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Over the last decade, an increasing number of studies have used lake sediment DNA to trace past landscape changes, agricultural activities or human presence. However, the processes responsible for lake sediment formation and sediment properties might affect DNA records via taphonomic and analytical processes. It is crucial to understand these processes to ensure reliable interpretations for "palaeo" studies. Here, we combined plant and mammal DNA metabarcoding analyses with sedimentological and geochemical analyses from three lake-catchment systems that are characterised by different erosion dynamics. The new insights derived from this approach elucidate and assess issues relating to DNA sources and transfer processes. The sources of eroded materials strongly affect the "catchment-DNA" concentration in the sediments. For instance, erosion of upper organic and organo-mineral soil horizons provides a higher amount of plant DNA in lake sediments than deep horizons, bare soils or glacial flours. Moreover, high erosion rates, along with a well-developed hydrographic network, are proposed as factors positively affecting the representation of the catchment flora. The development of open and agricultural landscapes, which favour the erosion, could thus bias the reconstructed landscape trajectory but help the record of these human activities. Regarding domestic animals, pastoral practices and animal behaviour might affect their DNA record because they control the type of source of DNA ("point" vs. "diffuse").

Paleoenvironmental studies are essential to understand biodiversity changes over long timescales and to assess the relative importance of anthropogenic and environmental factors. Sedimentary ancient DNA (sedaDNA) is an emerging tool in the field of paleoecology and has proven to be a complementary approach to the use of pollen and macroremains for investigating past community changes. SedaDNA-based reconstructions of ancient environments often rely on indicator taxa or expert knowledge, but quantitative ecological analyses might provide more objective information. Here, we analysed sedaDNA to investigate plant community trajectories in the catchment of a high-elevation lake in the Alps over the last 6400 years. We combined data on past and present plant species assemblages along with sedimentological and geochemical records to assess the relative impact of human activities through pastoralism, and abiotic factors (temperature and soil evolution). Over the last 6400 years, we identified significant variation in plant communities, mostly related to soil evolution and pastoral activities. An abrupt vegetational change corresponding to the establishment of an agropastoral landscape was detected during the Late Holocene, approximately 4500 years ago, with the replacement of mountain forests and tall-herb communities by heathlands and grazed lands. Our results highlight the importance of anthropogenic activities in mountain areas for the long-term evolution of local plant assemblages. SedaDNA data, associated with other paleoenvironmental proxies and present plant assemblages, appear to be a relevant tool for reconstruction of plant cover history. Their integration, in conjunction with classical tools, offers interesting perspectives for a better understanding of long-term ecosystem dynamics under the influence of human-induced and environmental drivers., (© 2015 John Wiley & Sons Ltd.)

A high-resolution sedimentological study of Lake Bourget was conducted to reconstruct the flood frequency and intensity (or magnitude) in the area over the last 350 years. Particular emphasis was placed on investigating the spatio-temporal distribution of flood deposits in this large lake basin. The thicknesses of deposits resulting from 30 flood events of the Rhône River were collected over a set of 24 short sediment cores. Deposit thicknesses were compared with instrumental data for the Rhône River discharge for the period from 1853 to 2010. The results show that flood frequency and intensity cannot be reliably reconstructed from a single core because of the inhomogeneous flood-deposit geometry in such a large lake. From all documented flood-deposit thicknesses, volumes of sediment brought into the lake during each flood event were computed through a Kriging procedure and compared with the historical instrumental data. The results show, in this study, that reconstructed sediment volumes are well correlated to maximal flood discharges. This significant correlation suggests that the increase of embankment and dam settlements on the Rhône River during the last 150 years has not significantly affected the transport of the smallest sediment fraction during major flood events. Hence, assessment of the flood-sediment volumes deposited in the large Lake Bourget is the only way to reliably reconstruct the flood frequency and intensity. [ABSTRACT FROM AUTHOR]