malave, Celeste Leigh Pearce, Marc T. Goodman, Jonathan Tyrer, Nhu D. Le, Ji-Hei Seo, Lynne R. Wilkens, Mika Mizuno, and Matthew L. Freedman
OBJECTIVE. Genome-wide association studies (GWASs) for epithelial ovarian cancer (EOC) have focused largely on populations of European ancestry. We aimed to identify common germline variants associated with EOC risk in Asian women. METHODS. Genotyping was performed as part of the OncoArray project. Samples with >60% Asian ancestry were included in the analysis. Genotyping was performed on 533,631 SNPs in 3238 Asian subjects diagnosed with invasive or borderline EOC and 4083 unaffected controls. After imputation, genotypes were available for 11,595,112 SNPs to identify associations. RESULTS. At chromosome 6p25.2, SNP rs7748275 was associated with risk of serous EOC (odds ratio [OR] = 1.34, P = 8.7 × 10(−9)) and high-grade serous EOC (HGSOC) (OR = 1.34, P = 4.3 × 10(−9)). SNP rs6902488 at 6p25.2 (r(2) = 0.97 with rs7748275) lies in an active enhancer and is predicted to impact binding of STAT3, P300 and ELF1. We identified additional risk loci with low Bayesian false discovery probability (BFDP) scores, indicating they are likely to be true risk associations (BFDP