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The synthesis of zirconium MOFs with zeolite net is quite challenging due to the high connectivity of Zr6 clusters, which is far from tetrahedral connection, a requisite for zeolite net. In this work, we demonstrate a six‐membered ring (6MR) strategy through mimicking of mineral zeolites with mixed ditopic and tritopic carboxylate linkers. With this strategy, the ditopic linker cross‐links Zr6 clusters to form 4‐connected zeolite‐like nets, while the tritopic one is used to direct the formation of 6MR and simultaneously consumes extra coordination sites on the cluster. The feasibility of this strategy is shown by one zeolitic metal–organic framework (NNM‐5) and this strategy has also led to the synthesis of the other dia‐type zirconium MOF (NNM‐6). Interestingly, as the tritopic linker not only directs the formation of 6MR but also partitions 6MR into small segments, NNM‐5 with SOD topology shows a structural feature of small aperture and big cage, which has led to efficient separation of hexane isomers. With both exceptionally high n‐hexane uptake (65.9 cm3 g−1) and size‐exclusion selectivity, an exceptional separation capability is verified by breakthrough experiments. Calculation results demonstrate that the large difference of diffusion energy barrier due to the small aperture accounts for the underlying separation mechanism. [ABSTRACT FROM AUTHOR]