13 results on '"Byrne, Helen M."'
Search Results
2. Bayesian inference of agent-based models: a tool for studying kidney branching morphogenesis
- Author
-
Lambert, Ben, MacLean, Adam L., Fletcher, Alexander G., Combes, Alexander N., Little, Melissa H., and Byrne, Helen M.
- Published
- 2018
- Full Text
- View/download PDF
3. A Current Perspective on Wound Healing and Tumour-Induced Angiogenesis
- Author
-
Flegg, Jennifer A., Menon, Shakti N., Byrne, Helen M., and McElwain, D. L. Sean
- Published
- 2020
- Full Text
- View/download PDF
4. Mathematical Model of Hyperbaric Oxygen Therapy Applied to Chronic Diabetic Wounds
- Author
-
Flegg, Jennifer A., Byrne, Helen M., and McElwain, D. L. Sean
- Published
- 2010
- Full Text
- View/download PDF
5. Mathematical modelling of a hypoxia-regulated oncolytic virus delivered by tumour-associated macrophages
- Author
-
Boemo, Michael A, Byrne, Helen M, Boemo, Michael [0000-0002-0326-8200], and Apollo - University of Cambridge Repository
- Subjects
Mathematical modelling ,Theory of mixtures ,Macrophages ,Tumour-associated macrophages ,Bioengineering ,Oncolytic adenovirus ,Models, Theoretical ,Oncolytic Viruses ,Cell Movement ,Neoplasms ,Animals ,Humans ,Tumor Hypoxia ,Hypoxia - Abstract
Tumour hypoxia has long presented a challenge for cancer therapy: Poor vascularisation in hypoxic regions hinders both the delivery of chemotherapeutic agents and the response to radiotherapy, and hypoxic cancer cells that survive treatment can trigger tumour regrowth after treatment has ended. Tumour-associated macrophages are attractive vehicles for drug delivery because they localise in hypoxic areas of the tumour. In this paper, we derive a mathematical model for the infiltration of an in vitro tumour spheroid by macrophages that have been engineered to release an oncolytic adenovirus under hypoxic conditions. We use this model to predict the efficacy of treatment schedules in which radiotherapy and the engineered macrophages are given in combination. Our work suggests that engineered macrophages should be introduced immediately after radiotherapy for maximum treatment efficacy. Our model provides a framework that may guide future experiments to determine how multiple rounds of radiotherapy and macrophage virotherapy should be coordinated to maximise therapeutic responses.
- Published
- 2019
6. Abnormal morphology biases hematocrit distribution in tumor vasculature and contributes to heterogeneity in tissue oxygenation.
- Author
-
Bernabeu, Miguel O., Köry, Jakub, Grogan, James A., Markelc, Bostjan, Beardo, Albert, d'Avezac, Mayeul, Enjalbert, Romain, Kaeppler, Jakob, Daly, Nicholas, Hetherington, James, Krüger, Timm, Maini, Philip K., Pitt-Francis, Joe M., Muschel, Ruth J., Alarcoón, Tomás, and Byrne, Helen M.
- Subjects
ERYTHROCYTES ,HETEROGENEITY ,TRANSPORT theory ,BLOOD vessels ,TREATMENT effectiveness - Abstract
Oxygen heterogeneity in solid tumors is recognized as a limiting factor for therapeutic efficacy. This heterogeneity arises from the abnormal vascular structure of the tumor, but the precise mechanisms linking abnormal structure and compromised oxygen transport are only partially understood. In this paper, we investigate the role that red blood cell (RBC) transport plays in establishing oxygen heterogeneity in tumor tissue. We focus on heterogeneity driven by network effects, which are challenging to observe experimentally due to the reduced fields of view typically considered. Motivated by our findings of abnormal vascular patterns linked to deviations from current RBC transport theory, we calculated average vessel lengths L and diameters d from tumor allografts of three cancer cell lines and observed a substantial reduction in the ratio λ = L=d compared to physiological conditions. Mathematical modeling reveals that small values of the ratio λ (i.e., λ<6) can bias hematocrit distribution in tumor vascular networks and drive heterogeneous oxygenation of tumor tissue. Finally, we show an increase in the value of λ in tumor vascular networks following treatment with the antiangiogenic cancer agent DC101. Based on our findings, we propose λ as an effective way of monitoring the efficacy of antiangiogenic agents and as a proxy measure of perfusion and oxygenation in tumor tissue undergoing antiangiogenic treatment. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
7. Mathematical modelling of a hypoxia-regulated oncolytic virus delivered by tumour-associated macrophages.
- Author
-
Boemo, Michael A. and Byrne, Helen M.
- Subjects
- *
HYPOXEMIA , *CANCER cells , *MATHEMATICAL models , *RADIOTHERAPY , *MACROPHAGES - Abstract
Highlights • A continuum model of macrophages releasing an oncolytic virus within a tumour spheroid. • Predictive modelling of this treatment given in combination with radiotherapy. • Investigation into how radiotherapy and oncolytic virotherapy should be scheduled. Abstract Tumour hypoxia has long presented a challenge for cancer therapy: Poor vascularisation in hypoxic regions hinders both the delivery of chemotherapeutic agents and the response to radiotherapy, and hypoxic cancer cells that survive treatment can trigger tumour regrowth after treatment has ended. Tumour-associated macrophages are attractive vehicles for drug delivery because they localise in hypoxic areas of the tumour. In this paper, we derive a mathematical model for the infiltration of an in vitro tumour spheroid by macrophages that have been engineered to release an oncolytic adenovirus under hypoxic conditions. We use this model to predict the efficacy of treatment schedules in which radiotherapy and the engineered macrophages are given in combination. Our work suggests that engineered macrophages should be introduced immediately after radiotherapy for maximum treatment efficacy. Our model provides a framework that may guide future experiments to determine how multiple rounds of radiotherapy and macrophage virotherapy should be coordinated to maximise therapeutic responses. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
8. Growth of confined cancer spheroids : a combined experimental marker, critical modelling approach
- Author
-
Loessner, Daniela, Flegg, Jennifer Anne, Byrne, Helen M., Clements, Judith, and Hutmacher, Dietmar
- Subjects
bioengineered microenvironment ,mathematical modelling ,multicellular spheroids ,060100 BIOCHEMISTRY AND CELL BIOLOGY ,010300 NUMERICAL AND COMPUTATIONAL MATHEMATICS - Abstract
A critical step in the dissemination of ovarian cancer is the formation of multicellular spheroids from cells shed from the primary tumour. The objectives of this study were to apply bioengineered three-dimensional (3D) microenvironments for culturing ovarian cancer spheroids in vitro and simultaneously to build on a mathematical model describing the growth of multicellular spheroids in these biomimetic matrices. Cancer cells derived from human epithelial ovarian carcinoma were embedded within biomimetic hydrogels of varying stiffness and grown for up to 4 weeks. Immunohistochemistry, imaging and growth analyses were used to quantify the dependence of cell proliferation and apoptosis on matrix stiffness, long-term culture and treatment with the anti-cancer drug paclitaxel. The mathematical model was formulated as a free boundary problem in which each spheroid was treated as an incompressible porous medium. The functional forms used to describe the rates of cell proliferation and apoptosis were motivated by the experimental work and predictions of the mathematical model compared with the experimental output. This work aimed to establish whether it is possible to simulate solid tumour growth on the basis of data on spheroid size, cell proliferation and cell death within these spheroids. The mathematical model predictions were in agreement with the experimental data set and simulated how the growth of cancer spheroids was influenced by mechanical and biochemical stimuli including matrix stiffness, culture duration and administration of a chemotherapeutic drug. Our computational model provides new perspectives on experimental results and has informed the design of new 3D studies of chemoresistance of multicellular cancer spheroids.
- Published
- 2013
9. Accounting for cross-immunity can improve forecast accuracy during influenza epidemics.
- Author
-
Sachak-Patwa, Rahil, Byrne, Helen M., and Thompson, Robin N.
- Abstract
Previous exposure to influenza viruses confers cross-immunity against future infections with related strains. However, this is not always accounted for explicitly in mathematical models used for forecasting during influenza outbreaks. We show that, if an influenza outbreak is due to a strain that is similar to one that has emerged previously, then accounting for cross-immunity explicitly can improve the accuracy of real-time forecasts. To do this, we consider two infectious disease outbreak forecasting models. In the first (the "1-group model"), all individuals are assumed to be identical and cross-immunity is not accounted for. In the second (the "2-group model"), individuals who have previously been infected by a related strain are assumed to be less likely to experience severe disease, and therefore recover more quickly, than immunologically naive individuals. We fit both models to estimated case notification data (including symptomatic individuals as well as laboratory-confirmed cases) from Japan from the 2009 H1N1 influenza pandemic, and then generate synthetic data for a future outbreak by assuming that the 2-group model represents the epidemiology of influenza infections more accurately. We use the 1-group model (as well as the 2-group model for comparison) to generate forecasts that would be obtained in real-time as the future outbreak is ongoing, using parameter values estimated from the 2009 epidemic as informative priors, motivated by the fact that without using prior information from 2009, the forecasts are highly uncertain. In the scenario that we consider, the 1-group model only produces accurate outbreak forecasts once the peak of the epidemic has passed, even when the values of important epidemiological parameters such as the lengths of the mean incubation and infectious periods are known exactly. As a result, it is necessary to use the more epidemiologically realistic 2-group model to generate accurate forecasts. Accounting for cross-immunity driven by exposures in previous outbreaks explicitly is expected to improve the accuracy of epidemiological modelling forecasts during influenza outbreaks. • Real-time influenza epidemic forecasts made without informative parameter priors can be uncertain. • The dynamics of future epidemics will depend on the number of cross-immune individuals. • Neglecting cross-immunity in models will result in poor forecasts made in advance. • Real-time forecasts can be enhanced by using information from previous epidemics. • Using a model that accounts for cross-immunity can improve the accuracy of forecasts. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
10. Mathematical modelling of a hypoxia-regulated oncolytic virus delivered by tumour-associated macrophages
- Author
-
Boemo, Michael A and Byrne, Helen M
- Subjects
Mathematical modelling ,Theory of mixtures ,Macrophages ,Tumour-associated macrophages ,Bioengineering ,Oncolytic adenovirus ,Models, Theoretical ,3. Good health ,Oncolytic Viruses ,Cell Movement ,Neoplasms ,Animals ,Humans ,Tumor Hypoxia ,Hypoxia - Abstract
Tumour hypoxia has long presented a challenge for cancer therapy: Poor vascularisation in hypoxic regions hinders both the delivery of chemotherapeutic agents and the response to radiotherapy, and hypoxic cancer cells that survive treatment can trigger tumour regrowth after treatment has ended. Tumour-associated macrophages are attractive vehicles for drug delivery because they localise in hypoxic areas of the tumour. In this paper, we derive a mathematical model for the infiltration of an in vitro tumour spheroid by macrophages that have been engineered to release an oncolytic adenovirus under hypoxic conditions. We use this model to predict the efficacy of treatment schedules in which radiotherapy and the engineered macrophages are given in combination. Our work suggests that engineered macrophages should be introduced immediately after radiotherapy for maximum treatment efficacy. Our model provides a framework that may guide future experiments to determine how multiple rounds of radiotherapy and macrophage virotherapy should be coordinated to maximise therapeutic responses.
11. Modelling the pharmacokinetics and pharmacodynamics of macromolecules for the treatment of wet AMD
- Author
-
Hutton-Smith, Laurence, Gaffney, Eamonn A., Byrne, Helen M., and Maini, Philip K.
- Subjects
510 ,PK/PD ,wet amd ,IVT injection ,mathematical modelling - Abstract
Wet age related macular degeneration (wet AMD) is a highly debilitating retinal disease, the third leading cause of blindness in the world and one the most expensive ocular conditions to care for. Wet AMD is characterised by the proliferation of neovasculature through the retinal posterior and theorised to be, at least in part, induced and driven by excess vascular endothelial growth factor (VEGF). Many current treatments for wet AMD utilise anti-VEGF macromolecules that bind to VEGF. The retina, however, remains a largely inaccessible, and delicate, anatomical region. Due to difficulties in collecting clinical and experimental data, mathematical modelling is playing an increasingly prominent role in understanding the distribution (Pharmacokinetics, PK) and drug-to-target interactions (Pharmacodynamics, PD) for treatments of wet AMD. This thesis will focus on ordinary/partial differential equation (ODE/PDE) models for the PK/PD of anti-VEGF therapeutics, administered via intravitreal (IVT) injection into the mammalian eye. We start in Chapter 2 with a 2-compartment PK/PD ODE model of drug-VEGF interactions in the eye, analysing a clinical dataset to estimate key binding parameters between VEGF and the typical anti-VEGF molecule, ranibizumab. In Chapter 3, we extend the PK ODE framework of the 2-compartment model to include a mechanistic description of the retina, to estimate retinal permeability to macromolecules used for treating wet AMD. In Chapter 4, using the retinal PK model, we reintroduce VEGF to predict concentrations of free VEGF in the retina post-IVT injection. Chapters 5 and 6 model a hypothetical class of anti-VEGF molecules designed to bind not only VEGF but also existing vitreal superstructures, analysing how dose and binding kinetics impact ocular retention. Alongside these models we present analogous PDE models, addressing whether the assumption that concentrations are homogeneous across anatomical regions, as implicit in ODE models, is appropriate for macromolecular PK/PD in the mammalian eye.
- Published
- 2018
12. In silico modelling of tumour-induced angiogenesis
- Author
-
Connor, Anthony J., Maini, Philip K., Byrne, Helen M., Cooper, Jonathan, Quaiser, Tom, and Shochat, Eliezer
- Subjects
616.99 ,Computer science (mathematics) ,Mathematical biology ,Partial differential equations ,Oncology ,Tumours ,Angiogenesis ,Cancer ,Computational modelling ,Mathematical modelling - Abstract
Angiogenesis, the process by which new vessels form from existing ones, is a key event in the development of a large and malignant vascularised tumour. A rapid expansion in in vivo and in vitro angiogenesis research in recent years has led to increased knowledge about the processes underlying angiogenesis and to promising steps forward in the development of anti-angiogenic therapies for the treatment of various cancers. However, substantial gaps in knowledge persist and the development of effective treatments remains a major challenge. In this thesis we study tumour-induced angiogenesis within the context of a highly controllable experimental environment: the cornea micropocket assay. Using a multidisciplinary approach that combines experiments, image processing and analysis, and mathematical and computational modelling, we aim to provide mechanistic insight into the action of two angiogenic factors which are known to play central roles during tumour-induced angiogenesis: vascular endothelial growth factor A (VEGF-A) and basic fibroblast growth factor (bFGF). Image analysis techniques are used to extract quantitative data, which are both spatially and temporally resolved, from experimental images. These data are then used to develop and parametrise mathematical models describing the evolution of the corneal vasculature in response to both VEGF-A and bFGF. The first models developed in this thesis are one-dimensional continuum models of angiogenesis in which VEGF-A and/or bFGF are released from a pellet implanted into a mouse cornea. We also use an object-oriented framework, designed to facilitate the re-use and extensibility of hybrid multiscale models of angiogenesis and vascular tumour growth, to develop a complementary three-dimensional hybrid model of the same system. The hybrid model incorporates a new non-local cell sensing model which facilitates the formation of well-perfused and functional vascular networks in three dimensions. The continuum models are used to assess the utility of the cornea micropocket assay as a quantitative assay for angiogenesis, to characterise proposed synergies between VEGF-A and bFGF, and to generate experimentally testable predictions regarding the effect of anti-VEGF-A therapies on bFGF-induced angiogenesis. Meanwhile, the hybrid model is used to provide context for the comparison that is drawn between the continuum models and the data, to study the relative distributions of perfused and unperfused vessels in the evolving neovasculature, and to investigate the impact of tip cell sensing dysregulation on the angiogenic response in the cornea. We have found that by exploiting a close link with quantitative data we have been able to extend the predictive and hypothesis-testing capabilities of our models. As such, this thesis demonstrates the potential for integrating mathematical modelling with image analysis techniques to increase insight into the mechanisms underlying angiogenesis.
- Published
- 2014
13. A target-cell limited model can reproduce influenza infection dynamics in hosts with differing immune responses.
- Author
-
Sachak-Patwa, Rahil, Lafferty, Erin I., Schmit, Claude J., Thompson, Robin N., and Byrne, Helen M.
- Subjects
- *
IMMUNE response , *INFLUENZA , *VIRAL load , *ORDINARY differential equations , *PLANT viruses - Abstract
We consider a hierarchy of ordinary differential equation models that describe the within-host viral kinetics of influenza infections: the IR model explicitly accounts for an immune response to the virus, while the simpler, target-cell limited TEIV and TV models do not. We show that when the IR model is fitted to pooled experimental murine data of the viral load, fraction of dead cells, and immune response levels, its parameters values can be determined. However, if, as is common, only viral load data are available, we can estimate parameters of the TEIV and TV models but not the IR model. These results are substantiated by a structural and practical identifiability analysis. We then use the IR model to generate synthetic data representing infections in hosts whose immune responses differ. We fit the TV model to these synthetic datasets and show that it can reproduce the characteristic exponential increase and decay of viral load generated by the IR model. Furthermore, the values of the fitted parameters of the TV model can be mapped from the immune response parameters in the IR model. We conclude that, if only viral load data are available, a simple target-cell limited model can reproduce influenza infection dynamics and distinguish between hosts with differing immune responses. • Target-cell limited model parameters can be estimated from viral load data. • Immune response data are needed to estimate parameters of immune response model. • The target-cell model can describe viral load in immunologically different hosts. • The target-cell limited model may be preferred when making viral load forecasts. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.