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Abstract Background The European flood that occurred between July 13th and 16th 2021, was a natural disaster that caused significant damage in Central European countries, including Germany, Netherlands, Belgium, and Luxembourg. This disaster resulted in the highest number of fatalities from a natural disaster in Germany during the twenty-first century, with over 180 people losing their lives and causing damages exceeding 30 bn€. The flood caused severe destruction in small mountainous river systems such as the Vicht and Inde rivers, particularly in the German state of North Rhine-Westphalia. In addition, the flood caused a significant release of pollutants, including old burdens from the former mining area of Stolberg. Results To assess the extent of pollution caused by the flood in the affected floodplains and urban areas, this study was conducted to inventorize organic contaminants identified through a non-target screening in water and sediment samples taken immediately after the disastrous flood event. In total, 56 individual contaminants were identified from the water samples, including substances derived from urban effluents, such as personal care products, cosmetics, odors, technical additives, pharmaceuticals and surfactants. The analysis of sediment samples revealed different types of environmentally hazardous contaminants, such as petrogenics, urban effluent and wastewater indicators, chlorinated industrial compounds, and pesticides. This diverse range of pollutants and their broad dispersion across various environments in the catchment is attributed to the dynamic nature of the flood. Conclusion The inventory of identified organic contaminants raises long-term environmental concerns and potential health implications for the flood-affected Vicht–Inde region.