1. Functional precision medicine identifies new therapeutic candidates for medulloblastoma
- Author
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Eliezer M. Van Allen, Terence C. Wong, Jessica M. Rusert, Susanne Gröbner, Silvia K. Tacheva-Grigorova, Kristiina Vuori, Jill P. Mesirov, Robert J. Wechsler-Reya, Darren Finlay, Jonas Ecker, Denise M. Malicki, Shareef Nahas, David Dimmock, Brendan Reardon, James M. Olson, Till Milde, Sameerah Wahab, Matija Snuderl, Jonathan Serrano, Mari Kogiso, Huriye Seker-Cin, Patricia Baxter, Stefan M. Pfister, Michael J. Levy, Yoon Jae Cho, Jacob J. Henderson, Yuchen Du, James Jensen, Alexandra Garancher, Edwin F. Juarez, Michael E. Berens, Iris Reyes, Sebastian Brabetz, Xiao-Nan Li, Marcel Kool, Yoko T. Udaka, Pablo Tamayo, Lianne Q. Chau, John R. Crawford, and Lin Qi
- Subjects
0301 basic medicine ,Oncology ,Male ,Cancer Research ,Disease ,Transcriptome ,Mice ,0302 clinical medicine ,Mice, Inbred NOD ,Medicine ,Precision Medicine ,Child ,Exome sequencing ,Cancer ,media_common ,Pediatric ,Tumor ,Single Nucleotide ,Genomics ,Gene Expression Regulation, Neoplastic ,Pharmaceutical Preparations ,5.1 Pharmaceuticals ,030220 oncology & carcinogenesis ,Dactinomycin ,Sarcoma ,Development of treatments and therapeutic interventions ,Biotechnology ,Drug ,Pediatric Research Initiative ,medicine.medical_specialty ,Pediatric Cancer ,media_common.quotation_subject ,Oncology and Carcinogenesis ,Antineoplastic Agents ,Polymorphism, Single Nucleotide ,Article ,Cell Line ,03 medical and health sciences ,Rare Diseases ,Internal medicine ,Cell Line, Tumor ,Exome Sequencing ,Genetics ,Animals ,Humans ,Genetic Testing ,Oncology & Carcinogenesis ,Polymorphism ,Cerebellar Neoplasms ,Medulloblastoma ,Neoplastic ,business.industry ,Human Genome ,Neurosciences ,Precision medicine ,medicine.disease ,Xenograft Model Antitumor Assays ,Brain Disorders ,High-Throughput Screening Assays ,Brain Cancer ,Gene expression profiling ,Orphan Drug ,Good Health and Well Being ,030104 developmental biology ,Gene Expression Regulation ,Mutation ,Inbred NOD ,Generic health relevance ,business - Abstract
Medulloblastoma is among the most common malignant brain tumors in children. Recent studies have identified at least four subgroups of the disease that differ in terms of molecular characteristics and patient outcomes. Despite this heterogeneity, most patients with medulloblastoma receive similar therapies, including surgery, radiation, and intensive chemotherapy. Although these treatments prolong survival, many patients still die from the disease and survivors suffer severe long-term side effects from therapy. We hypothesize that each patient with medulloblastoma is sensitive to different therapies and that tailoring therapy based on the molecular and cellular characteristics of patients' tumors will improve outcomes. To test this, we assembled a panel of orthotopic patient-derived xenografts (PDX) and subjected them to DNA sequencing, gene expression profiling, and high-throughput drug screening. Analysis of DNA sequencing revealed that most medulloblastomas do not have actionable mutations that point to effective therapies. In contrast, gene expression and drug response data provided valuable information about potential therapies for every tumor. For example, drug screening demonstrated that actinomycin D, which is used for treatment of sarcoma but rarely for medulloblastoma, was active against PDXs representing Group 3 medulloblastoma, the most aggressive form of the disease. Functional analysis of tumor cells was successfully used in a clinical setting to identify more treatment options than sequencing alone. These studies suggest that it should be possible to move away from a one-size-fits-all approach and begin to treat each patient with therapies that are effective against their specific tumor. Significance: These findings show that high-throughput drug screening identifies therapies for medulloblastoma that cannot be predicted by genomic or transcriptomic analysis.
- Published
- 2020