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Given two four-dimensional symplectic manifolds, together with knots in their boundaries, we define an ``anchored symplectic embedding'' to be a symplectic embedding, together with a two-dimensional symplectic cobordism between the knots (in the four-dimensional cobordism determined by the embedding). We use techniques from embedded contact homology to determine quantitative critera for when anchored symplectic embeddings exist, for many examples of toric domains. In particular we find examples where ordinarily symplectic embeddings exist, but they cannot be upgraded to anchored symplectic embeddings unless one enlarges the target domain., Comment: 30 pages, 3 figures

We define a dynamical zeta function for nondegenerate Liouville domains, in terms of Reeb dynamics on the boundary. We use filtered equivariant symplectic homology to (i) extend the definition of the zeta function to a more general class of "dynamically tame" Liouville domains, and (ii) show that the zeta function of a dynamically tame Liouville domain is invariant under exact symplectomorphism of the interior. As an application, we find examples of open domains in R^4, arbitrarily close to a ball, which are not symplectomorphic to open star-shaped toric domains., Comment: 41 pages; v3 has minor corrections to the introduction

We consider dynamically convex (star-shaped) domains in a symplectic vector space of dimension 4. For such a domain, a "Hopf orbit" is a closed characteristic in the boundary which is unknotted and has self-linking number -1. We show that the minimum action among Hopf orbits exists (without any nondegeneracy hypothesis) and defines a symplectic capacity for dynamically convex domains in four dimensions. We further show that this capacity agrees with the first ECH capacity for dynamically convex domains. Combined with a result of Edtmair, this implies that for dynamically convex domains in four dimensions, the first ECH capacity agrees with the cylinder capacity., Comment: 24 pages, minor corrections

We prove that every Reeb flow on a closed connected three-manifold has either two or infinitely many simple periodic orbits, assuming that the associated contact structure has torsion first Chern class. As a special case, we prove a conjecture of Hofer-Wysocki-Zehnder published in 2003 asserting that a smooth and autonomous Hamiltonian flow on $\mathbb{R}^4$ has either two or infinitely many simple periodic orbits on any regular compact connected energy level that is transverse to the radial vector field. Other corollaries settle some old problems about Finsler metrics: we show that every Finsler metric on $S^2$ has either two or infinitely many prime closed geodesics; and we show that a Finsler metric on $S^2$ with at least one closed geodesic that is not irrationally elliptic must have infinitely many prime closed geodesics. The novelty of our work is that we do not make any nondegeneracy hypotheses., Comment: minor expository revisions

We consider an area-preserving diffeomorphism of a compact surface, which is assumed to be an irrational rotation near each boundary component. A finite set of periodic orbits of the diffeomorphism gives rise to a braid in the mapping torus. We show that under some nondegeneracy hypotheses, the isotopy classes of braids that arise from finite sets of periodic orbits are stable under Hamiltonian perturbations that are small with respect to the Hofer metric. A corollary is that for a Hamiltonian isotopy class of such maps, the topological entropy is lower semicontinuous with respect to the Hofer metric. This extends results of Alves-Meiwes for braids arising from finite sets of fixed points of Hamiltonian surface diffeomorphisms., Comment: v3 modified the cobordism setup to correct an error in the choice of almost complex structure

In a previous paper, we defined an "elementary" alternative to the ECH capacities of symplectic four-manifolds, using max-min energy of holomorphic curves subject to point constraints, and avoiding the use of Seiberg-Witten theory. In the present paper we use a variant of this construction to define an alternative to the ECH spectrum of a contact three-manifold. The alternative spectrum has applications to Reeb dynamics in three dimensions. In particular, we adapt ideas from a previous joint paper with Edtmair to obtain quantitative closing lemmas for Reeb vector fields in three dimensions. For the example of an irrational ellipsoid, we obtain a sharp quantitative closing lemma., Comment: v3 has minor corrections and clarifications and added a reference

The ECH capacities are a sequence of numerical invariants of symplectic four-manifolds which give (sometimes sharp) obstructions to symplectic embeddings. These capacities are defined using embedded contact homology, and establishing their basic properties currently requires Seiberg-Witten theory. In this note we define a new sequence of symplectic capacities in four dimensions using only basic notions of holomorphic curves. The new capacities satisfy the same basic properties as ECH capacities and agree with the ECH capacities for the main examples for which the latter have been computed, namely convex and concave toric domains. The new capacities are also useful for obstructing symplectic embeddings into closed symplectic four-manifolds. This work is inspired by a recent preprint of McDuff-Siegel giving a similar elementary alternative to symplectic capacities from rational SFT., Comment: v3: minor corrections and clarifications

We develop the theory of spectral invariants in periodic Floer homology (PFH) of area-preserving surface diffeomorphisms. We use this theory to prove $C^\infty$ closing lemmas for certain Hamiltonian isotopy classes of area-preserving surface diffeomorphisms. In particular, we show that for a $C^\infty$-generic area-preserving diffeomorphism of the torus, the set of periodic points is dense. Our closing lemmas are quantitative, asserting roughly speaking that for a given Hamiltonian isotopy, within time $\delta$ a periodic orbit must appear of period $O(\delta^{-1})$. We also prove a "Weyl law" describing the asymptotic behavior of PFH spectral invariants., Comment: v5: various minor corrections, clarifications, and expanded explanations in response to referee comments

It is known that every contact form on a closed three-manifold has at least two simple Reeb orbits, and a generic contact form has infinitely many. We show that if there are exactly two simple Reeb orbits, then the contact form is nondegenerate. Combined with a previous result, this implies that the three-manifold is diffeomorphic to the three-sphere or a lens space, and the two simple Reeb orbits are the core circles of a genus one Heegaard splitting. We also obtain further information about the Reeb dynamics and the contact structure. For example the Reeb flow has a disk-like global surface of section and so its dynamics are described by a pseudorotation; the contact struture is universally tight; and in the case of the three-sphere, the contact volume and the periods and rotation numbers of the simple Reeb orbits satisfy the same relations as for an irrational ellipsoid., Comment: 29 pages; v4 has minor edits, to appear in Geometry and Topology

We study the combinatorial Reeb flow on the boundary of a four-dimensional convex polytope. We establish a correspondence between "combinatorial Reeb orbits" for a polytope, and ordinary Reeb orbits for a smoothing of the polytope, respecting action and Conley-Zehnder index. One can then use a computer to find all combinatorial Reeb orbits up to a given action and Conley-Zehnder index. We present some results of experiments testing Viterbo's conjecture and related conjectures. In particular, we have found some new examples of polytopes with systolic ratio $1$., Comment: 57 pages, 3 figures. Small edits, clarifications and revisions made throughout

A strong version of a conjecture of Viterbo asserts that all normalized symplectic capacities agree on convex domains. We review known results showing that certain specific normalized symplectic capacities agree on convex domains. We also review why all normalized symplectic capacities agree on $S^1$-invariant convex domains. We introduce a new class of examples called "monotone toric domains", which are not necessarily convex, and which include all dynamically convex toric domains in four dimensions. We prove that for monotone toric domains in four dimensions, all normalized symplectic capacities agree. For monotone toric domains in arbitrary dimension, we prove that the Gromov width agrees with the first equivariant capacity. We also study a family of examples of non-monotone toric domains and determine when the conclusion of the strong Viterbo conjecture holds for these examples. Along the way we compute the cylindrical capacity of a large class of "weakly convex toric domains" in four dimensions., Comment: 21 pages, 5 figures; v3: minor corrections

The ECH capacities are a sequence of real numbers associated to any symplectic four-manifold, which are monotone with respect to symplectic embeddings. It is known that for a compact star-shaped domain in R^4, the ECH capacities asymptotically recover the volume of the domain. We conjecture, with a heuristic argument, that generically the error term in this asymptotic formula converges to a constant determined by a "Ruelle invariant" which measures the average rotation of the Reeb flow on the boundary. Our main result is a proof of this conjecture for a large class of toric domains. As a corollary, we obtain a general obstruction to symplectic embeddings of open toric domains with the same volume. For more general domains in R^4, we bound the error term with an improvement on the previously known exponent from 2/5 to 1/4., Comment: v3: updated references, to appear in J. Fixed Point Theory and Applications

In a previous paper, we showed that the original definition of cylindrical contact homology, with rational coefficients, is valid on a closed three-manifold with a dynamically convex contact form. However we did not show that this cylindrical contact homology is an invariant of the contact structure. In the present paper, we define "nonequivariant contact homology" and "S^1-equivariant contact homology", both with integer coefficients, for a contact form on a closed manifold in any dimension with no contractible Reeb orbits. We prove that these contact homologies depend only on the contact structure. Our construction uses Morse-Bott theory and is related to the positive S^1-equivariant symplectic homology of Bourgeois-Oancea. However, instead of working with Hamiltonian Floer homology, we work directly in contact geometry, using families of almost complex structures. When cylindrical contact homology can also be defined, it agrees with the tensor product of the S^1-equivariant contact homology with Q. We also present examples showing that the S^1-equivariant contact homology contains interesting torsion information. In a subsequent paper we will use obstruction bundle gluing to extend the above story to closed three-manifolds with dynamically convex contact forms, which in particular will prove that their cylindrical contact homology has a lift to integer coefficients which depends only on the contact structure., Comment: 93 pages; v3 corrected a typo and added a reference to the introduction; to appear in Journal of Topology

In various situations in Floer theory, one extracts homological invariants from "Morse-Bott" data in which the "critical set" is a union of manifolds, and the moduli spaces of "flow lines" have evaluation maps taking values in the critical set. This requires a mix of analytic arguments (establishing properties of the moduli spaces and evaluation maps) and formal arguments (defining or computing invariants from the analytic data). The goal of this paper is to isolate the formal arguments, in the case when the critical set is a union of circles. Namely, we state axioms for moduli spaces and evaluation maps (encoding a minimal amount of analytical information that one needs to verify in any given Floer-theoretic situation), and using these axioms we define homological invariants. More precisely, we define a (almost) category of "Morse-Bott systems". We construct a "cascade homology" functor on this category, based on ideas of Bourgeois and Frauenfelder, which is "homotopy invariant". This machinery is used in our work on cylindrical contact homology., Comment: 48 pages (v3 has minor clarifications, mainly at the end, following referee's suggestions)

We use positive S^1-equivariant symplectic homology to define a sequence of symplectic capacities c_k for star-shaped domains in R^{2n}. These capacities are conjecturally equal to the Ekeland-Hofer capacities, but they satisfy axioms which allow them to be computed in many more examples. In particular, we give combinatorial formulas for the capacities c_k of any "convex toric domain" or "concave toric domain". As an application, we determine optimal symplectic embeddings of a cube into any convex or concave toric domain. We also extend the capacities c_k to functions of Liouville domains which are almost but not quite symplectic capacities., Comment: 63 pages

We prove that every nondegenerate contact form on a closed connected three-manifold, such that the associated contact structure has torsion first Chern class, has either two or infinitely many simple Reeb orbits. By previous results it follows that under the above assumptions, there are infinitely many simple Reeb orbits if the three-manifold is not the three-sphere or a lens space. We also show that for non-torsion contact structures, every nondegenerate contact form has at least four simple Reeb orbits., Comment: 42 pages, minor corrections and expository improvements

Given an area-preserving diffeomorphism of the closed unit disk which is a rotation near the boundary, one can naturally define an "action" function on the disk which agrees with the rotation number on the boundary. The Calabi invariant of the diffeomorphism is the average of the action function over the disk. Given a periodic orbit of the diffeomorphism, its "mean action" is defined to be the average of the action function over the orbit. We show that if the Calabi invariant is less than the boundary rotation number, then the infimum over periodic orbits of the mean action is less than or equal to the Calabi invariant. The proof uses a new filtration on embedded contact homology determined by a transverse knot, which might be of independent interest. (An analogue of this filtration can be defined for any other version of contact homology in three dimensions that counts holomorphic curves.), Comment: 34 pages; v2 has minor corrections and clarifications and an additional reference; v3 has minor corrections following referee's suggestions

ECH (embedded contact homology) capacities give obstructions to symplectically embedding one four-dimensional symplectic manifold with boundary into another. These obstructions are known to be sharp when the domain and target are ellipsoids (proved by McDuff), and more generally when the domain is a "concave toric domain" and the target is a "convex toric domain" (proved by Cristofaro-Gardiner). However ECH capacities often do not give sharp obstructions, for example in many cases when the domain is a polydisk. This paper uses more refined information from ECH to give stronger symplectic embedding obstructions when the domain is a polydisk, or more generally a convex toric domain. We use these new obstructions to reprove a result of Hind-Lisi on symplectic embeddings of a polydisk into a ball, and generalize this to obstruct some symplectic embeddings of a polydisk into an ellipsoid. We also obtain a new obstruction to symplectically embedding one polydisk into another, in particular proving the four-dimensional case of a conjecture of Schlenk., Comment: 41 pages; v4: a couple of minor corrections and clarifications

We show that for dynamically convex contact forms in three dimensions, the cylindrical contact homology differential d can be defined by directly counting holomorphic cylinders for a generic almost complex structure, without any abstract perturbation of the Cauchy-Riemann equation. We also prove that d^2 = 0. Invariance of cylindrical contact homology in this case can be proved using S^1-dependent almost complex structures, similarly to work of Bourgeois-Oancea; this will be explained in another paper., Comment: v3: corrected Lemma 2.5(b), to appear in Journal of Symplectic Geometry

ECH capacities give obstructions to symplectically embedding one symplectic four-manifold with boundary into another. We compute the ECH capacities of a large family of symplectic four-manifolds with boundary, called "concave toric domains". Examples include the (nondisjoint) union of two ellipsoids in $\mathbb{R}^4$. We use these calculations to find sharp obstructions to certain symplectic embeddings involving concave toric domains. For example: (1) we calculate the Gromov width of every concave toric domain; (2) we show that many inclusions of an ellipsoid into the union of an ellipsoid and a cylinder are "optimal"; and (3) we find a sharp obstruction to ball packings into certain unions of an ellipsoid and a cylinder., Comment: 31 pages, 2 figures; fixed one typo, updated references, to appear in Journal of Topology

These notes give an introduction to embedded contact homology (ECH) of contact three-manifolds, gathering together many basic notions which are scattered across a number of papers. We also discuss the origins of ECH, including various remarks and examples which have not been previously published. Finally, we review the recent application to four-dimensional symplectic embedding problems. This article is based on lectures given in Budapest and Munich in the summer of 2012, a series of accompanying blog postings at floerhomology.wordpress.com, and related lectures at UC Berkeley in Fall 2012. There is already a brief introduction to ECH in the 2010 ICM proceedings, but the present notes give much more background and detail., Comment: 88 pages (v2 has tiny corrections)

In a previous paper, the second author used embedded contact homology (ECH) of contact three-manifolds to define "ECH capacities" of four-dimensional symplectic manifolds. In the present paper we prove that for a four-dimensional Liouville domain with all ECH capacities finite, the asymptotics of the ECH capacities recover the symplectic volume. This follows from a more general theorem relating the volume of a contact three-manifold to the asymptotics of the amount of symplectic action needed to represent certain classes in ECH. The latter theorem was used by the first and second authors to show that every contact form on a closed three-manifold has at least two embedded Reeb orbits., Comment: 29 pages; minor corrections and clarifications

We show that every (possibly degenerate) contact form on a closed three-manifold has at least two embedded Reeb orbits. We also show that if there are only finitely many embedded Reeb orbits, then their symplectic actions are not all integer multiples of a single real number; and if there are exactly two embedded Reeb orbits, then the product of their symplectic actions is less than or equal to the contact volume of the manifold. The proofs use a relation between the contact volume and the asymptotics of the amount of symplectic action needed to represent certain classes in embedded contact homology, recently proved by the authors and V. Ramos., Comment: 13 pages; minor corrections, updated references

In "Proof of the Arnold chord conjecture in three dimensions I", we deduced the Arnold chord conjecture in three dimensions from another result, which asserts that an exact symplectic cobordism between contact three-manifolds induces a map on (filtered) embedded contact homology satisfying certain axioms. The present paper proves the latter result, thus completing the proof of the three-dimensional chord conjecture. We also prove that filtered embedded contact homology does not depend on the choice of almost complex structure used to define it., Comment: v2 has minor corrections; to appear in Geometry and Topology

We survey some recent progress on understanding when one four-dimensional symplectic manifold can be symplectically embedded into another. In 2010, McDuff established a number-theoretic criterion for the existence of a symplectic embedding of one four-dimensional ellipsoid into another. This is related to previously known criteria for when a disjoint union of balls can be symplectically embedded into a ball. The new theory of "ECH capacities" gives general obstructions to symplectic embeddings in four dimensions which turn out to be sharp in the above cases., Comment: updated bibliography, corrected typos, to appear in PNAS

Define a "Liouville domain" to be a compact exact symplectic manifold with contact-type boundary. We use embedded contact homology to assign to each four-dimensional Liouville domain (or subset thereof) a sequence of real numbers, which we call "ECH capacities". The ECH capacities of a Liouville domain are defined in terms of the "ECH spectrum" of its boundary, which measures the amount of symplectic action needed to represent certain classes in embedded contact homology. Using cobordism maps on embedded contact homology (defined in joint work with Taubes), we show that the ECH capacities are monotone with respect to symplectic embeddings. We compute the ECH capacities of ellipsoids, polydisks, certain subsets of the cotangent bundle of T2, and disjoint unions of examples for which the ECH capacities are known. The resulting symplectic embedding obstructions are sharp in some interesting cases, for example for the problem of embedding an ellipsoid into a ball (as shown by work of McDuff-Schlenk) or embedding a disjoint union of balls into a ball. We also state and present evidence for a conjecture under which the asymptotics of the ECH capacities of a Liouville domain recover its symplectic volume., Comment: 39 pages, v3 has minor corrections

This paper and its sequel prove that every Legendrian knot in a closed three-manifold with a contact form has a Reeb chord. The present paper deduces this result from another theorem, asserting that an exact symplectic cobordism between contact 3-manifolds induces a map on (filtered) embedded contact homology satisfying certain axioms. The latter theorem will be proved in the sequel using Seiberg-Witten theory., Comment: minor corrections and clarifications, to appear in Mathematical Research Letters

We define a relative version of contact homology for contact manifolds with convex boundary, and prove basic properties of this relative contact homology. Similar considerations also hold for embedded contact homology.

Embedded contact homology (ECH) is a kind of Floer homology for contact three-manifolds. Taubes has shown that ECH is isomorphic to a version of Seiberg-Witten Floer homology (and both are conjecturally isomorphic to a version of Heegaard Floer homology). This isomorphism allows information to be transferred between topology and contact geometry in three dimensions. In this article we first give an overview of the definition of embedded contact homology. We then outline its applications to generalizations of the Weinstein conjecture, the Arnold chord conjecture, and obstructions to symplectic embeddings in four dimensions., Comment: expository article to accompany invited talk at 2010 ICM

This is an introduction to Taubes's proof of the Weinstein conjecture, written for the AMS Current Events Bulletin. It is intended to be accessible to nonspecialists, so much of the article is devoted to background and context., Comment: 53 pages, v2 has minor revisions, to appear in AMS Bulletin

We use the equivalence between embedded contact homology and Seiberg-Witten Floer homology to obtain the following improvements on the Weinstein conjecture. Let Y be a closed oriented connected 3-manifold with a stable Hamiltonian structure, and let R denote the associated Reeb vector field on Y. We prove that if Y is not a T^2-bundle over S^1, then R has a closed orbit. Along the way we prove that if Y is a closed oriented connected 3-manifold with a contact form such that all Reeb orbits are nondegenerate and elliptic, then Y is a lens space. Related arguments show that if Y is a closed oriented 3-manifold with a contact form such that all Reeb orbits are nondegenerate, and if Y is not a lens space, then there exist at least three distinct embedded Reeb orbits., Comment: 39 pages

Let Y be a closed oriented 3-manifold with a contact form such that all Reeb orbits are nondegenerate. The embedded contact homology (ECH) index associates an integer to each relative 2-dimensional homology class of surfaces whose boundary is the difference between two unions of Reeb orbits. This integer determines the relative grading on ECH; the ECH differential counts holomorphic curves in the symplectization of Y whose relative homology classes have ECH index 1. A known index inequality implies that such curves are (mostly) embedded and satisfy some additional constraints. In this paper we prove four new results about the ECH index. First, we refine the relative grading on ECH to an absolute grading, which associates to each union of Reeb orbits a homotopy class of oriented 2-plane fields on Y. Second, we extend the ECH index inequality to symplectic cobordisms between three-manifolds with Hamiltonian structures, and simplify the proof. Third, we establish general inequalities on the ECH index of unions and multiple covers of holomorphic curves in cobordisms. Finally, we define a new relative filtration on ECH, or any other kind of contact homology of a contact 3-manifold, which is similar to the ECH index and related to the Euler characteristic of holomorphic curves. This does not give new topological invariants except possibly in special situations, but it is a useful computational tool., Comment: 47 pages; added a reference and minor clarifications suggested by referee, to appear in Yashafest proceedings

This paper and its prequel ("Part I") prove a generalization of the usual gluing theorem for two index 1 pseudoholomorphic curves U_+ and U_- in the symplectization of a contact 3-manifold. We assume that for each embedded Reeb orbit gamma, the total multiplicity of the negative ends of U_+ at covers of gamma agrees with the total multiplicity of the positive ends of U_- at covers of gamma. However, unlike in the usual gluing story, here the individual multiplicities are allowed to differ. In this situation, one can often glue U_+ and U_- to an index 2 curve by inserting genus zero branched covers of R-invariant cylinders between them. This paper shows that the signed count of such gluings equals a signed count of zeroes of a certain section of an obstruction bundle over the moduli space of branched covers of the cylinder. Part I obtained a combinatorial formula for the latter count and, assuming the result of the present paper, deduced that the differential d in embedded contact homology satisfies d^2=0. The present paper completes all of the analysis that was needed in Part I. The gluing technique explained here is in principle applicable to more gluing problems. We also prove some lemmas concerning the generic behavior of pseudoholomorphic curves in symplectizations, which may be of independent interest., Comment: 123 pages; some corrections following referee's suggestions, to appear in Journal of Symplectic Geometry

This paper and its sequel prove a generalization of the usual gluing theorem for two index 1 pseudoholomorphic curves u_+ and u_- in the symplectization of a contact 3-manifold. We assume that for each embedded Reeb orbit gamma, the total multiplicity of the negative ends of u_+ at covers of gamma agrees with the total multiplicity of the positive ends of u_- at covers of gamma. However, unlike in the usual gluing story, here the individual multiplicities are allowed to differ. In this situation, one can often glue u_+ and u_- to an index 2 curve by inserting genus zero branched covers of R-invariant cylinders between them. We establish a combinatorial formula for the signed count of such gluings. As an application, we deduce that the differential d in embedded contact homology satisfies d^2=0. This paper explains the more algebraic aspects of the story, and proves the above formulas using some analytical results from part II., Comment: 100 pages; slightly revised with new pictures following referee's suggestions; to appear in Journal of Symplectic Geometry

The embedded contact homology (ECH) of a 3-manifold with a contact form is a variant of Eliashberg-Givental-Hofer's symplectic field theory, which counts certain embedded J-holomorphic curves in the symplectization. We show that the ECH of T^3 is computed by a combinatorial chain complex which is generated by labeled convex polygons in the plane with vertices at lattice points, and whose differential involves `rounding corners'. We compute the homology of this combinatorial chain complex. The answer agrees with the Ozsvath--Szabo Floer homology HF^+(T^3)., Comment: This is the version published by Geometry & Topology on 26 March 2006

The periodic Floer homology of a surface symplectomorphism, defined by the first author and M. Thaddeus, is the homology of a chain complex which is generated by certain unions of periodic orbits, and whose differential counts certain embedded pseudoholomorphic curves in R cross the mapping torus. It is conjectured to recover the Seiberg-Witten Floer homology of the mapping torus for most spin-c structures, and is related to a variant of contact homology. In this paper we compute the periodic Floer homology of some Dehn twists., Comment: Published by Algebraic and Geometric Topology at http://www.maths.warwick.ac.uk/agt/AGTVol5/agt-5-14.abs.html

In principle, Floer theory can be extended to define homotopy invariants of families of equivalent objects (e.g. Hamiltonian isotopic symplectomorphisms, 3-manifolds, Legendrian knots, etc.) parametrized by a smooth manifold B. The invariant of a family consists of a filtered chain homotopy type, which gives rise to a spectral sequence whose E^2 term is the homology of B with twisted coefficients in the Floer homology of the fibers. The filtered chain homotopy type also gives rise to a "family Floer homology" to which the spectral sequence converges. For any particular version of Floer theory, some analysis needs to be carried out in order to turn this principle into a theorem. This paper constructs the invariant in detail for the model case of finite dimensional Morse homology, and shows that it recovers the Leray-Serre spectral sequence of a smooth fiber bundle. We also generalize from Morse homology to Novikov homology, which involves some additional subtleties., Comment: substantially revised and expanded, with new material on filtered chain homotopy type and the generalization to Novikov homology

Let $\Sigma$ be a surface with a symplectic form, let $\phi$ be a symplectomorphism of $\Sigma$, and let $Y$ be the mapping torus of $\phi$. We show that the dimensions of moduli spaces of embedded pseudoholomorphic curves in $\R\times Y$, with cylindrical ends asymptotic to periodic orbits of $\phi$ or multiple covers thereof, are bounded from above by an additive relative index. We deduce some compactness results for these moduli spaces. This paper establishes some of the foundations for a program with Michael Thaddeus, to understand the Seiberg-Witten Floer homology of $Y$ in terms of such pseudoholomorphic curves. Analogues of our results should also hold in three dimensional contact homology., Comment: 60 pages, LaTeX 2e

In two previous papers with Yi-Jen Lee, we defined and computed a notion of Reidemeister torsion for the Morse theory of closed 1-forms on a finite dimensional manifold. The present paper gives an a priori proof that this Morse theory invariant is a topological invariant. It is hoped that this will provide a model for possible generalizations to Floer theory., Comment: 42 pages, LateX2e; some corrections, improved exposition