1. Sorting biologic subtypes of primary CNS lymphoma
- Author
-
Mark Roschewski and James D. Phelan
- Subjects
0301 basic medicine ,Adult ,Male ,Epstein-Barr Virus Infections ,Herpesvirus 4, Human ,Lymphoma ,Immunology ,Central nervous system ,Biochemistry ,Virus ,Central Nervous System Neoplasms ,03 medical and health sciences ,0302 clinical medicine ,Primary CNS Lymphoma ,hemic and lymphatic diseases ,Gene expression ,Immune Tolerance ,Tumor Microenvironment ,Medicine ,Humans ,Aged ,Aged, 80 and over ,business.industry ,Primary central nervous system lymphoma ,Cell Biology ,Hematology ,Middle Aged ,medicine.disease ,030104 developmental biology ,medicine.anatomical_structure ,Mutation ,Cancer research ,Female ,business ,Transcriptome ,BLOOD Commentary ,030215 immunology - Abstract
Primary central nervous system lymphoma (PCNSL) is confined to the brain, eyes, and cerebrospinal fluid without evidence of systemic spread. Rarely, PCNSL occurs in the context of immunosuppression (eg, posttransplant lymphoproliferative disorders or HIV [AIDS-related PCNSL]). These cases are poorly characterized, have dismal outcome, and are typically Epstein-Barr virus (EBV)-associated (ie, tissue-positive). We used targeted sequencing and digital multiplex gene expression to compare the genetic landscape and tumor microenvironment (TME) of 91 PCNSL tissues all with diffuse large B-cell lymphoma histology. Forty-seven were EBV tissue-negative: 45 EBV- HIV- PCNSL and 2 EBV- HIV+ PCNSL; and 44 were EBV tissue-positive: 23 EBV+ HIV+ PCNSL and 21 EBV+ HIV- PCNSL. As with prior studies, EBV- HIV- PCNSL had frequent MYD88, CD79B, and PIM1 mutations, and enrichment for the activated B-cell (ABC) cell-of-origin subtype. In contrast, these mutations were absent in all EBV tissue-positive cases and ABC frequency was low. Furthermore, copy number loss in HLA class I/II and antigen-presenting/processing genes were rarely observed, indicating retained antigen presentation. To counter this, EBV+ HIV- PCNSL had a tolerogenic TME with elevated macrophage and immune-checkpoint gene expression, whereas AIDS-related PCNSL had low CD4 gene counts. EBV-associated PCNSL in the immunosuppressed is immunobiologically distinct from EBV- HIV- PCNSL, and, despite expressing an immunogenic virus, retains the ability to present EBV antigens. Results provide a framework for targeted treatment.
- Published
- 2021