1. Processing TIRF Microscopy Images to Characterize the Dynamics and Morphology of Bacterial Actin-Like Assemblies
- Author
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Cyrille Billaudeau, Arnaud Chastanet, Rut Carballido-López, MICrobiologie de l'ALImentation au Service de la Santé (MICALIS), and AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
- Subjects
Kymograph ,0303 health sciences ,Materials science ,Total internal reflection fluorescence microscope ,Single-particle tracking (SPT) ,Orientation (computer vision) ,2D anisotropic Gaussian fitting ,030303 biophysics ,Dynamics (mechanics) ,MreB ,Image analysis ,Mean squared displacement ,03 medical and health sciences ,[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology ,Microscopy ,Biophysics ,Automated dynamic classification ,Mean squared displacement (MSD) ,Actin ,030304 developmental biology - Abstract
Total internal reflection fluorescence (TIRF) microscopy allows the visualization of the dynamic membrane-associated actin-like MreB filaments in live bacterial cells with high temporal resolution. This chapter describes computerized analysis methods to quantitatively characterize the dynamics and morphological properties of MreB assemblies. These include how to (1) segment bacterial cells, (2) perform single-particle tracking (SPT) of MreB filamentous structures, (3) classify their dynamic modes using mean squared displacement (MSD) analysis, and (4) measure their dimensions and orientation.
- Published
- 2020
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