1. Spatial and Temporal Phylogeny of Border Disease Virus in Pyrenean Chamois (Rupicapra p. pyrenaica)
- Author
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Santiago Lavín, Oscar Cabezón, Serena Cavallero, Rosa Rosell, Luca Rossi, Laura Fernández-Sirera, Paolo Lanfranchi, Carla Veo, Gianguglielmo Zehender, Ignasi Marco, Camilla Luzzago, and Erika Ebranati
- Subjects
Genetics and Molecular Biology (all) ,0301 basic medicine ,Veterinary medicine ,Range (biology) ,viral diarrhaea virus ,wild ruminants ,pestivirus ,spain ,sheep ,identification ,infection ,pigs ,population ,outbreak ,lcsh:Medicine ,Biochemistry ,Disease Outbreaks ,Geographical Locations ,Border disease virus ,Database and Informatics Methods ,Rupicapra pyrenaica ,Viral ,lcsh:Science ,5' Untranslated Regions ,Animals ,Base Sequence ,Bayes Theorem ,Border Disease ,Phylogeny ,Phylogeography ,RNA, Viral ,Rupicapra ,Sequence Analysis, RNA ,Sheep ,Sheep Diseases ,Biochemistry, Genetics and Molecular Biology (all) ,Agricultural and Biological Sciences (all) ,Mammals ,education.field_of_study ,Multidisciplinary ,Phylogenetic analysis ,Geography ,biology ,Phylogenetic tree ,Sequence analysis ,Phylogenetic Analysis ,Agriculture ,Ruminants ,Europe ,Domestic animals ,Biogeography ,Vertebrates ,Sequence databases ,Sequence Analysis ,Research Article ,Livestock ,Bioinformatics ,Animal Types ,Population ,Sequence Databases ,Zoology ,Research and Analysis Methods ,03 medical and health sciences ,Andorra ,Genetics ,Domestic Animals ,Molecular Biology Techniques ,education ,Molecular Biology ,Evolutionary Biology ,Molecular Biology Assays and Analysis Techniques ,Population Biology ,Ecology and Environmental Sciences ,lcsh:R ,Organisms ,Biology and Life Sciences ,biology.organism_classification ,Biological Databases ,030104 developmental biology ,Spain ,People and Places ,Amniotes ,Earth Sciences ,RNA ,lcsh:Q ,Population Genetics - Abstract
Altres ajuts: PRIN/2010P7LFW4 Border disease virus (BDV) affects a wide range of ruminants worldwide, mainly domestic sheep and goat. Since 2001 several outbreaks of disease associated to BDV infection have been described in Pyrenean chamois (Rupicapra pyrenaica pyrenaica) in Spain, France and Andorra. In order to reconstruct the most probable places of origin and pathways of dispersion of BDV among Pyrenean chamois, a phylogenetic analysis of 95 BDV 5'untranslated sequences has been performed on chamois and domestic ungulates, including novel sequences and retrieved from public databases, using a Bayesian Markov Chain Monte Carlo method. Discrete and continuous space phylogeography have been applied on chamois sequences dataset, using centroid positions and latitude and longitude coordinates of the animals, respectively. The estimated mean evolutionary rate of BDV sequences was 2.9×10−3 subs/site/year (95% HPD: 1.5-4.6×10−3). All the Pyrenean chamois isolates clustered in a unique highly significant clade, that originated from BDV-4a ovine clade. The introduction from sheep (dated back to the early 90s) generated a founder effect on the chamois population and the most probable place of origin of Pyrenean chamois BDV was estimated at coordinates 42.42 N and 1.9 E. The pathways of virus dispersion showed two main routes: the first started on the early 90s of the past century with a westward direction and the second arise in Central Pyrenees. The virus spread westward for more than 125 km and southward for about 50km and the estimated epidemic diffusion rate was about 13.1 km/year (95% HPD 5.2-21.4 km/year). The strong spatial structure, with strains from a single locality segregating together in homogeneous groups, and the significant pathways of viral dispersion among the areas, allowed to reconstruct both events of infection in a single area and of migrations, occurring between neighboring areas.
- Published
- 2021