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Camera traps became the main observational method of a myriad of species over large areas. Data sets from camera traps can be used to describe the patterns and monitor the occupancy, abundance, and richness of wildlife, essential information for conservation in times of rapid climate and land-cover changes. Habitat loss and poaching are responsible for historical population losses of mammals in the Atlantic Forest biodiversity hotspot, especially for medium to large-sized species. Here we present a data set from camera trap surveys of medium to large-sized native mammals (>1 kg) across the Atlantic Forest. We compiled data from 5380 ground-level camera trap deployments in 3046 locations, from 2004 to 2020, resulting in 43,068 records of 58 species. These data add to existing data sets of mammals in the Atlantic Forest by including dates of camera operation needed for analyses dealing with imperfect detection. We also included, when available, information on important predictors of detection, namely the camera brand and model, use of bait, and obstruction of camera viewshed that can be measured from example pictures at each camera location. Besides its application in studies on the patterns and mechanisms behind occupancy, relative abundance, richness, and detection, the data set presented here can be used to study species' daily activity patterns, activity levels, and spatiotemporal interactions between species. Moreover, data can be used combined with other data sources in the multiple and expanding uses of integrated population modeling. An R script is available to view summaries of the data set. We expect that this data set will be used to advance the knowledge of mammal assemblages and to inform evidence-based solutions for the conservation of the Atlantic Forest. The data are not copyright restricted; please cite this paper when using the data., (© 2024 The Ecological Society of America.)

Biological invasion is one of the main threats to native biodiversity. For a species to become invasive, it must be voluntarily or involuntarily introduced by humans into a nonnative habitat. Mammals were among first taxa to be introduced worldwide for game, meat, and labor, yet the number of species introduced in the Neotropics remains unknown. In this data set, we make available occurrence and abundance data on mammal species that (1) transposed a geographical barrier and (2) were voluntarily or involuntarily introduced by humans into the Neotropics. Our data set is composed of 73,738 historical and current georeferenced records on alien mammal species of which around 96% correspond to occurrence data on 77 species belonging to eight orders and 26 families. Data cover 26 continental countries in the Neotropics, ranging from Mexico and its frontier regions (southern Florida and coastal-central Florida in the southeast United States) to Argentina, Paraguay, Chile, and Uruguay, and the 13 countries of Caribbean islands. Our data set also includes neotropical species (e.g., Callithrix sp., Myocastor coypus, Nasua nasua) considered alien in particular areas of Neotropics. The most numerous species in terms of records are from Bos sp. (n = 37,782), Sus scrofa (n = 6,730), and Canis familiaris (n = 10,084); 17 species were represented by only one record (e.g., Syncerus caffer, Cervus timorensis, Cervus unicolor, Canis latrans). Primates have the highest number of species in the data set (n = 20 species), partly because of uncertainties regarding taxonomic identification of the genera Callithrix, which includes the species Callithrix aurita, Callithrix flaviceps, Callithrix geoffroyi, Callithrix jacchus, Callithrix kuhlii, Callithrix penicillata, and their hybrids. This unique data set will be a valuable source of information on invasion risk assessments, biodiversity redistribution and conservation-related research. There are no copyright restrictions. Please cite this data paper when using the data in publications. We also request that researchers and teachers inform us on how they are using the data., (© 2020 The Authors. Ecology © 2020 The Ecological Society of America.)

Understanding spatiotemporal patterns of species distributions and their determinants is paramount in ecology. Here, we explore the relationship between the diversity of surviving mammals and two of the main alimentary resources (araucaria seeds and feijoa fruits) across the Araucaria Forest (FOM) in South America. First, we investigated the influence of landscape and environment on the species distribution and pulse of forest productivity. Then, we evaluated how these spatiotemporal pulses in resource availability influence the mammalian diversity. We analyzed the data via diversity descriptors, Morisita index and multiple regressions. Our findings highlighted that climate, tree density, and other environmental variables explained the pulses of productivity. Mammalian diversity of first-order consumers mammals-all those immediately feeding on seeds and fruits-was partially related to resource pulses. Our results revealed that the pulses of forest resources can influence mammal diversity over the years, including delayed responses and asynchronous oscillations. The integrity of vegetal elements of the FOM is key to maintain several mammal-mediated ecological processes. Maintaining the viability of tree populations, encouraging the sustainable use of non-timber resources, and promoting the conservation of the mammalian fauna, which is undergoing an unprecedented diversity crisis worldwide, can help to preserve the remaining ecological processes., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier B.V. All rights reserved.)

Mammals represent the largest-bodied elements of the world's surviving megafauna and provide several key ecosystems services, yet their populations are often under steep decline throughout the tropics. Anthropogenic defaunation is one the most important contemporary threats to modern mammal faunas. Although the Atlantic Forest biome of South America shows several clear signs of defaunation, the extent to which this biome has lost its mammal fauna remains poorly understood. Here, we collate and analyze a comprehensive body of secondary data to quantitatively assess the spatial patterns of defaunation of all medium- to large-bodied Atlantic Forest mammals which were then classed by morpho-ecological traits. We used a Defaunation Index, which was scaled-up to the entire biome using kriging interpolation, to examine the integrity of site-specific mammal faunas. We further use environmental and socioeconomic predictors to explain the drivers of defaunation. Our results show high levels of defaunation (>0.5) for most of the Atlantic Forest. Apex predators, other carnivores, large-bodied mammals and large herbivores were among the most defaunated functional groups. Remaining native vegetation cover, forest fragment size, and the largest neighboring forest remnant were the main negative predictors of defaunation. We conclude that medium- to large-bodied Atlantic Forest mammals are under high levels of threat due to historical population losses that continue today. A conservation action plan thus becomes imperative to prevent this biome from becoming an even "emptier forest", severely compromising patterns of diversity, ecological processes and ecosystem functioning., Competing Interests: The authors have declared that no competing interests exist.

Our understanding of mammal ecology has always been hindered by the difficulties of observing species in closed tropical forests. Camera trapping has become a major advance for monitoring terrestrial mammals in biodiversity rich ecosystems. Here we compiled one of the largest datasets of inventories of terrestrial mammal communities for the Neotropical region based on camera trapping studies. The dataset comprises 170 surveys of medium to large terrestrial mammals using camera traps conducted in 144 areas by 74 studies, covering six vegetation types of tropical and subtropical Atlantic Forest of South America (Brazil and Argentina), and present data on species composition and richness. The complete dataset comprises 53,438 independent records of 83 species of mammals, includes 10 species of marsupials, 15 rodents, 20 carnivores, eight ungulates and six armadillos. Species richness averaged 13 species (±6.07 SD) per site. Only six species occurred in more than 50% of the sites: the domestic dog Canis familiaris, crab-eating fox Cerdocyon thous, tayra Eira barbara, south American coati Nasua nasua, crab-eating raccoon Procyon cancrivorus and the nine-banded armadillo Dasypus novemcinctus. The information contained in this dataset can be used to understand macroecological patterns of biodiversity, community, and population structure, but also to evaluate the ecological consequences of fragmentation, defaunation, and trophic interactions., (© 2017 by the Ecological Society of America.)

Past and contemporary human actions are causing numerous changes in patterns and processes at various ecosystem scales and trophic levels, including unintended downstream changes, such as species interactions. In its native range Acca sellowiana (Feijoa) combines some characteristics of human interactions: incipient domestication, restricted to subtropical Atlantic Forest highlands, associated with the threatened conifer Araucaria angustifolia (Araucaria), within a domesticated landscape with anthropogenic forest patches, and provides fruit at a time of resource shortage (Araucaria seeds—pinhão). We quantify the trophic relationships between Feijoa and vertebrates, and evaluate the influences on interactions caused by environmental variations, Feijoa domestication evidences, spatial distance and fruit availability. In four sites within protected areas, we selected 28 focal individuals of Feijoa (seven/site) and collected three temporal replicas between 2015 and 2016, when we measured productivity and frugivory via 45-second videos taken with camera traps. Using ecological network, rarefaction curves and variation partitioning analyses, we evaluate the frugivory network topology, the spatiotemporal structure of communities in relation to fruit availability and the influence of predictive variables on frugivory. We found a large spatiotemporal variation in productivity of Feijoa and that 20 species consumed Feijoa fruits, with a species degree of 2.8 (±5.7) and average Feijoa degree of 14.4 (±10.1), in a modular network with intermediary connectance. Rarefaction curves showed that richness and the independent records are congruent with the fruit amount. Variation partitioning showed that, for the focal individuals, canopy area, green coverage, patch size and distance to water influenced frugivory, and the Feijoa domestication influenced significantly the mammalian frugivory. Feijoa is an important resource that provides food during the time of year when Pinhão is absent, and attracts frugivores, maintain the residual diversity of vertebrates contributing to the structure of communities in highlands. Our insights allowed us to evaluate the magnitude of the interactions between vertebrates and an incipient domesticated tree, in a cultural landscape and highly threatened environment, under a basal foodweb approach with implications for bottom-up and top-down forces. The results contribute to understanding animal-plant relationships, including concepts that can be replicated for other sessile prey and mobile predators in any region or habitat under different gradients of management. Thus, this work shows how human actions can change not only patterns of distribution and abundance but also the diversity and direction of interspecific interactions among species. [ABSTRACT FROM AUTHOR]

Biodiversity inventories contain important information about species richness, community structure, and composition, and are the first step in developing any conservation and mitigation strategies. The Atlantic Forest of South America is home to around 334 species of small‐, medium‐, and large‐sized mammals, and is currently restricted to less than 12% of its original cover. Here, we present the ATLANTIC MAMMALS, an open data set on information on medium‐ and large‐sized mammal assemblages in the Atlantic Forest of Brazil, Paraguay, and Argentina. A total of 129 studies were compiled, including published and in press peer‐reviewed papers, book chapters, theses and unpublished data. We mapped 244 assemblages, eight orders, 63 genera, and 94 species (24 of which are classified as threatened by the IUCN Red List) distributed in 128 protected and 116 unprotected areas. Species richness of the mammalian assemblages varied from 1 to 39 species (mean 15). The most recorded species in the entire biome was Dasypus novemcinctus, followed by Cerdocyon thous and Procyon cancrivorous. These data can be useful in support of macroecological studies and conservation planning strategies. Please cite this data paper when the data are used in publications. We also request that researchers and teachers inform us of how they are using the data. [ABSTRACT FROM AUTHOR]

• The quintessential plant of the Brazilian highlands — Araucaria (pinhão) — is paramount to vertebrates. • Pinhão exhibit low temporal redundancy, low consumer specificity, high reliability and abundance. • Araucaria behave as a keystone plant resource in the subtropical Atlantic Forest. Ecological attributes enable the identification of Keystone Plant Resources (KPRs), including their community-wide contribution to vertebrate consumers, which are often highly threatened in terrestrial ecosystems. KPRs have been defined by intersecting four ecological attributes that influence local communities of vertebrate frugivores: temporal redundancy (TR); degree of consumer specificity (CS); reliability (RR); and resource abundance (RA). The conifer Araucaria angustifolia (Bert.) O. Kuntze (Araucaria) is the main arborescent component of Araucaria Forests, within the subtropical Atlantic Forest of South America. The large Araucaria seeds (pinhão) are heavily consumed by local faunas, and consequently could be automatically defined as a KPR. However, no previous studies have conceptually assessed the pinhão as a KPR based on their ecological attributes and trophic interactions with vertebrates. Using empirical data and a comprehensive literature review, we examine the degree to which Araucaria trees can be formally defined as a KPR within the subtropical Atlantic Forest. Our results show for the first time that Araucaria is a KPR according to both its ecological attributes and community-wide importance. Araucaria cones exhibited low temporal redundancy, low consumer specificity, high resource reliability and high resource abundance, structuring the associated vertebrate consumers spatiotemporally. Our insights contribute to understanding the implications of historical Araucaria population declines through logging and deforestation, as well as ongoing vertebrate defaunation. Both of these processes can lead to changes in baseline ecological process (e.g. seed dispersal versus seed predation), forest regeneration, community reassembly, and potential evolutionary consequences such as seed downsizing. [ABSTRACT FROM AUTHOR]

Mammals play innumerous ecological functions in terrestrial ecosystems and are in decline in the Atlantic Forest. Using a biogeography approach with tools to analyze metacommunities, this study aimed to understand how mammal diversity would vary spatiotemporally across the Atlantic Forest. Secondary data about mammal communities was obtained using search engines. A nestedness analysis and spatial autocorrelations were used to evaluate the spatial patterns of richness. Metacommunity models were used based on species-neutral diversity to measure partitioning and estimate and compare diversity at different spatial and temporal scales, and regression models were made to evaluate the diversity variation obtained in relation to biogeographical predictors. The richness of mammals had intermediary nestedness and a spatial autocorrelation. We obtained high beta diversity for the entire Atlantic Forest, which was similar to simulated values and decreased at smaller spatial and temporal scales. The diversity of medium- to large-bodied mammals along the Atlantic Forest is composed of a nested summary of local to regional diversities, yet the tropical region was very important to the composition of the overall diversity. The different multiscale approaches and results may contribute to better understanding the diversity of medium- to large-bodied mammal communities and how they vary in the Atlantic Forest. Both the neutral paradigm and other metacommunity paradigms have complementary strengths in species diversity at several scales. We conclude that conservation strategies should consider all scales in the Atlantic Forest, because the diversity of mammals is dependent both the local and regional pool of mammals. Some of the most important standing issues are to find out whether dispersal across regional landscapes occurs for most species and, if it does, to ensure that this is maintained or increased, to maintain species diversity and ecological processes. [ABSTRACT FROM AUTHOR]