1. Counteracting lineage-specific transcription factor network finely tunes lung adeno-to-squamous transdifferentiation through remodeling tumor immune microenvironment.
- Author
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Tang, Shijie, Xue, Yun, Qin, Zhen, Fang, Zhaoyuan, Sun, Yihua, Yuan, Chongzhe, Pan, Yunjian, Zhao, Yue, Tong, Xinyuan, Zhang, Jian, Huang, Hsinyi, Chen, Yuting, Hu, Liang, Huang, Dasong, Wang, Ruiqi, Zou, Weiguo, Li, Yuan, Thomas, Roman K, Ventura, Andrea, and Wong, Kwok-Kin
- Subjects
TRANSCRIPTION factors ,TUMOR microenvironment ,LUNGS ,LUNG tumors ,TRANSCRIPTOMES ,NEUTROPHILS - Abstract
Human lung adenosquamous cell carcinoma (LUAS), containing both adenomatous and squamous pathologies, harbors strong plasticity and is significantly associated with poor prognosis. We established an up-to-date comprehensive genomic and transcriptomic landscape of LUAS in 109 Chinese specimens and demonstrated LUAS development via adeno-to-squamous transdifferentiation. Unsupervised transcriptomic clustering and dynamic network biomarker analysis identified an inflammatory subtype as the critical transition stage during LUAS development. Dynamic dysregulation of the counteracting lineage-specific transcription factors (TFs), containing adenomatous TFs NKX2-1 and FOXA2, and squamous TFs TP63 and SOX2, finely tuned the lineage transition via promoting CXCL3/5-mediated neutrophil infiltration. Genomic clustering identified the most malignant subtype featured with STK11-inactivation, and targeting LSD1 through genetic deletion or pharmacological inhibition almost eradicated STK11-deficient lung tumors. These data collectively uncover the comprehensive molecular landscape, oncogenic driver spectrum and therapeutic vulnerability of Chinese LUAS. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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