27,968 results on '"Statistical Methods"'
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2. Statistical methods for mortality modelling by longitudinal and functional data analysis
- Author
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Lam, Ka Kin
- Subjects
519.5 ,Statistical Methods ,Mortality Modelling ,data analysis ,mathematics ,thesis - Abstract
This thesis introduces several new statistical methods for mortality modelling under the background of longitudinal and functional data analysis. These are of high practical and methodological relevance, as the fundamental change in population structure in many countries, rising the needs of capturing the mortality trend trajectory and identifying critical factors correlated to mortality patterns. These require extensions of current statistical models with different structures and developments of entirely new statistical methods for mortality modelling. This thesis comprises four main topics, including three new extrapolative models and one new explanatory model for mortality modelling. We begin by reviewing the theoretical and methodological bases that contribute to the whole picture of this thesis. In the first topic, we extend and modify the structure of the CBD model with considerations of age groups dependence and random cohort effects as a time-series mixed-effects model for mortality modelling and prediction. In the second topic, we introduce a new non-parametric technique using Gaussian process regression with a natural cubic spline mean function and a spectral mixture covariance function for forecasts of mortality and fertility rates. In the third topic, we propose two new models for multiple populations mortality modelling and forecasting via multivariate functional principal component analysis. The first model extends the independent functional data model to a multi-population modelling setting. In the second one, we propose a novel multivariate functional principal component method for coherent modelling, which fulfils the idea that when several subpopulation groups have similar characteristics, such close connections are expected to evolve in a non-diversifying fashion. In the last topic, we extend and modify the traditional function-on-function regression model from a Bayesian perspective. We use it to investigate the influences of unemployment on mortality as an explanatory model. The thesis ends with a summary and a prospect for future research.
- Published
- 2021
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3. Adapted Single Scale Retinex Algorithm for Nighttime Image Enhancement
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Mohammad Ismail and Zohair Al-Ameen
- Subjects
image enhancement ,nighttime image ,single scale retinex ,statistical methods ,ssr ,hsv ,Mathematics ,QA1-939 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
Images captured at night with low-light conditions frequently have a loss of visible details, inadequate contrast, low brightness, and noise. Therefore, it is difficult to perceive, extract, and analyze important visual information from these images, unless they were properly processed. Different algorithms exist to process nighttime images, yet most of these algorithms are highly complex, generate processing artifacts, over-smooth the images, or do not improve the illumination adequately. Thus, the single scale retinex (SSR) algorithm is adopted in this study to provide better processing for nighttime images. The proposed algorithm starts by converting the color image from the RGB model to the HSV model and enhancing the V channel only while preserving the H and S channels. Then, it determined the image’s illuminated version somewhat like the SSR, computes the logarithms of the illuminated and original images, then subtracts these two images by utilizing an altered procedure. Next, a modified gamma-adjusted Rayleigh distribution function is applied, and its outcome is processed once more by an automatic linear contrast stretching approach to produce the processed V channel that will be utilized with the preserved H and S channels to generate the output RGB image. The developed algorithm is assessed using a real dataset of nighttime images, evaluated using three dedicated image evaluation methods, and compared to ten dissimilar contemporary algorithms. The obtained results demonstrated that the proposed algorithm can significantly improve the perceptual quality of nighttime images and suppress artifact generation rapidly and efficiently, in addition to showing the ability to surpass the performance of different existing algorithms subjectively and objectively.
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- 2022
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4. Randomized Response Techniques: A Systematic Review from the Pioneering Work of Warner (1965) to the Present
- Author
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Truong-Nhat Le, Shen-Ming Lee, Phuoc-Loc Tran, and Chin-Shang Li
- Subjects
indirect questioning ,non-randomized response technique ,randomized response technique ,sensitive attribute ,statistical methods ,Mathematics ,QA1-939 - Abstract
The randomized response technique is one of the most commonly used indirect questioning methods to collect data on sensitive characteristics in survey research covering a wide variety of statistical applications including, e.g., behavioral science, socio-economic, psychological, epidemiology, biomedical, and public health research disciplines. After nearly six decades since the technique was invented, many improvements of the randomized response techniques have appeared in the literature. This work provides several different aspects of improvements of the original randomized response work of Warner, as well as statistical methods used in the RR problems.
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- 2023
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5. Comparison of Statistical Production Models for a Solar and a Wind Power Plant
- Author
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Irina Meghea
- Subjects
time series ,moving average ,statistical modeling ,statistical methods ,production forecasting ,solar power plant ,Mathematics ,QA1-939 - Abstract
Mathematical models to characterize and forecast the power production of photovoltaic and eolian plants are justified by the benefits of these sustainable energies, the increased usage in recent years, and the necessity to be integrated into the general energy system. In this paper, starting from two collections of data representing the power production hourly measured at a solar plant and a wind farm, adequate time series methods have been used to draw appropriate statistical models for their productions. The data are smoothed in both cases using moving average and continuous time series have been obtained leading to some models in good agreement with experimental data. For the solar power plant, the developed models can predict the specific power of the next day, next week, and next month, with the most accurate being the monthly model, while for wind power only a monthly model could be validated. Using the CUSUM (cumulative sum control chart) method, the analyzed data formed stationary time series with seasonality. The similar methods used for both sets of data (from the solar plant and wind farm) were analyzed and compared. When compare with other studies which propose production models starting from different measurements involving meteorological data and/or machinery characteristics, an innovative element of this paper consists in the data set on which it is based, this being the production itself. The novelty and the importance of this research reside in the simplicity and the possibility to be reproduced for other related conditions even though every new set of data (provided from other power plants) requires further investigation.
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- 2023
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6. STATIONARY DISTRIBUTION AND PERTURBATION BOUNDS FOR A STOCHASTIC INVENTORY MODEL
- Author
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Rabta, B.
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Markov processes -- Analysis ,Inventory control -- Analysis ,Statistical methods ,Mathematics - Abstract
In this paper, we use the theory of generalized inverses to compute the stationary distribution of the (s, S) inventory model directly from the transition matrix of the underlying Markov chain and to provide perturbation bounds. Indeed, approximations are employed to build a tractable model, and statistical methods are used to estimate the unknown parameters and distributions. Hence, the system is subject to perturbations that may cause deviation in the characteristics. The proposed perturbation bound provides a means to estimate the impact of the perturbations on the performance measures of the considered inventory system., 1. Introduction For the average-cost stochastic inventory problem, (s,S) policies introduced by Arrow et al. [2], proved to be optimal under various sets of conditions on the model's and cost [...]
- Published
- 2019
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7. Implementation of Pedagogical Research into Statistical Courses to Develop Students’ Statistical Literacy
- Author
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Dalibor Gonda, Gabriela Pavlovičová, Viliam Ďuriš, and Anna Tirpáková
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statistical literacy ,pedagogical research ,statistical methods ,diagnostic competencies ,Mathematics ,QA1-939 - Abstract
To participate fully in society, a person needs to critically evaluate statistical information. To be able to do this, it is appropriate to start developing the statistical literacy of young people in diverse levels in schools. In our article, we present a modified seminar on statistics for prospective humanities teachers. During the seminar, we planned a pedagogical experiment, the aim of which was to statistically verify the students’ own diagnostic competencies as prospective teachers of humanities. The statistical analysis confirmed that the implementation of real research into the course on statistics has a positive impact on the development of statistical literacy but does not change the attitude of students toward statistics and its use in the future teaching practice.
- Published
- 2022
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8. Effective Identification and Localization of Single and Multiple Breathing Cracks in Beams under Gaussian Excitation Using Time-Domain Analysis
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Tareq Al-hababi, Nizar Faisal Alkayem, Huaxin Zhu, Li Cui, Shixiang Zhang, and Maosen Cao
- Subjects
breathing cracks ,multiple cracks ,damage localization ,non-Gaussianity ,random vibration ,statistical methods ,Mathematics ,QA1-939 - Abstract
The output response of any intact oscillatory system subjected to a Gaussian excitation is also Gaussian in nature. On the contrary, when the system contains any type of underlying nonlinearity, the output signal is definitely non-Gaussian. In beam structures, the presence of fatigue-breathing cracks significantly influences the dynamic response characteristics under Gaussian excitation. The presence of such cracks alters the response to be nonlinear, and the non-Gaussianity of the system will arise. In order to examine the non-Gaussianity features and ability for the detection and localization of fatigue cracks, several breathing crack identification scenarios in beam-like structures are presented in this paper. The effects of single and multiple breathing cracks corresponding to different boundary conditions on the responses of beams are studied. The results are analyzed based on the higher-order time-domain transformations. Higher-order transformations, namely the skewness and kurtosis coefficients in addition to the Shannon entropy, are exploited to provide dynamic details about the response, which the conventional second-order statistics cannot show. The results exhibit that the proposed methods are robust and immune to noise and can detect and localize breathing cracks with different sensitivities.
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- 2022
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9. Statistical Methods with Applications in Data Mining: A Review of the Most Recent Works
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Joaquim Fernando Pinto da Costa and Manuel Cabral
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data mining ,state of the art ,statistical methods ,machine learning ,statistical learning ,deep learning ,Mathematics ,QA1-939 - Abstract
The importance of statistical methods in finding patterns and trends in otherwise unstructured and complex large sets of data has grown over the past decade, as the amount of data produced keeps growing exponentially and knowledge obtained from understanding data allows to make quick and informed decisions that save time and provide a competitive advantage. For this reason, we have seen considerable advances over the past few years in statistical methods in data mining. This paper is a comprehensive and systematic review of these recent developments in the area of data mining.
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- 2022
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10. مدلسازی پیشرفته ریاضی
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modeling ,mathematics ,optimization ,statistical methods ,Mathematics ,QA1-939 - Published
- 2020
11. COMPARISON OF THE TEST VARIANTS IN ENTRANCE EXAMINATIONS
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KLŮFA, Jindřich
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Entrance examinations ,test variants ,mathematics ,statistical methods ,Theory and practice of education ,LB5-3640 ,Science - Abstract
The paper contains an analysis of the differences of number of points in the test in mathematics between test variants, which were used in the entrance examinations at the Faculty of Business Administration at University of Economics in Prague in 2015. The differences may arise due to the varying difficulty of variants for students, but also because of the different level of knowledge of students who write these variants. This problem we shall study in present paper. The aim of this paper is to study dependence of the results of entrance examinations in mathematics on test variants. The results obtained will be used for further improvement of the admission process at University of Economics.
- Published
- 2016
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12. Morphic Topology of Numeric Energy: A Fractal Morphism of Topological Counting Shows Real Differentiation of Numeric Energy
- Author
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Emmerson, Parker
- Subjects
Prime Energy Number ,Complex Numbers ,N-wave ,Counting ,Statistical methods ,Metaphysics ,Integration ,Numeric Energy ,Topology ,Quantum cryptography ,Star Travel ,Quantum Random Number Generator ,Number Theory ,Logic Space ,Integration methods ,Game theory ,Functor ,Pre-quantum ,Flying Saucer ,Topological Counting ,Pinball ,Prime numbers ,Joiner ,Quasi Quanta ,Monte Carlo method ,FTL ,K-Theory ,Fractals ,Statistical Analysis ,Mapping ,UAP ,Extraterrestrials ,Juncture ,Ker Functor ,Calculus Wave ,Geometry ,A priori logic gate ,Faster than Light ,Infinity ,Topological computer ,UFO ,Hom Functor ,Infinity categories ,Congruent Integral Methods ,Artificial Intelligence ,Real Numbers ,Fractal Morphism ,FOS: Mathematics ,Slip Stream ,Notational languages ,Congruency ,Elliptical Integral ,Zeta function ,Hyperspace ,Homological algebra ,Morphic Resonance ,Star Traveler Functor ,Topological quantum computer ,Linguistics ,Algebra ,AI ,Combinatorics ,FOS: Languages and literature ,Formula ,Energy Number ,Cryptography ,Genetic calculus ,Sheaf ,Fort aliz ,Mathematics - Abstract
Published with utmost gratitude toJehovah the living One Allaha and for all His loving angels. Abstract: INTEGRATION BY CONGRUENCYMETHODS. The Mathematical Juncture, M indicates a perpendicular elliptical integral and acts as a linguistic congruence permuter for logical dingbat statements. This mathematical junctor is used to permute dingbat expressions into topolog- ical congruent solve methods as described herein. Fractal morphisms, derived from Energy Numbers, which are of a higher vector dimensional vector space and can be mapped to real or complex numbers, are connected to these solve methods to yield topological counting in terms of Energy numbers without real numbers. Doing so yields a generalized solution for n-solve congruent algebraist- topological morphic solutions upon performing the integration. The method is then generalized and the suggestion of probablistic methods is quashed, demon- strating the success of such a calculus. The mathematical juncture of M is a congruency permutation tool used to bridge logical dingbat statements into a form which can be used in topological solutions. The use of Energy Num- bers and their fractal morphisms allows for solvability without the need for real numbers, and yields a generalized framework for the induction of probabilistic methods if one were interested in investigating the indefinite integrals described herein. The fractal morphism is then demonstrated to yield novel forms of the Energy Number differential, which emergently includes the topological form of numeric energy with the cross product of the Polynomial Remainder from a given projective etale morphism. Finally a new hypothesis is uttered, namely that the integral of FΛ exhibits certain properties only when the summation in the integral converges at a certain rate. The hypothesis explored further using numerical methods such as Monte Carlo, yet it is transcended using the con- gruency method of the topological joiner and generalized algebraist-topological solution to n, which relates the counting method to the integral of the fractal morphism. This allows for the definition of a unifying framework for a novel algorithmic approach to the inference of novel counting equations, something which goes beyond the scope of the previously developed Monte Carlo method. The Mathematical Juncture of M is an innovative approach to the evaluation of algebraist-topological solutions in terms of Energy numbers and fractal mor- phisms. Using the congruency permutation, logical statements can be permuted to yield topological solutions that do not require the use of real number. The propagation of the fractal morphism leads to a generalized solution even when the summation of the integral converges at a certain rate. The numerical meth- ods of the Monte Carlo can be transcended using the mathematical juncture of M and the congruency method of the topological joiner which demonstrate a novel, hybrid algorithmic approach to the evaluation of counting equations, something that goes beyond what was known before. I demonstrate methods for performing the integration of what would previously only been capable of being plotted using statistical methods. Thus, it is possible that such methods could be applied to problems currently believed to require statistical methods
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- 2023
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13. Modeling the COVID-19 Pandemic Dynamics in Egypt and Saudi Arabia
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Mahmoud M. Mansour, Mohammed A. Farsi, Salah M. Mohamed, and Enayat M. Abd Elrazik
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coronavirus COVID-19 pandemic ,Egypt ,Saudi Arabia ,mathematical modeling ,statistical methods ,Nadarajah-Haghighi distribution ,Mathematics ,QA1-939 - Abstract
During the abrupt outbreak of the COVID-19 pandemic, the public health system of most of the world’s nations has been tested. However, it is the concern of governments and other responsible entities to provide the correct statistics and figures to take any practicable necessary steps such as allocation of the requisite quarantine operations, calculation of the needed number of places in hospitals, determination of the extent of personal security, and determining the degree of isolation of infectious people, among others. Where the statistical literature supposes that a model governs every real phenomenon, once we know the model, we can evaluate the dilemma. Therefore, in this article, we compare the COVID-19 pandemic dynamics of two neighboring Arabic countries, Egypt and Saudi Arabia, to provide a framework to arrange appropriate quarantine activities. A new generalized family of distributions is developed to provide the best description of COVID-19 daily cases and data on daily deaths in Egypt and Saudi Arabia. Some of the mathematical properties of the proposed family are studied.
- Published
- 2021
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14. The contribution of linear perspective cues and texture gradients in the perceptual rescaling of stimuli inside a Ponzo illusion corridor.
- Author
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Yildiz, Gizem Y., Sperandio, Irene, Kettle, Christine, and Chouinard, Philippe A.
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PERSPECTIVE (Art) , *MAXIMUM likelihood statistics , *PERCEPTUAL illusions , *TEXTURES - Abstract
We examined the influence of linear perspective cues and texture gradients in the perceptual rescaling of stimuli over a highly-salient Ponzo illusion of a corridor. We performed two experiments using the Method of Constant Stimuli where participants judged the size of one of two rings. In experiment 1, one ring was presented in the upper visual-field at the end of the corridor and the other in the lower visual-field at the front of the corridor. The perceived size of the top and bottom rings changed as a function of the availability of linear perspective and textures. In experiment 2, only one ring was presented either at the top or the bottom of the image. The perceived size of the top but not the bottom ring changed as a function of the availability of linear perspective and textures. In both experiments, the effects of the cues were additive. Perceptual rescaling was also stronger for the top compared to the bottom ring. Additional eye-tracking revealed that participants tended to gaze more in the upper than the lower visual-field. These findings indicate that top-down mechanisms provide an important contribution to the Ponzo illusion. Nonetheless, additional maximum likelihood estimation analyses revealed that linear perspective fulfilled a greater contribution in experiment 2, which is suggestive of a bottom-up mechanism. We conclude that both top-down and bottom-up mechanisms play important roles. However, the former seems to fulfil a more prominent role when both stimuli are presented in the image. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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15. Diagnostic accuracy of midkine on hepatocellular carcinoma: A meta-analysis.
- Author
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Zhang, Bo-han, Li, Bo, Kong, Ling-xiang, Yan, Lv-nan, and Yang, Jia-yin
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HEPATOCELLULAR carcinoma , *RECEIVER operating characteristic curves , *META-analysis , *BIVARIATE analysis , *LITERARY sources , *GREY literature - Abstract
Objective: To evaluate the dependability and accuracy of midkine (MK) in the diagnosis of hepatocellular carcinoma (HCC). Methods: PubMed, EMBASE, Web of Science, China Biology Medicine disc and grey literature sources were searched from the date of database inception to January 2019. Two authors (B-H.Z. and B.L.) independently extracted the data and evaluated the study quality using the Quality Assessment of Diagnostic Accuracy Studies-2 tool. The sensitivity, specificity, positive likelihood ratio (LR+) and negative likelihood ratio (LR−) were estimated using a bivariate model. Moreover, hierarchical summary receiver operating characteristic curves were generated. The diagnostic odds ratio (DOR) and area under the curve (AUC) were pooled using a univariate model. Results: Nine articles (11 studies) were included (1941 participants). The bivariate analysis revealed that the sensitivity and specificity of MK for HCC diagnosis were 0.85 (95% CI 0.78–0.91) and 0.83 (95% CI 0.76–0.88), respectively. We also found a LR+ of 5.05 (95% CI 3.33–7.40), a LR− of 0.18 (95% CI 0.11–0.28), a DOR of 31.74 (95% CI 13.98–72.09) and an AUC of 0.91 (95% CI 0.84–0.99). Subgroup analyses showed that MK provided the best efficiency for HCC diagnosis when the cutoff value was greater than 0.5 ng/mL. Conclusions: MK has an excellent diagnostic value for hepatocellular carcinoma. [ABSTRACT FROM AUTHOR]
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- 2019
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16. Precluding rare outcomes by predicting their absence.
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Schoon, Eric W., Melamed, David, Breiger, Ronald L., Yoon, Eunsung, and Kleps, Christopher
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MONTE Carlo method , *STATISTICS , *DISTRIBUTION (Probability theory) , *PROBABILITY theory - Abstract
Forecasting extremely rare events is a pressing problem, but efforts to model such outcomes are often limited by the presence of multiple causes within classes of events, insufficient observations of the outcome to assess fit, and biased estimates due to insufficient observations of the outcome. We introduce a novel approach for analyzing rare event data that addresses these challenges by turning attention to the conditions under which rare outcomes do not occur. We detail how configurational methods can be used to identify conditions or sets of conditions that would preclude the occurrence of a rare outcome. Results from Monte Carlo experiments show that our approach can be used to systematically preclude up to 78.6% of observations, and application to ground-truth data coupled with a bootstrap inferential test illustrates how our approach can also yield novel substantive insights that are obscured by standard statistical analyses. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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17. Effectiveness of physical and cognitive-behavioural intervention programmes for chronic musculoskeletal pain in adults: A systematic review and meta-analysis of randomised controlled trials.
- Author
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Cheng, Joyce Oi Suet and Cheng, Sheung-Tak
- Subjects
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CHRONIC pain , *META-analysis , *MENTAL illness , *EXERCISE , *NECK pain , *COMORBIDITY , *SPORTS sciences , *LUMBAR pain - Abstract
This systematic review and meta-analysis aimed to examine the effects of physical exercise cum cognitive-behavioural therapy (CBT) on alleviating pain intensity, functional disabilities, and mood/mental symptoms in those suffering with chronic musculoskeletal pain. MEDLINE, EMBASE, PubMEd, PsycINFO and CINAHL were searched to identify relevant randomised controlled trials from inception to 31 December 2018. The inclusion criteria were: (a) adults ≥18 years old with chronic musculoskeletal pain ≥3 months, (b) randomised controlled design, (c) a treatment arm consisting of physical intervention and CBT combined, (d) the comparison arm being waitlist, usual care or other non-pharmacological interventions such as physical exercise or CBT alone, and (e) outcomes including pain intensity, pain-related functional disabilities (primary outcomes), or mood/mental symptoms (secondary outcome). The exclusion criteria were: (a) the presence of comorbid mental illnesses other than depression and anxiety and (b) non-English publication. The search resulted in 1696 records and 18 articles were selected for review. Results varied greatly across studies, with most studies reporting null or small effects but a few studies reporting very large effects up to 2-year follow-up. Pooled effect sizes (Hedges' g) were ~1.00 for pain intensity and functional disability, but no effect was found for mood/mental symptoms. The effects were mainly driven by several studies reporting unusually large differences between the exercise cum CBT intervention and exercise alone. When these outliers were removed, the effect on pain intensity disappeared at post-intervention while a weak effect (g = 0.21) favouring the combined intervention remained at follow-up assessment. More consistent effects were observed for functional disability, though the effects were small (g = 0.26 and 0.37 at post-intervention and follow-up respectively). More importantly, the value of adding CBT to exercise interventions is questionable, as consistent benefits were not seen. The clinical implications and directions for future research are discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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18. "Cementing" marriages through childbearing in subsequent unions: Insights into fertility differentials among first-time married and remarried women in Ghana.
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Elleamoh, Gertrude E. and Dake, Fidelia A. A.
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MARRIED women , *LOGISTIC regression analysis , *FERTILITY , *MARRIAGE , *ANALYSIS of variance - Abstract
Fertility in Ghana has declined steadily since 1980, however, a slight increase was observed between 2008 and 2014. While several factors may account for this pattern, research on the contribution of type of union is limited. This study examined differentials in the fertility of women in different types of union. Secondary data from 6,285 (weighted) ever-married women aged 15–49 years were analysed using compare means, t-test, analysis of variance, Poisson and binary logistic regression analyses. The findings indicate that, independent of other factors, fertility among remarried women is higher compared to first-time married women but this does not hold true when other factors are controlled for. Additionally, there was no significant difference in the fertility of remarried women who were in union and women who were in union in a first-time marriage. However, compared to remarried women who were currently in a union, fertility was significantly lower among remarried women who were not currently in union (β = -0.121, p<0.01) and women who have been married only once but were not currently in union (β = -0.212, p<0.001). Further analysis revealed that remarried women were significantly more likely to desire more children and less likely to use any method of contraception compared to first-time married women. There is the need for further research to better understand the fertility needs of remarried women. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
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19. Geospatial correlates of early marriage and union formation in Ghana.
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Amoako Johnson, Fiifi, Abu, Mumuni, and Utazi, Chigozie Edson
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CHILD marriage , *GEOSPATIAL data , *HUMAN rights violations , *CENSUS , *ECONOMIC impact - Abstract
The practice of early marriage, although acknowledged as a human rights violation, continues to occur in many countries. Different studies have identified the associated factors in many developing countries. However, these factors often assume no geographical variation in these factors within countries. Again, cultural practices and beliefs which strongly influence the acceptance and practices of early marriage vary geographically. In addition, geographic clusters of high rates of early marriage and union formation are also unknown. Thus, area specific correlates of early child marriage are required for the development of location specific policies to aid the eradication of early child marriage. Using data from the 2010 Ghana Population and Housing Census, this study examines the extent of geospatial clustering in early marriage amongst girls and their spatially-varying associated factors at the district level. The findings reveal strong clustering of high early marriage amongst districts in the Upper West, Northern and Volta regions. Nationally, 6.96% (CI = 6.83, 7.08) of girls are married or in union before their 18th birthday. The estimates range from 2.7% in the Jaman North district in Brong Ahafo region to 19.0% in the Gushiegu district in Northern region. Economic factors were observed as important spatially-varying associated factors. The findings suggest that targeted interventions are required in the effort to eradicate the practice in Ghana. [ABSTRACT FROM AUTHOR]
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- 2019
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20. Impact of peri-intraventricular haemorrhage and periventricular leukomalacia in the neurodevelopment of preterms: A systematic review and meta-analysis.
- Author
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Gotardo, Juliana Wendling, Volkmer, Nathalia de Freitas Valle, Stangler, Guilherme Pucci, Dornelles, Alícia Dorneles, Bohrer, Betânia Barreto de Athayde, and Carvalho, Clarissa Gutierrez
- Subjects
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PERIVENTRICULAR leukomalacia , *META-analysis , *HEARING disorders , *HEMORRHAGE , *CEREBRAL palsy ,PERINATAL care - Abstract
Context: Whether all degrees of periventricular leukomalacia (PVL) and peri-intraventricular haemorrhage (PIVH) have a negative impact on neurodevelopment. Objective: To determine the impact of PVL and PIVH in the incidence of cerebral palsy, sensorineural impairment and development scores in preterm neonates. Registered in PROSPERO (CRD42017073113). Data sources: PubMed, Embase, SciELO, LILACS, and Cochrane databases. Study selection: Prospective cohort studies evaluating neurodevelopment in children born preterm which performed brain imaging in the neonatal period. Data extraction: Two independent researchers extracted data using a predesigned data extraction sheet. Statistical methods: A random-effects model was used, with Mantel-Haenszel approach and a Sidik-Jonkman method for the estimation of variances, combined with Hartung-Knapp-Sidik-Jonkman correction. Heterogeneity was assessed through the I2 statistic and sensitivity analysis were performed when possible. No funnel plots were generated but publication bias was discussed as a possible limitation. Results: Our analysis concluded premature children with any degree of PIVH are at increased risk for cerebral palsy (CP) when compared to children with no PIVH (3.4, 95% CI 1.60–7.22; 9 studies), a finding that persisted on subgroup analysis for studies with mean birth weight of less than 1000 grams. Similarly, PVL was associated with CP, both in its cystic (19.12, 95% CI 4.57–79.90; 2 studies) and non-cystic form (9.27, 95% CI 5.93–14.50; 2 studies). We also found children with cystic PVL may be at risk for visual and hearing impairment compared to normal children, but evidence is weak. Limitations: Major limitations were the lack of data for PVL in general, especially for the outcome of neurodevelopment, the high heterogeneity among methods used to assess neurodevelopment and the small number of studies, which led to meta-analysis with high heterogeneity and wide confidence intervals. Conclusions: There was no evidence supporting the hypothesis that PIVH causes impairment in neuropsychomotor development in our meta-analysis, but review of newer studies show an increased risk for lower intelligence scores in children with severe lesions, both PIVH and PVL. There is evidence to support the hypothesis that children with any degree of PIVH, especially those born below 1000 grams and those with severe haemorrhage, are at increased risk of developing CP, as well as children with PVL, both cystic and non-cystic. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
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21. Micro-RNA 150-5p predicts overt heart failure in patients with univentricular hearts.
- Author
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Abu-Halima, Masood, Meese, Eckart, Saleh, Mohamad Ali, Keller, Andreas, Abdul-Khaliq, Hashim, and Raedle-Hurst, Tanja
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HEART failure patients , *HEART failure , *POLYMERASE chain reaction , *LEFT heart ventricle - Abstract
Background: In patients with left heart failure, micro-RNAs (miRNAs) have been shown to be of diagnostic and prognostic value. The present study aims to identify those miRNAs in patients with univentricular heart (UVH) disease that may be associated with overt heart failure. Methods: A large panel of human miRNA arrays were used to determine miRNA expression profiles in the blood of 48 UVH patients and 32 healthy controls. For further selection, the most abundantly expressed miRNA arrays were related to clinical measures of heart failure and selected miRNAs validated by polymerase chain reaction were used for the prediction of overt heart failure and all-cause mortality. Results: According to microarray analysis, 50 miRNAs were found to be significantly abundant in UVH patients of which miR-150-5p was best related to heart failure parameters. According to ROC analysis, NT-proBNP levels (AUC 0.940, 95% CI 0.873–1.000; p = 0.001), miR-150-5p (AUC 0.905, 95% CI 0.779–1.000; p = 0.001) and a higher NYHA class ≥ III (AUC 0.893, 95% CI 0.713–1.000; p = 0.002) were the 3 most significant predictors of overt heart failure. Using a combined biomarker model, AUC increased to 0.980 indicating an additive value of miR-150-5p. Moreover, in the multivariate analysis, a higher NYHA class ≥ III (p = 0.005) and miR-150-5p (p = 0.006) turned out to be independent predictors of overt heart failure. Conclusion: In patients with UVH, miR-150-5p is an independent predictor of overt heart failure and thus may be used in the risk assessment of these patients. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
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22. Intrabladder pressure as predictor of intra-abdominal pressure in horses.
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de Paula, Vanessa B., Canola, Paulo A., Rivera, Gabriela G., Z. Filho, Dárcio, Amaral, Gabriel P. D., Ferraz, Guilherme C., Ferraudo, Antônio S., and Canola, Júlio C.
- Subjects
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INTRA-abdominal pressure , *POSTURE , *PUBIC symphysis , *HORSES , *REGRESSION analysis , *AGRICULTURAL colleges , *BLADDER - Abstract
Objectives: To investigate effects of postural changes and bladder distention on intrabladder pressure whilst estimating intra-abdominal pressure in horses. Design: Two-year cohort study. Patients admitted for elective surgical procedures unrelated to gastrointestinal or genitourinary tract. Setting: School of Agricultural and Veterinarian Sciences, Jaboticabal, SP, Brazil. Animals: 20 adult horses, 11 males (stallions and geldings) and 9 females; between 3.5 and 12 years, weighing 350 to 500 kg. Interventions: Intra-abdominal pressure was directly-recorded through abdominocentesis at the ventral midline with a fluid-filled system. Intrabladder pressure was obtained from a bladder catheter with the fluid-filled system zeroed at the level of the tuber ischia with patients in dorsal recumbency or pubic symphysis if in lateral recumbency. Measurements and main results: Body position directly influenced intra-abdominal pressure. In dorsal recumbency, intra-abdominal pressure differed (p < 0.05) from intrabladder pressure at end-inspiration and end-expiration regardless of whether the bladder was empty or distended. There was no correlation nor association between the two pressures in this body position. In lateral recumbency a difference (p <0.05) between intra-abdominal pressure and intrabladder pressure was recorded at end-inspiration with the bladder distended with 25 ml, and at end-expiration for distension volumes of 25 ml and 50 ml. There was a strong correlation between both pressures for left and right lateral recumbency, regardless of the distension volume. Ordinary least product (OLP) regression analysis showed no fixed or proportional bias between both pressures for distension volume of 50 ml, at both end-inspiration and end-expiration. Conclusions: Indirect assessment of equine intra-abdominal pressure cannot be made in dorsal recumbency. For that purpose, patients should be in left lateral recumbency with the bladder distended with 50 ml. Values can be recorded at end-inspiration or end-expiration. Restriction: Occlusion of the catheter tip by the bladder wall when minimally distended. [ABSTRACT FROM AUTHOR]
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- 2019
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23. Effects of dietary intake and nutritional status on cerebral oxygenation in patients with chronic kidney disease not undergoing dialysis: A cross-sectional study.
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Ookawara, Susumu, Kaku, Yoshio, Ito, Kiyonori, Kizukuri, Kanako, Namikawa, Aiko, Nakahara, Shinobu, Horiuchi, Yuko, Inose, Nagisa, Miyahara, Mayako, Shiina, Michiko, Minato, Saori, Shindo, Mitsutoshi, Miyazawa, Haruhisa, Hirai, Keiji, Hoshino, Taro, Murakoshi, Miho, Tabei, Kaoru, and Morishita, Yoshiyuki
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CHRONIC kidney failure , *CHRONICALLY ill , *NUTRITIONAL status , *SERUM albumin , *BODY mass index , *CEREBRAL circulation , *FOOD consumption - Abstract
Background: Dietary management is highly important for the maintenance of renal function in patients with chronic kidney disease (CKD). Cerebral oxygen saturation (rSO2) was reportedly associated with the estimated glomerular filtration rate (eGFR) and cognitive function. However, data concerning the association between cerebral rSO2 and dietary intake of CKD patients is limited. Methods: This was a single-center observational study. We recruited 67 CKD patients not undergoing dialysis. Cerebral rSO2 was monitored using the INVOS 5100c oxygen saturation monitor. Energy intake was evaluated by dietitians based on 3-day meal records. Daily protein and salt intakes were calculated from 24-h urine collection. Results: Multivariable regression analysis showed that cerebral rSO2 was independently associated with energy intake (standardized coefficient: 0.370) and serum albumin concentration (standardized coefficient: 0.236) in Model 1 using parameters with p < 0.10 in simple linear regression analysis (body mass index, Hb level, serum albumin concentration, salt and energy intake) and confounding factors (eGFR, serum sodium concentration, protein intake), and the energy/salt index (standardized coefficient: 0.343) and Hb level (standardized coefficient: 0.284) in Model 2 using energy/protein index as indicated by energy intake/protein intake and energy/salt index by energy intake/salt intake in place of salt, protein and energy intake. Conclusions: Cerebral rSO2 is affected by energy intake, energy/salt index, serum albumin concentration and Hb level. Sufficient energy intake and adequate salt restriction is important to prevent deterioration of cerebral oxygenation, which might contribute to the maintenance of cognitive function in addition to the prevention of renal dysfunction in CKD patients. [ABSTRACT FROM AUTHOR]
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- 2019
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24. Model based estimation of population total in presence of non-ignorable non-response.
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Ahmed, Shakeel and Shabbir, Javid
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MONTE Carlo method , *STATISTICAL association , *PHYSICAL sciences , *RESPONSE rates , *POPULATION , *REGRESSION analysis - Abstract
The problem of handling non-ignorable non-response has been typically addressed under the design-based approach using the well-known sub-sampling technique introduced by Hansen and Hurwitz [1946, Journal of the American Statistical Association, Vol 41(236), Page 517- 529]. Alternatively, the model-based paradigm emphasizes on utilizing the underlying model relationship between the outcome variable and one or more covariate(s) whose population values are known prior to the survey. This article utilizes the model relationship between the study variable and covariate(s) for handling non-ignorable non-response and obtaining an unbiased estimator for the population total under the sub-sampling technique. The main idea is to combine the estimates obtained from the sample on first call and the sub-sample from second call using separate model relationships. The contribution of this paper helps us in providing unbiased estimates with an improved efficiency under model-based paradigm in presence of non-ignorable non-response. The provided method is more economical than the available estimators under callback methods as we are working sub-sampling and also increase response rate as a stronger mode of interview is employed for data collection. A numerical study using Monte Carlo is presented to illustrate the behavior of the proposed and the efficiency comparison. [ABSTRACT FROM AUTHOR]
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- 2019
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25. ESLI: Enhancing slope one recommendation through local information embedding.
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Zhang, Heng-Ru, Ma, Yuan-Yuan, Yu, Xin-Chao, and Min, Fan
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STANDARD deviations , *MATHEMATICAL functions - Abstract
Slope one is a popular recommendation algorithm due to its simplicity and high efficiency for sparse data. However, it often suffers from under-fitting since the global information of all relevant users/items are considered. In this paper, we propose a new scheme called enhanced slope one recommendation through local information embedding. First, we employ clustering algorithms to obtain the user clusters as well as item clusters to represent local information. Second, we predict ratings using the local information of users and items in the same cluster. The local information can detect strong localized associations shared within clusters. Third, we design different fusion approaches based on the local information embedding. In this way, both under-fitting and over-fitting problems are alleviated. Experiment results on the real datasets show that our approaches defeats slope one in terms of both mean absolute error and root mean square error. [ABSTRACT FROM AUTHOR]
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- 2019
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26. Bayesian multivariate reanalysis of large genetic studies identifies many new associations.
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Turchin, Michael C. and Stephens, Matthew
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ERYTHROCYTES , *BLOOD lipids , *MULTIVARIATE analysis , *COMPUTATIONAL biology , *UNIVARIATE analysis - Abstract
Genome-wide association studies (GWAS) have now been conducted for hundreds of phenotypes of relevance to human health. Many such GWAS involve multiple closely-related phenotypes collected on the same samples. However, the vast majority of these GWAS have been analyzed using simple univariate analyses, which consider one phenotype at a time. This is despite the fact that, at least in simulation experiments, multivariate analyses have been shown to be more powerful at detecting associations. Here, we conduct multivariate association analyses on 13 different publicly-available GWAS datasets that involve multiple closely-related phenotypes. These data include large studies of anthropometric traits (GIANT), plasma lipid traits (GlobalLipids), and red blood cell traits (HaemgenRBC). Our analyses identify many new associations (433 in total across the 13 studies), many of which replicate when follow-up samples are available. Overall, our results demonstrate that multivariate analyses can help make more effective use of data from both existing and future GWAS. [ABSTRACT FROM AUTHOR]
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- 2019
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27. A multidimensional understanding of prosperity and well-being at country level: Data-driven explorations.
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Joshanloo, Mohsen, Jovanović, Veljko, and Taylor, Tim
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QUALITY of life measurement , *SOCIAL scientists , *WELL-being , *QUALITY of life , *FACTOR structure , *PARTIALLY ordered sets - Abstract
Social scientists have been interested in measuring the prosperity, well-being, and quality of life of nations, which has resulted in a multiplicity of country-level indicators. However, little is known about the factor structure of these indicators. We explored the structure of quality of life, using country-level data on tens of subjective and objective indicators. Applying factor analysis, we identified three distinct factors that exhibited both overlap and complementarity. This structure was replicated in data from previous years and with a partially different set of variables. The first factor, ‘socio-economic progress’, is dominated by socio-political and economic indicators but also includes life satisfaction, which thus appears to reflect objective living conditions. The second factor, ‘psycho-social functioning’, consists of subjective indicators, such as eudaimonic well-being and positive affective states. The third, ‘negative affectivity’, comprises negatively-valenced affective states. The three macro-factors of societal quality of life demonstrated moderate intercorrelations and differential associations with cultural and ecological variables, providing support for their discriminant validity. Finally, country and regional rankings based on the three societal factors revealed a complex picture that cautions against over-reliance on any single indicator such as life satisfaction. The results underline the need for a broadly-based approach to the measurement of societal quality of life, and provide an empirically-derived multidimensional framework for conceptualizing and measuring quality of life and well-being at country level. This study is thus an initial empirical step towards systematizing the multiple approaches to societal quality of life. [ABSTRACT FROM AUTHOR]
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- 2019
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28. Postural changes in optic nerve and optic nerve sheath diameters in postural orthostatic tachycardia syndrome and spontaneous intracranial hypotension: A cohort study.
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Cipriani, Debora, Rodriguez, Belén, Häni, Levin, Zimmermann, Raya, Fichtner, Jens, Ulrich, Christian T., Raabe, Andreas, Beck, Jürgen, and Z‘Graggen, Werner J.
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OPTIC nerve , *AUTONOMIC nervous system , *ATRIOVENTRICULAR node , *INTRACRANIAL pressure , *SITTING position , *HYPOTENSION , *COHORT analysis , *POSTURAL orthostatic tachycardia syndrome - Abstract
Background: Postural orthostatic tachycardia syndrome is a disorder of the autonomic nervous system. Approximately 30% of patients experience orthostatic headaches. Orthostatic headaches also are a hallmark symptom in spontaneous intracranial hypotension. While the cause of orthostatic headaches in spontaneous intracranial hypotension can be linked to the cerebrospinal fluid loss at the spinal level and consecutively reduced intracranial pressure in the upright position, the cause of orthostatic headaches in postural orthostatic tachycardia syndrome still remains unknown. The present study examined orthostatic changes of intracranial pressure using dynamic ultrasound of the optic nerve and optic nerve sheath diameter in postural orthostatic tachycardia syndrome, spontaneous intracranial hypotension and healthy subjects. Methods: Data was obtained from postural orthostatic tachycardia syndrome patients with (n = 7) and without orthostatic headaches (n = 7), spontaneous intracranial hypotension patients (n = 5) and healthy subjects (n = 8). All participants underwent high-resolution transorbital ultrasound in the supine and upright position to assess optic nerve and optic nerve sheath diameter. Results: Group differences were found in percentage deviations when changing position of optic nerve sheath diameter (p < 0.01), but not regarding the optic nerve diameter. Pairwise comparisons indicated differences in optic nerve sheath diameter only between spontaneous intracranial hypotension and the other groups. No differences were found between postural orthostatic tachycardia syndrome patients with and without orthostatic headaches. Conclusion: This study shows that the size of the optic nerve sheath diameter dynamically decreases during orthostatic stress in spontaneous intracranial hypotension, but not in postural orthostatic tachycardia syndrome with or without orthostatic headaches, which indicates different underlying causes. [ABSTRACT FROM AUTHOR]
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- 2019
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29. Catastrophic factors involved in road accidents: Underlying causes and descriptive analysis.
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Ashraf, Imran, Hur, Soojung, Shafiq, Muhammad, and Park, Yongwan
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TRAFFIC accidents , *TRAFFIC safety , *CITY traffic , *TRAFFIC flow , *TRAFFIC violations , *RATIO analysis , *TRAFFIC fatalities - Abstract
South Korea is ranked as 4th among 34 nations of the Organization for Economic Cooperation and Development with 102 deaths in road accidents per one million population. This paper aims to investigate the factors associated with road accidents in South Korea. The rainfall data of the Korea Meteorological Administration and road accidents data of Traffic Accident Analysis System of Korea Road Traffic Authority is analyzed for this purpose. In this connection, multivariate regression analysis and ratio analysis with the descriptive analysis are performed to uncover the catastrophic factors involved. In turn, the results reveal that traffic volume is the leading factor in road accidents. The limited road extension of 1.47% compared to the 4.14% per annum growth of the vehicles is resulting in road accidents at such a large scale. The increasing proportion of passenger cars accelerate road accidents as well. 56% of accidents occur by the infringement of safety driving violations. The drivers with higher driving experience tend to have a higher accident ratio. The collected data is analyzed in terms of gender, driver experience, type of violations and accidents as well as the associated time of the accidents when they happen. The results indicate that 36.29% and 53.01% of accidents happen by male drivers in the day and night time, respectively. 29.15% of crashes happen due to safety infringement and violations of 41 to 60 years old drivers. The results demonstrate that population density is associated with the accidents frequency and lower density results in an increased number of accidents. The necessity of the state-of-the-art regulations to govern the urban road traffic is beyond dispute, and it becomes even more crucial for citizens’ relief since in our daily lives road accidents are getting more diverse. [ABSTRACT FROM AUTHOR]
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- 2019
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30. Dissociating the sequential dependency of subjective temporal order from subjective simultaneity.
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Recio, Renan Schiavolin, Cravo, André Mascioli, de Camargo, Raphael Yokoingawa, and van Wassenhove, Virginie
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SENSORY perception , *COLOR vision , *MATHEMATICAL functions , *PSYCHOMETRICS , *CURVE fitting - Abstract
The physical simultaneity between two events can differ from our point of subjective simultaneity (PSS). Studies using simultaneity judgments (SJ) and temporal order judgments (TOJ) tasks have shown that whether two events are reported as simultaneous is highly context-dependent. It has been recently suggested that the interval between the two events in the previous trial can modulate judgments both in SJ and TOJ tasks, an effect named rapid recalibration. In this work, we investigated rapid recalibration in SJ and TOJ tasks and tested whether centering the range of presented intervals on perceived simultaneity modulated this effect. We found a rapid recalibration effect in TOJ, but not in SJ. Moreover, we found that centering the intervals on objective or subjective simultaneity did not change the pattern of results. Interestingly, we also found no correlations between an individual’s PSS in TOJ and in SJ tasks, which corroborates other studies in suggesting that these two psychophysical measures may capture different processes. [ABSTRACT FROM AUTHOR]
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- 2019
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31. Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.
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Traylor, Matthew, Knevel, Rachel, Cui, Jing, Taylor, John, Harm-Jan, Westra, Conaghan, Philip G., Cope, Andrew P., Curtis, Charles, Emery, Paul, Newhouse, Stephen, Patel, Hamel, Steer, Sophia, Gregersen, Peter, Shadick, Nancy A., Weinblatt, Michael E., Van Der Helm-van Mil, Annette, Barrett, Jennifer H., Morgan, Ann W., Lewis, Cathryn M., and Scott, Ian C.
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RHEUMATOID arthritis , *META-analysis , *RHEUMATOID factor , *SECONDARY analysis , *DISEASE duration , *DNA damage , *NATALIZUMAB - Abstract
Background: Previous studies of radiological damage in rheumatoid arthritis (RA) have used candidate-gene approaches, or evaluated single genome-wide association studies (GWAS). We undertook the first meta-analysis of GWAS of RA radiological damage to: (1) identify novel genetic loci for this trait; and (2) test previously validated variants. Methods: Seven GWAS (2,775 RA cases, of a range of ancestries) were combined in a meta-analysis. Radiological damage was assessed using modified Larsen scores, Sharp van Der Heijde scores, and erosive status. Single nucleotide polymophsim (SNP) associations with radiological damage were tested at a single time-point using regression models. Primary analyses included age and disease duration as covariates. Secondary analyses also included rheumatoid factor (RF). Meta-analyses were undertaken in trans-ethnic and European-only cases. Results: In the trans-ethnic primary meta-analysis, one SNP (rs112112734) in close proximity to HLA-DRB1, and strong linkage disequilibrium with the shared-epitope, attained genome-wide significance (P = 4.2x10-8). In the secondary analysis (adjusting for RF) the association was less significant (P = 1.7x10-6). In both trans-ethnic primary and secondary meta-analyses 14 regions contained SNPs with associations reaching P<5x10-6; in the European primary and secondary analyses 13 and 10 regions contained SNPs reaching P<5x10-6, respectively. Of the previously validated SNPs for radiological progression, only rs660895 (tagging HLA-DRB1*04:01) attained significance (P = 1.6x10-5) and had a consistent direction of effect across GWAS. Conclusions: Our meta-analysis confirms the known association between the HLA-DRB1 shared epitope and RA radiological damage. The lack of replication of previously validated non-HLA markers highlights a requirement for further research to deliver clinically-useful prognostic genetic markers. [ABSTRACT FROM AUTHOR]
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- 2019
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32. Cognitive, relational and task crafting: Spanish adaptation and analysis of psychometric properties of the Job Crafting Questionnaire.
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Letona-Ibañez, Onintze, Carrasco, Maria, Martinez-Rodriguez, Silvia, Amillano, Alejandro, and Ortiz-Marques, Nuria
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CONFIRMATORY factor analysis , *EXPLORATORY factor analysis , *CRONBACH'S alpha , *MULTITRAIT multimethod techniques , *FACTOR analysis , *WORK design , *JOB descriptions - Abstract
Even though classic job design theories have evolved over the years and become more focused on employees’ ability to autonomously change their job characteristics, tools to assess job crafting are still limited. The purpose of this study was to analyze the psychometric properties of the Spanish version of the Job Crafting Questionnaire (JCQ), taking into account the valuable contribution made by Wrzesniewski and Dutton’s model to the understanding of the job crafting concept. The total sample consisted of 768 employees (participants’ mean age was 41.63 and 49.7% of them were women). The sample was randomly divided into two halves in order to conduct two factor analyses (Exploratory Factor Analysis and Confirmatory Factor Analysis). Concurrent and convergent validity was assessed by computing correlations with validated questionnaires for measuring job crafting (Job Crafting Scale, JCS), engagement (Utrecht Work Engagement Scale, UWES-9) and job burnout (Maslach Burnout Inventory-General Survey, MBI-GS). The results indicated a high level of internal consistency (Cronbach’s alpha = .880) which was similar to the original scale, and provided a good fit to the three-dimensional model tested. Appropriate evidence of construct validity was also shown (r = .45 with total JCS; r = .52 with total UWES-9 and r-values between -.33 and .45 with MBI dimensions). The results confirmed that the Spanish translation of the JCQ is a suitable tool for measuring job crafting and enabling practitioners and researchers to further expand the existing knowledge of this concept. [ABSTRACT FROM AUTHOR]
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- 2019
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33. Trends in NBA and Euroleague basketball: Analysis and comparison of statistical data from 2000 to 2017.
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Mandić, Radivoj, Jakovljević, Saša, Erčulj, Frane, and Štrumbelj, Erik
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STATISTICS , *BASKETBALL playoffs , *BASKETBALL , *TREND analysis - Abstract
We analyse and compare NBA and Euroleague basketball through box-score statistics in the period from 2000 to 2017. Overall, the quantitative differences between the NBA and Euroleague have decreased and are still decreasing. Differences are even smaller after we adjust for game length and when playoff NBA basketball is considered instead of regular season basketball. The differences in factors that contribute to success are also very small—(Oliver’s) four factors derived from box-score statistics explain most of the variability in team success even if the coefficients are determined for both competitions simultaneously instead of each competition separately. The largest difference is game pace—in the NBA there are more possessions per game. The number of blocks, the defensive rebounding rate and the number of free throws per foul committed are also higher in the NBA, while the number of fouls committed is lower. Most of the differences that persist can be reasonably explained by the contrasts between the better athleticism of NBA players and more emphasis on tactical aspects of basketball in the Euroleague. [ABSTRACT FROM AUTHOR]
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- 2019
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34. What is the optimum time for initiation of early mobilization in mechanically ventilated patients? A network meta-analysis.
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Ding, Nannan, Zhang, Zhigang, Zhang, Caiyun, Yao, Li, Yang, Liping, Jiang, Biantong, Wu, Yuchen, Jiang, Lingjie, and Tian, Jinhui
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META-analysis , *INTENSIVE care units , *GREY literature , *CHINESE literature , *HEALTH facilities , *DATABASE searching - Abstract
Early mobilization has been proven to be an effective and safe intervention for preventing complications in mechanically ventilated patients; however, there is currently no unified definition of the optimal mobilization initiation time, hindering widespread clinical implementation. As clinicians are increasingly aware of the benefits of early mobilization, the definition of early mobilization is important. The purpose of this study was to evaluate the effects of different early mobilization initiation times on mechanically ventilated patients and rank these times for practical consideration. The Chinese Biomedical Literature Database, the Chinese Knowledge Infrastructure, Wanfang Data, PubMed, Cochrane Library, Web of Science, and Embase databases, along with grey literature and reference lists, were searched for randomized control trials (RCTs) that evaluated the effects of early mobilization for improving patient outcomes; databases were searched from inception to October 2018. Two authors extracted data independently, using a predesigned Excel form, and assessed the quality of included RCTs according to the Cochrane Handbook (v5.1.0). Data were analyzed using Stata (v13.0) and Review Manager (v5.3.0). A total of 15 RCTs involving 1726 patients and seven mobilization initiation times (which were all compared to usual care) were included in our analysis. Network meta-analysis showed that mechanical ventilation for 48–72 h may be optimal to improve intensive care unit acquired weakness (ICU-AW) and reduce the duration of mechanical ventilation; however, there were no significant differences in length of ICU stay according to mobilization initiation time. The results of this study indicate that initiation of mobilization within 48–72 h of mechanical ventilation may be optimal for improving clinical outcomes for mechanically ventilated patients. [ABSTRACT FROM AUTHOR]
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- 2019
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35. Differential Requirements for the RAD51 Paralogs in Genome Repair and Maintenance in Human Cells.
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Garcin, Edwige B., Gon, Stéphanie, Sullivan, Meghan R., Brunette, Gregory J., Cian, Anne De, Concordet, Jean-Paul, Giovannangeli, Carine, Dirks, Wilhelm G., Eberth, Sonja, Bernstein, Kara A., Prakash, Rohit, Jasin, Maria, and Modesti, Mauro
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RAD51 recombinase , *GENOMES , *GENETICS , *MITOMYCIN C , *EPITHELIAL cells - Abstract
Deficiency in several of the classical human RAD51 paralogs [RAD51B, RAD51C, RAD51D, XRCC2 and XRCC3] is associated with cancer predisposition and Fanconi anemia. To investigate their functions, isogenic disruption mutants for each were generated in non-transformed MCF10A mammary epithelial cells and in transformed U2OS and HEK293 cells. In U2OS and HEK293 cells, viable ablated clones were readily isolated for each RAD51 paralog; in contrast, with the exception of RAD51B, RAD51 paralogs are cell-essential in MCF10A cells. Underlining their importance for genomic stability, mutant cell lines display variable growth defects, impaired sister chromatid recombination, reduced levels of stable RAD51 nuclear foci, and hyper-sensitivity to mitomycin C and olaparib. Altogether these observations underscore the contributions of RAD51 paralogs in diverse DNA repair processes, and demonstrate essential differences in different cell types. Finally, this study will provide useful reagents to analyze patient-derived mutations and to investigate mechanisms of chemotherapeutic resistance deployed by cancers. [ABSTRACT FROM AUTHOR]
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- 2019
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36. A systematic review and evaluation of Zika virus forecasting and prediction research during a public health emergency of international concern.
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Kobres, Pei-Ying, Chretien, Jean-Paul, Johansson, Michael A., Morgan, Jeffrey J., Whung, Pai-Yei, Mukundan, Harshini, Del Valle, Sara Y., Forshey, Brett M., Quandelacy, Talia M., Biggerstaff, Matthew, Viboud, Cecile, and Pollett, Simon
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PUBLIC health research , *ZIKA virus , *META-analysis , *WORLD health , *PANDEMICS - Abstract
Introduction: Epidemic forecasting and prediction tools have the potential to provide actionable information in the midst of emerging epidemics. While numerous predictive studies were published during the 2016–2017 Zika Virus (ZIKV) pandemic, it remains unknown how timely, reproducible, and actionable the information produced by these studies was. Methods: To improve the functional use of mathematical modeling in support of future infectious disease outbreaks, we conducted a systematic review of all ZIKV prediction studies published during the recent ZIKV pandemic using the PRISMA guidelines. Using MEDLINE, EMBASE, and grey literature review, we identified studies that forecasted, predicted, or simulated ecological or epidemiological phenomena related to the Zika pandemic that were published as of March 01, 2017. Eligible studies underwent evaluation of objectives, data sources, methods, timeliness, reproducibility, accessibility, and clarity by independent reviewers. Results: 2034 studies were identified, of which n = 73 met the eligibility criteria. Spatial spread, R0 (basic reproductive number), and epidemic dynamics were most commonly predicted, with few studies predicting Guillain-Barré Syndrome burden (4%), sexual transmission risk (4%), and intervention impact (4%). Most studies specifically examined populations in the Americas (52%), with few African-specific studies (4%). Case count (67%), vector (41%), and demographic data (37%) were the most common data sources. Real-time internet data and pathogen genomic information were used in 7% and 0% of studies, respectively, and social science and behavioral data were typically absent in modeling efforts. Deterministic models were favored over stochastic approaches. Forty percent of studies made model data entirely available, 29% provided all relevant model code, 43% presented uncertainty in all predictions, and 54% provided sufficient methodological detail to allow complete reproducibility. Fifty-one percent of predictions were published after the epidemic peak in the Americas. While the use of preprints improved the accessibility of ZIKV predictions by a median of 119 days sooner than journal publication dates, they were used in only 30% of studies. Conclusions: Many ZIKV predictions were published during the 2016–2017 pandemic. The accessibility, reproducibility, timeliness, and incorporation of uncertainty in these published predictions varied and indicates there is substantial room for improvement. To enhance the utility of analytical tools for outbreak response it is essential to improve the sharing of model data, code, and preprints for future outbreaks, epidemics, and pandemics. [ABSTRACT FROM AUTHOR]
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- 2019
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37. The efficacy of dihydroartemisinin-piperaquine and artemether-lumefantrine with and without primaquine on Plasmodium vivax recurrence: A systematic review and individual patient data meta-analysis.
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Commons, Robert J., Simpson, Julie A., Thriemer, Kamala, Abreha, Tesfay, Adam, Ishag, Anstey, Nicholas M., Assefa, Ashenafi, Awab, Ghulam R., Baird, J. Kevin, Barber, Bridget E., Chu, Cindy S., Dahal, Prabin, Daher, André, Davis, Timothy M. E., Dondorp, Arjen M., Grigg, Matthew J., Humphreys, Georgina S., Hwang, Jimee, Karunajeewa, Harin, and Laman, Moses
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META-analysis , *PLASMODIUM vivax , *ANTIMALARIALS , *REGRESSION analysis , *CONFIDENCE intervals - Abstract
Background: Artemisinin-based combination therapy (ACT) is recommended for uncomplicated Plasmodium vivax malaria in areas of emerging chloroquine resistance. We undertook a systematic review and individual patient data meta-analysis to compare the efficacies of dihydroartemisinin-piperaquine (DP) and artemether-lumefantrine (AL) with or without primaquine (PQ) on the risk of recurrent P. vivax.Methods and Findings: Clinical efficacy studies of uncomplicated P. vivax treated with DP or AL and published between January 1, 2000, and January 31, 2018, were identified by conducting a systematic review registered with the International Prospective Register of Systematic Reviews (PROSPERO): CRD42016053310. Investigators of eligible studies were invited to contribute individual patient data that were pooled using standardised methodology. The effect of mg/kg dose of piperaquine/lumefantrine, ACT administered, and PQ on the rate of P. vivax recurrence between days 7 and 42 after starting treatment were investigated by Cox regression analyses according to an a priori analysis plan. Secondary outcomes were the risk of recurrence assessed on days 28 and 63. Nineteen studies enrolling 2,017 patients were included in the analysis. The risk of recurrent P. vivax at day 42 was significantly higher in the 384 patients treated with AL alone (44.0%, 95% confidence interval [CI] 38.7-49.8) compared with the 812 patients treated with DP alone (9.3%, 95% CI 7.1-12.2): adjusted hazard ratio (AHR) 12.63 (95% CI 6.40-24.92), p < 0.001. The rates of recurrence assessed at days 42 and 63 were associated inversely with the dose of piperaquine: AHRs (95% CI) for every 5-mg/kg increase 0.63 (0.48-0.84), p = 0.0013 and 0.83 (0.73-0.94), p = 0.0033, respectively. The dose of lumefantrine was not significantly associated with the rate of recurrence (1.07 for every 5-mg/kg increase, 95% CI 0.99-1.16, p = 0.0869). In a post hoc analysis, in patients with symptomatic recurrence after AL, the mean haemoglobin increased 0.13 g/dL (95% CI 0.01-0.26) for every 5 days that recurrence was delayed, p = 0.0407. Coadministration of PQ reduced substantially the rate of recurrence assessed at day 42 after AL (AHR = 0.20, 95% CI 0.10-0.41, p < 0.001) and at day 63 after DP (AHR = 0.08, 95% CI 0.01-0.70, p = 0.0233). Results were limited by follow-up of patients to 63 days or less and nonrandomised treatment groups.Conclusions: In this study, we observed the risk of P. vivax recurrence at day 42 to be significantly lower following treatment with DP compared with AL, reflecting the longer period of post-treatment prophylaxis; this risk was reduced substantially by coadministration with PQ. We found that delaying P. vivax recurrence was associated with a small but significant improvement in haemoglobin. These results highlight the benefits of PQ radical cure and also the provision of blood-stage antimalarial agents with prolonged post-treatment prophylaxis. [ABSTRACT FROM AUTHOR]- Published
- 2019
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38. Development of a fixed list of terms for the Qualitative Behavioural Assessment of shelter dogs.
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Arena, Laura, Wemelsfelder, Franҫoise, Messori, Stefano, Ferri, Nicola, and Barnard, Shanis
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PRINCIPAL components analysis , *VIDEO excerpts , *ANIMAL behavior , *INTER-observer reliability , *HAWTHORNE effect - Abstract
The shelter environment may have a severe impact on the dogs’ quality of life, and there is thus a need to develop valid tools to assess their welfare. These tools should be sensitive not only to the animals’ physical health but also to their mental health, including the assessment of positive and negative emotions. Qualitative Behaviour Assessment (QBA) is a ‘whole animal’ measure that captures the expressive quality of an animal’s demeanour, using descriptive terms such as ‘relaxed’, ‘anxious’, and ‘playful’. In this study, for the first time, we developed and tested a fixed-list of qualitative QBA terms for application to kennelled dogs. A list of 20 QBA terms was developed based on literature search and an expert opinion survey. Inter-observer reliability was investigated by asking 11 observers to use these terms to score 13 video clips of kennelled dogs. Principal Component Analysis (PCA) was used to extract four main dimensions explaining 70.9% of the total variation between clips. PC1 characterised curious/playful/excitable/sociable demeanour, PC2 ranged from comfortable/relaxed to anxious/nervous/stressed expression, PC3 described fearful demeanour, and PC4 characterised bored/depressed demeanour. Observers’ agreement on the ranking of video clips on these four expressive dimensions was good (Kendall’s W: 0.60–0.80). ANOVA showed a significant effect of observer on mean clip score on all PCs (p<0.05), due to few observers scoring differently from the rest of the group. Results indicate the potential of the proposed list of QBA terms for sheltered dogs to serve, in alignment with other measures, as a non-invasive assessment tool. However, the observer effect on mean PC scores points towards the need for adequate observer training, particularly in live scoring conditions. The QBA scoring tool can be integrated with existing welfare assessment protocols for shelter dogs and strengthen the power of those protocols to evaluate the animals’ experience in shelters. [ABSTRACT FROM AUTHOR]
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- 2019
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39. Incidence and predictors of retreatment in chronic hepatitis B patients after discontinuation of entecavir or tenofovir treatment.
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Ma, Te-Ling, Hu, Tsung-Hui, Hung, Chao-Hung, Wang, Jing-Houng, Lu, Sheng-Nan, and Chen, Chien-Hung
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CHRONIC hepatitis B , *HEPATITIS associated antigen , *HEPATITIS A - Abstract
Background: This study investigated the incidence and predictors of retreatment after discontinuation of either entecavir (ETV) or tenofovir disoproxil fumarate (TDF) treatment in Taiwan. Methods: A total of 535 non-cirrhotic chronic hepatitis B (CHB) patients undergoing either ETV (n = 358) or TDF (n = 177) treatment were enrolled. Patients were followed for at least 12 months after stopping ETV or TDF treatment. Most patients (86.3%) fulfilled the retreatment criteria of Taiwan's National Health Plan. Results: The 5-year cumulative rates of clinical relapse and retreatment were 52.1% and 47%, respectively, in 160 hepatitis B e antigen (HBeAg)-positive patients, and were 62% and 54.8%, respectively, in 375 HBeAg-negative patients. The median duration from the end of treatment until clinical relapse and retreatment was 40 and 57 weeks, respectively, for all patients. Multivariate Cox regression analysis revealed that discontinuing TDF treatment, old age, male gender, and higher baseline HBsAg levels were independent factors of retreatment in HBeAg-positive patients; old age, HBV genotype B, and higher baseline and end-of-treatment HBsAg levels were independent factors in HBeAg-negative patients. A total of 18.8% of retreated patients satisfied the retreatment criteria of hepatic decompensation according to Taiwan's National Health Plan. Of the 64 patients who had clinical relapse without retreatment, 17 achieved sustained virological remission and 26 did not experience clinical relapse until their last visit after clinical relapse. Four patients developed HBsAg loss. Conclusions: The 5-year retreatment rate was about 50% in HBeAg-positive and HBeAg-negative patients. Discontinuing TDF treatment was an independent factor of retreatment in HBeAg-positive patients. [ABSTRACT FROM AUTHOR]
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- 2019
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40. The association between disordered eating and health-related quality of life among children and adolescents: A systematic review of population-based studies.
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Wu, Xiu Yun, Yin, Wen Qiang, Sun, Hong Wei, Yang, Shu Xiang, Li, Xin Yang, and Liu, Hong Qing
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QUALITY of life , *META-analysis , *TEENAGERS , *COMPULSIVE eating , *BULIMIA - Abstract
Background: Previous studies have documented that disordered eating is associated with a wide range of impaired physical and mental health conditions among children and adolescents. The relationship between disordered eating and health-related quality of life (HRQOL) has been predominantly examined in children and adolescents who are overweight or obese or suffer from chronic illnesses. In the last decade, several studies have been conducted to investigate the relationship between disordered eating and HRQOL among school and community children and adolescents. No systematic review or meta-analysis has synthesized the findings from these population-based studies. The purpose of this systematic review and meta-analysis was to synthesize the relationship between disordered eating and HRQOL among the general population of children and adolescents. Methods: We performed a computer search for the English language literature using the databases PUBMED, EMBASE and PSYCINFO to retrieve eligible studies published between 1946 and August 9, 2018. We also searched the relevant articles using PubMed related article search features and manually examined the reference lists of the retrieved full text articles selected from the database search. The association between disordered eating and HRQOL was synthesized using both a qualitative method and a meta-analysis. The review was conducted adhering to the Preferred Reporting Items for Systematic reviews and Meta-Analyses (PRISMA) guidelines. Results: We identified eight studies that met the inclusion criteria and were included in the final synthesis. The studies included six cross-sectional studies and two longitudinal studies. The systematic review found that disordered eating attitudes and behaviors were associated with lower HRQOL among children and adolescents. Children and adolescents with bulimia nervosa (BN), binge eating disorder (BED), purging disorder (PD) and other eating disorder symptoms had poorer HRQOL than their healthy peers without the eating disorder conditions. The meta-analysis using four out of the eight studies showed that disordered eating was significantly associated with poor psychosocial health and lower overall HRQOL among children and adolescents. Conclusion: The present review reveals that disordered eating behaviors and eating disorders are associated with decreased HRQOL in children and adolescents. More prospective studies are needed to ascertain the directions in the relationship between disordered eating and HRQOL among children and adolescents. The findings of this review suggest that health programs for promoting healthy eating and reducing disordered eating behaviors among school children and adolescents may help to enhance the HRQOL and overall health status of these individuals. [ABSTRACT FROM AUTHOR]
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- 2019
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41. Tumor stromal type is associated with stromal PD-L1 expression and predicts outcomes in breast cancer.
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Zhai, Qinglian, Fan, Jiawen, Lin, Qiulian, Liu, Xia, Li, Jinting, Hong, Ruoxi, and Wang, Shusen
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PROGRAMMED cell death 1 receptors , *BREAST cancer , *PROTEIN expression , *HORMONE receptors , *TUMORS , *FLUORESCENCE in situ hybridization - Abstract
Background/Aim: The aim of this study is to determine the relationship between stromal types, PD-L1 status and clinicopathological characteristics in patients with different molecular subtypes of breast cancer. Materials and methods: Protein expression levels of PD-L1 were determined by immunohistochemistry assay. Stromal type was classified based on the maturity of the tumor stroma. Results: Different subtypes of breast cancer had distinct stromal types. Tumors from patients with mature stroma had lower pathological N stage and AJCC stage, more frequent high p53 expression and positive stromal PD-L1 staining. Hormone receptor negative patients had higher frequency of positive stromal PD-L1 staining. Stromal PD-L1 status was also associated with different breast cancer subtypes and EGFR expression level. Importantly, our data revealed that stromal types and stromal PD-L1 status were independent prognostic factors. Conclusion: This study highlighted the importance of stromal types and stromal PD-L1 status in determining clinical outcomes in patients with breast cancer, and suggested that stromal type classification might be readily incorporated into routine clinical risk assessment following curative resection or optimal therapeutic design. [ABSTRACT FROM AUTHOR]
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- 2019
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42. Cardiac output measurements via echocardiography versus thermodilution: A systematic review and meta-analysis.
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Zhang, Yun, Wang, Yan, Shi, Jing, Hua, Zhiqiang, and Xu, Jinyu
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CARDIAC output , *PULMONARY artery catheters , *RANDOM effects model , *BLAND-Altman plot , *META-analysis , *STATISTICAL correlation , *ECHOCARDIOGRAPHY - Abstract
Echocardiography, as a noninvasive hemodynamic evaluation technique, is frequently used in critically ill patients. Different opinions exist regarding whether it can be interchanged with traditional invasive means, such as the pulmonary artery catheter thermodilution (TD) technique. This systematic review aimed to analyze the consistency and interchangeability of cardiac output measurements by ultrasound (US) and TD. Five electronic databases were searched for studies including clinical trials conducted up to June 2019 in which patients’ cardiac output was measured by ultrasound techniques (echocardiography) and TD. The methodological quality of the included studies was evaluated by two independent reviewers who used the Quality Assessment of Diagnostic Accuracy Studies-2 (QUADAS-2), which was tailored according to our systematic review in Review Manager 5.3. A total of 68 studies with 1996 patients were identified as eligible. Meta-analysis and subgroup analysis were used to compare the cardiac output (CO) measured using the different types of echocardiography and different sites of Doppler use with TD. No significant differences were found between US and TD (random effects model: mean difference [MD], -0.14; 95% confidence interval, -0.30 to 0.02; P = 0.08). No significant differences were observed in the subgroup analyses using different types of echocardiography and different sites except for ascending aorta (AA) (random effects model: mean difference [MD], -0.37; 95% confidence interval, -0.74 to -0.01; P = 0.05) of Doppler use. The median of bias and limits of agreement were -0.12 and ±0.94 L/min, respectively; the median of correlation coefficient was 0.827 (range, 0.140–0.998). Although the difference in CO between echocardiography by different types or sites and TD was not entirely consistent, the overall effect of meta-analysis showed that no significant differences were observed between US and TD. The techniques may be interchangeable under certain conditions. [ABSTRACT FROM AUTHOR]
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- 2019
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43. The effectiveness of the quality improvement collaborative strategy in low- and middle-income countries: A systematic review and meta-analysis.
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Garcia-Elorrio, Ezequiel, Rowe, Samantha Y., Teijeiro, Maria E., Ciapponi, Agustín, and Rowe, Alexander K.
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MIDDLE-income countries , *META-analysis , *MEDICAL personnel , *TIME series analysis , *MEDICAL care use , *SECONDARY analysis - Abstract
Background: Quality improvement collaboratives (QICs) have been used to improve health care for decades. Evidence on QIC effectiveness has been reported, but systematic reviews to date have little information from low- and middle-income countries (LMICs). Objective: To assess the effectiveness of QICs in LMICs. Methods: We conducted a systematic review following Cochrane methods, the Grading of Recommendations Assessment, Development, and Evaluation (GRADE) approach for quality of evidence grading, and the Preferred Reporting Items for Systematic Reviews and Meta-analyses (PRISMA) statement for reporting. We searched published and unpublished studies between 1969 and March 2019 from LMICs. We included papers that compared usual practice with QICs alone or combined with other interventions. Pairs of reviewers independently selected and assessed the risk of bias and extracted data of included studies. To estimate strategy effectiveness from a single study comparison, we used the median effect size (MES) in the comparison for outcomes in the same outcome group. The primary analysis evaluated each strategy group with a weighted median and interquartile range (IQR) of MES values. In secondary analyses, standard random-effects meta-analysis was used to estimate the weighted mean MES and 95% confidence interval (CI) of the mean MES of each strategy group. This review is registered with PROSPERO (International Prospective Register of Systematic Reviews): CRD42017078108. Results: Twenty-nine studies were included; most (21/29, 72.4%) were interrupted time series studies. Evidence quality was generally low to very low. Among studies involving health facility-based health care providers (HCPs), for “QIC only”, effectiveness varied widely across outcome groups and tended to have little effect for patient health outcomes (median MES less than 2 percentage points for percentage and continuous outcomes). For “QIC plus training”, effectiveness might be very high for patient health outcomes (for continuous outcomes, median MES 111.6 percentage points, range: 96.0 to 127.1) and HCP practice outcomes (median MES 52.4 to 63.4 percentage points for continuous and percentage outcomes, respectively). The only study of lay HCPs, which used “QIC plus training”, showed no effect on patient care-seeking behaviors (MES -0.9 percentage points), moderate effects on non-care-seeking patient behaviors (MES 18.7 percentage points), and very large effects on HCP practice outcomes (MES 50.4 percentage points). Conclusions: The effectiveness of QICs varied considerably in LMICs. QICs combined with other invention components, such as training, tended to be more effective than QICs alone. The low evidence quality and large effect sizes for QIC plus training justify additional high-quality studies assessing this approach in LMICs. [ABSTRACT FROM AUTHOR]
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- 2019
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44. Classification of neurons in the adult mouse cochlear nucleus: Linear discriminant analysis.
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Manis, Paul B., Kasten, Michael R., and Xie, Ruili
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COCHLEAR nucleus , *FISHER discriminant analysis , *HYPERPOLARIZATION (Cytology) , *NEURONS , *PYRAMIDAL neurons , *NEUROTRANSMITTER receptors , *TRANSGENIC mice - Abstract
The cochlear nucleus (CN) transforms the spike trains of spiral ganglion cells into a set of sensory representations that are essential for auditory discriminations and perception. These transformations require the coordinated activity of different classes of neurons that are embryologically derived from distinct sets of precursors. Decades of investigation have shown that the neurons of the CN are differentiated by their morphology, neurotransmitter receptors, ion channel expression and intrinsic excitability. In the present study we have used linear discriminant analysis (LDA) to perform an unbiased analysis of measures of the responses of CN neurons to current injections to objectively categorize cells on the basis of both morphology and physiology. Recordings were made from cells in brain slices from CBA/CaJ mice and a transgenic mouse line, NF107, crossed against the Ai32 line. For each cell, responses to current injections were analyzed for spike rate, spike shape, input resistance, resting membrane potential, membrane time constant, hyperpolarization-activated sag and time constant. Cells were filled with dye for morphological classification, and visually classified according to published accounts. The different morphological classes of cells were separated with the LDA. Ventral cochlear nucleus (VCN) bushy cells, planar multipolar (T-stellate) cells, and radiate multipolar (D-stellate) cells were in separate clusters and separate from all of the neurons from the dorsal cochlear nucleus (DCN). Within the DCN, the pyramidal cells and tuberculoventral cells were largely separated from a distinct cluster of cartwheel cells. principal axes, whereas VCN cells were in 3 clouds approximately orthogonal to this plane. VCN neurons from the two mouse strains overlapped but were slightly separated, indicating either a strain dependence or differences in slice preparation methods. We conclude that cochlear nucleus neurons can be objectively distinguished based on their intrinsic electrical properties, but such distinctions are still best aided by morphological identification. [ABSTRACT FROM AUTHOR]
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- 2019
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45. eQTL mapping of rare variant associations using RNA-seq data: An evaluation of approaches.
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Lutz, Sharon Marie, Thwing, Annie, and Fingerlin, Tasha
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POISSON regression , *REGRESSION analysis , *GAUSSIAN distribution , *RNA sequencing , *GENE expression , *DATA transformations (Statistics) - Abstract
Expression quantitative trait loci (eQTL) provide insight on transcription regulation and illuminate the molecular basis of phenotypic outcomes. High-throughput RNA sequencing (RNA-seq) is becoming a popular technique to measure gene expression abundance. Traditional eQTL mapping methods for microarray expression data often assume the expression data follow a normal distribution. As a result, for RNA-seq data, total read count measurements can be normalized by normal quantile transformation in order to fit the data using a linear regression. Other approaches model the total read counts using a negative binomial regression. While these methods work well for common variants (minor allele frequencies > 5% or 1%), an extension of existing methodology is needed to accommodate a collection of rare variants in RNA-seq data. Here, we examine 2 approaches that are direct applications of existing methodology and apply these approaches to RNAseq studies: 1) collapsing the rare variants in the region and using either negative binomial regression or Poisson regression and 2) using the normalized read counts with the Sequence Kernel Association Test (SKAT), the burden test for SKAT (SKAT-Burden), or an optimal combination of these two tests (SKAT-O). We evaluated these approaches via simulation studies under numerous scenarios and applied these approaches to the 1,000 Genomes Project. [ABSTRACT FROM AUTHOR]
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- 2019
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46. Macrogeographic genetic structure of Lutzomyia longipalpis complex populations using Next Generation Sequencing.
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Casaril, Aline Etelvina, Alonso, Diego Peres, Franco, Karina Garcia, Alvarez, Marcus Vinicius Niz, Barrios, Suellem Petilim Gomes, Fernandes, Wagner de Souza, Infran, Jucelei de Oliveira Moura, Rodrigues, Ana Caroline Moura, Ribolla, Paulo Eduardo Martins, and Oliveira, Alessandra Gutierrez de
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LUTZOMYIA , *SAND flies , *POPULATION differentiation , *VISCERAL leishmaniasis , *INSECT populations - Abstract
Lutzomyia longipalpis is the main vector of Leishmania infantum, the causative agent of visceral leishmaniasis in the Neotropical realm. Its taxonomic status has been widely discussed once it encompasses a complex of species. The knowledge about the genetic structure of insect vector populations helps the elucidation of components and interactions of the disease ecoepidemiology. Thus, the objective of this study was to genotypically analyze populations of the Lu. longipalpis complex from a macrogeographic perspective using Next Generation Sequencing. Polymorphism analysis of three molecular markers was used to access the levels of population genetic structure among nine different populations of sand flies. Illumina Amplicon Sequencing Protocol® was used to identify possible polymorphic sites. The library was sequenced on paired-end Illumina MiSeq platform. Significant macrogeographical population differentiation was observed among Lu. longipalpis populations via PCA and DAPC analyses. Our results revealed that populations of Lu. longipalpis from the nine municipalities were grouped into three clusters. In addition, it was observed that the levels of Lu. longipalpis population structure could be associated with distance isolation. This new sequencing method allowed us to study different molecular markers after a single sequencing run, and to evaluate population and inter-species differences on a macrogeographic scale. [ABSTRACT FROM AUTHOR]
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- 2019
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47. Improving the forecasting performance of temporal hierarchies.
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Spiliotis, Evangelos, Petropoulos, Fotios, and Assimakopoulos, Vassilios
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MATHEMATICAL functions , *PHYSICAL sciences , *COGNITIVE science , *APPLIED mathematics , *LIFE sciences - Abstract
Temporal hierarchies have been widely used during the past few years as they are capable to provide more accurate coherent forecasts at different planning horizons. However, they still display some limitations, being mainly subject to the forecasting methods used for generating the base forecasts and the particularities of the examined series. This paper deals with such limitations by considering three different strategies: (i) combining forecasts of multiple methods, (ii) applying bias adjustments and (iii) selectively implementing temporal hierarchies to avoid seasonal shrinkage. The proposed strategies can be applied either separately or simultaneously, being complements to the method considered for reconciling the base forecasts and completely independent from each other. Their effect is evaluated using the monthly series of the M and M3 competitions. The results are very promising, displaying lots of potential for improving the performance of temporal hierarchies, both in terms of accuracy and bias. [ABSTRACT FROM AUTHOR]
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- 2019
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48. Is latent tuberculosis infection challenging in Iranian health care workers? A systematic review and meta-analysis.
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YektaKooshali, Mohammad Hossein, Movahedzadeh, Farahnaz, Foumani, Ali Alavi, Sabati, Hoda, and Jafari, Alireza
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MEDICAL subject headings , *MEDICAL care , *LATENT variables , *META-analysis , *PERSIAN language , *SEARCH engines - Abstract
Background: The high chances of getting latent tuberculosis infection (LTBI) among health care workers (HCWs) will an enormous problem in low and upper-middle-income countries. Method: Search strategies were done through both national and international databases include SID, Barakat knowledge network system, Irandoc, Magiran, Iranian national library, web of science, Scopus, PubMed/MEDLINE, OVID, EMBASE, the Cochrane library, and Google Scholar search engine. The Persian and the English languages were used as the filter in national and international databases, respectively. Medical Subject Headings (MeSH) terms was used to controlling comprehensive vocabulary. The search terms were conducted without time limitation till January 01, 2019. Results: The prevalence of LTBI in Iranian’s HCWs, based on the PPD test was 27.13% [CI95%: 18.64–37.7]. The highest prevalence of LTBI in Iranian’s HCWs were estimated 41.4% [CI95%: 25.4–59.5] in the north, and 33.8% [CI95%: 21.1–49.3] in the west. The lowest prevalence of LTBI was evaluated 18.2% [CI95%: 3.4–58.2] in the south of Iran. The prevalence of LTBI in Iranian’s HCWs who had work-experience more than 20 years old were estimated 20.49% [CI95%: 11–34.97]. In the PPD test, the prevalence of LTBI in Iranian’s HCWs who had received the Bacille Calmette–Guérin (BCG) was estimated 15% [CI95%: 3.6–47.73]. While, in the QFT, the prevalence of LTBI in Iranian’s HCWs in non-vaccinated was estimated 25.71% [CI95%: 13.96–42.49]. Conclusions: This meta-analysis shows the highest prevalence of LTBI in Iranian’s HCWs in the north and the west probably due to neighboring countries like Azerbaijan and Iraq, respectively. It seems that Iranian’s HCWs have not received the necessary training to prevent of TB. We also found that BCG was not able to protect Iranian’s HCWs from TB infections, completely. [ABSTRACT FROM AUTHOR]
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- 2019
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49. E-MOVIE - Experimental MOVies for Induction of Emotions in neuroscience: An innovative film database with normative data and sex differences.
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Maffei, Antonio and Angrilli, Alessandro
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EMOTIONAL state , *EMOTIONAL conditioning , *PROSOCIAL behavior , *SOCIAL psychology , *SADNESS , *AVERSION , *AFFECTIVE neuroscience - Abstract
The need for a validated set of emotional clips to elicit emotions in more ecological experiments is increasing. Here we present the validation of a new database of emotional films, named E-MOVIE, which includes, in this first validation phase, 39 excerpts arranged in six categories, three negative (Fear, Sadness and Compassion), two positive (Erotic and Scenery) and a Neutral category. Notably, Compassion and Scenery are new in the field as they were not included in other databases. The clips in E-MOVIE are characterized by homogenous durations of approximately two minutes, which make them suitable for psychophysiological research. In order to study the affective profile prompted by each category 174 participants (112 women) rated the movies on multiple dimensions, namely valence and arousal, intensity and discreteness of the induction of one of the six basic emotions and, finally, intensity of the experience of the emotional states defined by a series of emotional adjectives. Erotic clips were effective in the elicitation of a positive emotional state, characterized by high levels of arousal and excitement. On the other hand, Fear clips (selected without blood to avoid disgust reaction) prompted an affect characterized by high arousal, low valence and high levels of reported fear and anxiety. Women reported greater unpleasantness, distress, anxiety and jittery than men to the three negative categories. Compassion clips, characterized by the depiction of crying characters, were able to induce an affective state dominated by sadness and feeling touched, consistent with an empathic reaction to emotional sufferance. Sadness clips, instead, elicited an affective state characterized by sadness together with distress and angst. We also demonstrated that clips depicting natural environments (i.e. Scenery) prompted in the viewer a surprised, inspired affective state, characterized by high valence and arousal (especially in males), a result which suggests that their past categorization as neutral stimuli was inaccurate and problematic. [ABSTRACT FROM AUTHOR]
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- 2019
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50. Intermolecular interactions play a role in the distribution and transport of charged contrast agents in a cartilage model.
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Algotsson, Jenny, Jönsson, Peter, Forsman, Jan, Topgaard, Daniel, and Söderman, Olle
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INTERMOLECULAR interactions , *ELECTROLYTE solutions , *ARTICULAR cartilage , *CARTILAGE , *POLYELECTROLYTES , *MONTE Carlo method , *SYNOVIAL fluid - Abstract
The transport and distribution of charged molecules in polyelectrolyte solutions are of both fundamental and practical importance. A practical example, which is the specific subject addressed in the present paper, is the transport and distribution of charged species into cartilage. The charged species could be a contrast agent or a drug molecule involved in diagnosis or treatment of the widespread degenerative disease osteoarthritis, which leads to degradation of articular cartilage. Associated scientific issues include the rate of transport and the equilibrium concentrations of the charged species in the cartilage and the synovial fluid. To address these questions, we present results from magnetic resonance micro-imaging experiments on a model system of articular cartilage. The experiments yield temporally and spatially resolved data on the transport of a negatively charged contrast agent (charge = -2), used in medical examinations of cartilage, into a polyelectrolyte solution, which is designed to capture the electrostatic interactions in cartilage. Also presented is a theoretical analysis of the transport where the relevant differential equations are solved using finite element techniques as well as treated with approximate analytical expressions. In the analysis, non-ideal effects are included in the treatment of the mobile species in the system. This is made possible by using results from previous Monte Carlo simulations. The results demonstrate the importance of taking non-idealities into account when data from measurements of transport of charged solutes in a system with fixed charges from biological polyelectrolytes are analyzed. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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