1. Analysis of the length polymorphisms in sequence-tagged-site sY1291 on Y chromosome in Vietnamese men of infertile couples
- Author
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Kien Trung Nguyen, Nhuan Thi Vu, Binh Luong Cao, Nguyen Thi Tai Cao, Thiet Minh Trinh, Vieng Chung Nguyen, Lien Thi Bich Trinh, Tien Thi Thuy Lam, Ngoc Thi Bich Nguyen, and Tra Ngoc Dang
- Subjects
Adult ,Male ,0301 basic medicine ,Adolescent ,lcsh:Medicine ,Biology ,Y chromosome ,Polymerase Chain Reaction ,Article ,DNA sequencing ,law.invention ,Sequence-tagged site ,Young Adult ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,law ,Polymorphism (computer science) ,Humans ,lcsh:Science ,Sex Chromosome Aberrations ,Polymerase chain reaction ,Azoospermia ,Sequence Tagged Sites ,Genetics ,Chromosomes, Human, Y ,Polymorphism, Genetic ,Multidisciplinary ,Base Sequence ,lcsh:R ,Oligospermia ,Middle Aged ,030104 developmental biology ,Vietnam ,chemistry ,Genetic markers ,lcsh:Q ,Primer (molecular biology) ,Thymine ,030217 neurology & neurosurgery ,DNA ,Microsatellite Repeats ,Reference genome - Abstract
This study aims to analyze the length polymorphisms in sequence-tagged-site (STS) sY1291 of the Y chromosome in Vietnamese men of infertile couples. All 322 DNA samples were amplified with the sY1291 primer by the quantitative fluorescent polymerase chain reaction (QF-PCR) assay. DNA sequencing technique was employed to evaluate the accuracy of QF-PCR results. The study showed 273 out of 322 DNA samples had the presence of STS sY1291, accounted for 84.78%. The QF-PCR results showed that there were various lengths in STS sY1291: 507 bp, 512 bp, 523 bp and 527 bp. The most prevalent length in STS sY1291 was 507 bp (87.5%), the others were 512 bp (4.8%), 523 bp (4.8%) and 527 bp (2.9%). We found that the observed length polymorphisms derived from differences in the number of mononucleotide Thymine (T) repeats in its structure. It stretched from 22 T to 39 T. DNA sequencing results identified that the number of mononucleotide T repeats causes these polymorphisms. However, the pair-wise alignment between the obtained and reference sequence was 77%. It can be seen that the length polymorphisms in STS sY1291 observed in QF-PCR results was accurate but it is still difficult to sequence fragments with mononucleotide repeats.
- Published
- 2019
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