1. Imaging effectiveness calculator for non-design microscope samples
- Author
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Philip R. Miller, Stephen M. Anthony, Ronen Polsky, and Jerilyn A. Timlin
- Subjects
Image formation ,Materials science ,Fabrication ,Microscope ,business.industry ,Image quality ,Strehl ratio ,Lab-on-a-chip ,01 natural sciences ,Encircled energy ,Atomic and Molecular Physics, and Optics ,law.invention ,010309 optics ,Optics ,law ,0103 physical sciences ,Electrical and Electronic Engineering ,business ,Engineering (miscellaneous) ,Microfabrication - Abstract
When attempting to integrate single-molecule fluorescence microscopy with microfabricated devices such as microfluidic channels, fabrication constraints may prevent using traditional coverslips. Instead, the fabricated devices may require imaging through material with a different thickness or index of refraction. Altering either can easily reduce the quality of the image formation (measured by the Strehl ratio) by a factor of 2 or more, reducing the signal-to-noise ratio accordingly. In such cases, successful detection of single-molecule fluorescence may prove difficult or impossible. Here we provide software to calculate the effect of non-design materials upon the Strehl ratio or ensquared energy and explore the impact of common materials used in microfabrication.
- Published
- 2019