26 results on '"B. Cryan"'
Search Results
2. Vancomycin-resistant enterococci carriage in an acute Irish hospital
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Brigid Lucey, Gerard D. Corcoran, E. Whelton, Caoimhe Lynch, B. Cryan, B. O'Reilly, Shauna M. Keane, and Roy D. Sleator
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Male ,0301 basic medicine ,Enterococcus faecium ,030501 epidemiology ,Feces ,Prevalence ,Infection control ,Colonization ,Child ,Aged, 80 and over ,biology ,General Medicine ,Middle Aged ,Hospitals ,Infectious Diseases ,Child, Preschool ,Carrier State ,Cohort ,Vancomycin ,Female ,0305 other medical science ,medicine.drug ,Adult ,Microbiology (medical) ,medicine.medical_specialty ,Adolescent ,Genotype ,030106 microbiology ,Vancomycin-Resistant Enterococci ,Microbiology ,Young Adult ,03 medical and health sciences ,Antibiotic resistance ,Internal medicine ,medicine ,Humans ,Gram-Positive Bacterial Infections ,Aged ,Bacteriological Techniques ,Diagnostic Tests, Routine ,business.industry ,Infant, Newborn ,Infant ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,biology.organism_classification ,Cross-Sectional Studies ,Carriage ,business ,Ireland - Abstract
Summary Background Ireland has been shown to have the highest rate of vancomycin-resistant enterococci (VRE) in cases of bacteraemia in Europe, according to a report in 2014 from the European Antimicrobial Resistance Surveillance System Network. Aim To investigate the prevalence of VRE gut colonization in a cohort of patients in 2014 at Cork University Hospital (CUH) by performing a cross-sectional study using faecal samples submitted to the microbiology laboratory for routine investigation from both hospital inpatients and community-based patients. Methods Faeces were examined for VRE colonization using selective cultivation, antimicrobial susceptibility testing, and speciation using matrix-assisted laser desorption ionization time-of-flight mass spectrometry. All VRE isolates were evaluated by molecular means for resistance determinants, type, and Insertion Sequence 16 as an indicator of Clonal Complex 17 (CC17). Findings From the 350 specimens investigated, 67 (19.1%) specimens were positive for VRE [95% confidence interval (CI): 15.0–23.2]. The prevalence of VRE colonization among CUH patients tested in this study ( N = 194) was 31.4% (95% CI: 24.7–38.1). By contrast, the general practitioner patient samples ( N =29) showed a prevalence of 0%, whereas 22.2% of samples from other hospitals ( N =27) were positive for VRE. All isolates were Enterococcus faecium (VRE fm ) and were indicated to contain CC17, though with considerable heterogeneity among the isolates. Conclusion This high prevalence goes some way towards providing an explanation for the current high rates of VRE bacteraemia in Ireland, as well as highlighting the benefits of screening and enhanced infection control practices by all hospitals to control the high rates of VRE observed.
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- 2016
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3. Dissemination of clonally related multidrug-resistantKlebsiella pneumoniaein Ireland
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M. Gniadkowski, Dearbháile Morris, M. Corcoran, Victoria Buckley, C. E. Ludden, R. Izdebski, M. O'connor, B. Cryan, E. McGRATH, and Martin Cormican
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0301 basic medicine ,Klebsiella ,Nalidixic acid ,Epidemiology ,Klebsiella pneumoniae ,030106 microbiology ,Biology ,Cefpodoxime ,Meropenem ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Antibiotic resistance ,Drug Resistance, Multiple, Bacterial ,medicine ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,biology.organism_classification ,Anti-Bacterial Agents ,Electrophoresis, Gel, Pulsed-Field ,Klebsiella Infections ,Infectious Diseases ,chemistry ,Multilocus sequence typing ,Ireland ,Ertapenem ,medicine.drug - Abstract
SUMMARYIn October 2012, an outbreak of gentamicin-resistant, ciprofloxacin non-susceptible extended-spectrumβ-lactamase (ESBL)-producingKlebsiella pneumoniaeoccurred in a neonatal intensive care unit in Ireland. In order to determine whether the outbreak strain was more widely dispersed in the country, 137 isolates ofK. pneumoniaewith this resistance phenotype collected from 17 hospitals throughout Ireland between January 2011 and July 2013 were examined. ESBL production was confirmed phenotypically and all isolates were screened for susceptibility to 19 antimicrobial agents and for the presence of genes encodingblaTEM,blaSHV,blaOXA, andblaCTX-M; 22 isolates were also screened forblaKPC,blaNDM,blaVIM,blaIMPandblaOXA-48genes. All isolates harbouredblaSHVandblaCTX-Mand were resistant to ciprofloxacin, gentamicin, nalidixic acid, amoxicillin-clavulanate, and cefpodoxime; 15 were resistant to ertapenem, seven to meropenem and five isolates were confirmed as carbapenemase producers. Pulsed-field gel electrophoresis of all isolates identified 16 major clusters, with two clusters comprising 61% of the entire collection. Multilocus sequence typing of a subset of these isolates identified a novel type, ST1236, a single locus variant of ST48. Data suggest that two major clonal groups, ST1236/ST48 (CG43) and ST15/ST14 (CG15) have been circulating in Ireland since at least January 2011.
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- 2015
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4. Prevalence and characterization of enteric adenoviruses in the South of Ireland
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Grainne Lennon, O. Cashman, B. Cryan, Helen O’Shea, and K. Lane
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Sequence analysis ,Adenoviridae Infections ,Molecular Sequence Data ,Restriction Mapping ,Genome, Viral ,Biology ,medicine.disease_cause ,Polymerase Chain Reaction ,Genome ,Genetic analysis ,Rotavirus Infections ,law.invention ,Feces ,law ,Virology ,Rotavirus ,medicine ,Humans ,Amino Acid Sequence ,Typing ,Phylogeny ,Polymerase chain reaction ,Molecular Epidemiology ,Molecular epidemiology ,Adenoviruses, Human ,Hospitals ,Gastroenteritis ,Hypervariable region ,Infectious Diseases ,Capsid Proteins ,Ireland ,Sequence Alignment ,Sequence Analysis - Abstract
Enteric adenoviruses have been shown to be a substantial cause of pediatric gastroenteritis in various parts of the world, and are considered to be the second most common cause of viral gastroenteritis, next to rotavirus in young children. Genetic characterization of 95 adenovirus isolates obtained from patients with acute gastroenteritis between 2002 and 2007 from the southern regions of Ireland, were characterized by PCR analysis, restriction endonuclease (RE) analysis and sequencing analysis. All isolates were found to be of adenovirus type 41 origin. Genetic analysis of seven hypervariable regions (HVRs) located within the hexon gene has revealed a high level of amino acid sequence homology in samples over the course of this study, with a very close relationship to the D22 genome type. The D22 genome type has been detected in several other countries, thus suggesting Irish isolates have common genome types with other stains worldwide. This is the first such study undertaken in the south of Ireland, to type and genetically characterize adenoviral gastroenteritis isolates, and has revealed a high level of conservation within the isolated analyzed.
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- 2007
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5. Candidaemia in an Irish tertiary referral hospital: epidemiology and prognostic factors
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B. O'Reilly, B. Cryan, J. O'Leary, and T.W. Boo
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,Dermatology ,Tertiary referral hospital ,Catheterization ,Risk Factors ,Internal medicine ,Epidemiology ,Humans ,Medicine ,Child ,Candida albicans ,Aged ,Candida ,Retrospective Studies ,Cross Infection ,biology ,business.industry ,Incidence ,Incidence (epidemiology) ,Mortality rate ,Candidiasis ,Infant, Newborn ,Infant ,Retrospective cohort study ,General Medicine ,Odds ratio ,Middle Aged ,Prognosis ,biology.organism_classification ,Surgery ,Exact test ,Blood ,Infectious Diseases ,Child, Preschool ,Urinary Tract Infections ,Female ,business ,Fungemia ,Ireland - Abstract
There were two parts to this study. Part 1 evaluated the epidemiology of Candida bloodstream isolates within the Southern Health Board (SHB) of Ireland from 1992 to 2003 by retrospective surveillance of all such isolates of patients reported from SHB hospitals to our laboratory database during that period. Part 2 reviewed candidaemia cases occurring in Cork University Hospital (CUH) from 1999 to 2003 using surveillance of all positive blood culture isolates in CUH microbiology laboratory during the 5-year period. In part 1, 250 Candida bloodstream isolates were reported in the SHB over 12 years. There was a pattern of decreasing percentage of C. albicans with time. Whereas in part 2, 63 cases of candidaemia were identified in CUH from 1999 to 2003. Candida albicans constituted 50% of all isolates, while C. parapsilosis and C. glabrata accounted for 21.2% and 18.2% respectively. Average annual incidence rate was 0.48 episodes/1000 admissions and 0.70 episodes/10 000 patient-days. Vascular catheters were the commonest source of candidaemia (61.9%) followed by the urinary tract (12.7%). Risk factors included exposure to multiple antibiotics (75%); central vascular catheterization (73%); multiple colonization sites (71%); severe gastrointestinal (GI) dysfunction (54%) and acute renal failure (43%). Crude 7-day and 30-day mortality rates were 20.6% and 39.7% respectively. Logistic regression multivariate analysis identified the following to be independent predictors for mortality: age > or =65 years [odds ratio (OR) 7.2, P = 0.013]; severe GI dysfunction (OR 10.6, P = 0.01); acute renal failure (OR 7.6, P = 0.022); recent/concurrent bacteraemia (OR 5.2, P = 0.042); endotracheal intubation (OR 7.7, P = 0.014); while major surgery was associated with a better prognosis (OR 0.05, P = 0.002). Appropriate antifungal treatment was also found to be associated with survival (Fisher's exact test, P < 0.001). The epidemiology of Candida bloodstream isolates within our health board had changed over the years. Incidence and mortality of candidaemia were relatively high in our hospital. Dysfunction of major organ systems and recent bacteraemia were found to predict mortality.
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- 2005
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6. Molecular characterization of class 1 integrons from Irish thermophilic Campylobacter spp
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B. Cryan, Séamus Fanning, Brigid Lucey, Tom Buckley, and Fiona O'Halloran
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DNA, Bacterial ,Microbiology (medical) ,Salmonella ,Molecular Sequence Data ,medicine.disease_cause ,Integron ,Poultry ,Integrons ,Microbiology ,Plasmid ,Campylobacter Infections ,Escherichia coli ,medicine ,Animals ,Humans ,Pharmacology (medical) ,Pharmacology ,Genetics ,biology ,Reverse Transcriptase Polymerase Chain Reaction ,Campylobacter ,biology.organism_classification ,Nucleotidyltransferases ,Infectious Diseases ,Gene cassette ,Salmonella enterica ,Campylobacter coli ,biology.protein ,Ireland - Abstract
Objectives: In this study a large random collection (n = 378) of Irish thermophilic Campylobacter isolates were investigated for the presence of integrons, genetic elements associated with the dissemination of anti- microbial resistance. Methods: Purified genomic DNA from each isolate was analysed by PCR for the presence of class 1 inte- grons. Four gene cassette-associated amplicons were completely characterized. Results: Sixty-two of the isolates possessed a complete class 1 integron with a recombined gene cassette located within a 1.0 kb amplicon containing an aadA2 gene. This cassette was present in both Campylo- bacter jejuni and Campylobacter coli isolates and following sequence analysis was shown to be similar to sequences recently reported in Salmonella enterica Hadar and on an 85 kb plasmid conferring quinolone resistance in Escherichia coli. Conclusions: Aminoglycoside aadA2-encoding class 1 integrons were identified among unrelated Campy- lobacter spp. Amino acid sequence comparisons revealed identical structures in both Salmonella and E. coli. The presence of class 1 integrons in Campylobacter spp. may be significant should these organisms enter the food chain and especially when antimicrobial treatment for severe infections is being considered.
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- 2004
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7. Molecular epidemiology of cystic fibrosis-linked Burkholderia cepacia complex isolates from three national referral centres in Ireland
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Séamus Fanning, Brigid Lucey, B. Cryan, John E. Moore, J.J. Collins, D. Crowley, G. Buckley, M. Daly, P. Shine, and P.G. Murphy
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Cystic Fibrosis ,Molecular Sequence Data ,Microbial Sensitivity Tests ,Burkholderia cepacia ,Integron ,DNA, Ribosomal ,Applied Microbiology and Biotechnology ,HaeIII ,Microbiology ,law.invention ,Bacterial Proteins ,law ,RNA, Ribosomal, 16S ,Drug Resistance, Bacterial ,medicine ,Humans ,Amino Acid Sequence ,Referral and Consultation ,Polymerase chain reaction ,Molecular Epidemiology ,biology ,Molecular epidemiology ,Genomovar ,Burkholderia Infections ,General Medicine ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Anti-Bacterial Agents ,Burkholderia cepacia complex ,Burkholderia ,biology.protein ,bacteria ,Restriction fragment length polymorphism ,Ireland ,Polymorphism, Restriction Fragment Length ,Biotechnology ,medicine.drug - Abstract
Burkholderia cepacia is a Gram-negative bacterium associated with increasing morbidity and mortality and is readily transmitted among infected cystic fibrosis (CF) patients. The B. cepacia complex consists of five distinct subgroups, termed genomovars. A collection of 17 presumptive B. cepacia isolates, obtained from three national CF referral centres located in different geographical regions in Ireland, was studied. The aim of this study was to investigate these isolates using molecular subtyping protocols for evidence of genetic relationships and for the presence of antibiotic resistance-encoding class 1 integron structures.Genomovar classifications were assigned to each isolate based on HaeIII enzyme profiles of their recA locus. Genetic relationships among this collection were also assessed after restriction fragment length polymorphism (RFLP)-mediated analysis of the 16S rDNA locus and DNA amplification fingerprinting (DAF). The surface expression of the cable pilus gene (cblA) may facilitate an early step in the infection process. All isolates were tested by amplification strategies for this marker. Burkholderia cepacia is known to be resistant to several antimicrobial agents. Resistance typing showed that the majority were resistant to three or more common antimicrobial agents. Five of the 17 isolates were resistant to sulphonamide, a characteristic linked with the presence of class 1 integrons. Gene cassettes containing beta-lactamase (oxa) and aminoglycoside acetyltransferase (aac(6')-1a) encoding genes were identified by polymerase chain reaction amplification.Most of the isolates in this study were classified as genomovar III and were indistinguishable based on their corresponding 16S rDNA-RFLP profiles, whilst DAF further subtyped the collection. The cblA marker was identified in 47% of the isolates, many of which clustered in the genomovar III group. Class 1 integrons with recombined gene cassettes containing bla-OXA and aac(6')-1a genes were identified.This study demonstrates the application of molecular methods to investigate B. cepacia, a well-recognized human pathogen, cultured from Irish CF patients. Genomovar III was the most common genomic type identified. DNA fingerprinting further subtyped the latter isolates, facilitating a more detailed description of the molecular epidemiology. Drug resistance in these organisms can be explained, at least in part, by the presence of class 1 integrons. Development of targeted infection control strategies could be facilitated using these applied methods.
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- 2002
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8. Rotavirus in Ireland: national estimates of disease burden, 1997 to 1998
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B. Cryan, Dominic Whyte, Roger I. Glass, M. Lynch, Séamus Fanning, and Fiona O'Halloran
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Rotavirus ,Microbiology (medical) ,medicine.medical_specialty ,Pediatrics ,Population ,Disease ,medicine.disease_cause ,Rotavirus Infections ,fluids and secretions ,Cost of Illness ,Epidemiology ,medicine ,Humans ,education ,Disease burden ,education.field_of_study ,business.industry ,Incidence ,Incidence (epidemiology) ,Infant, Newborn ,Infant ,Patient Discharge ,Hospitalization ,Diarrhea ,Infectious Diseases ,El Niño ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,Seasons ,medicine.symptom ,business ,Ireland ,Sentinel Surveillance - Abstract
Background. We estimated the disease burden caused by rotavirus hospitalizations in the Republic of Ireland by using national data on the number of hospitalizations for diarrhea in children and laboratory surveillance of confirmed rotavirus detections. Methods. We examined trends in diarrheal hospitalizations among children
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- 2001
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9. Antimicrobial resistance profiling and DNA Amplification Fingerprinting (DAF) of thermophilic Campylobacter spp. in human, poultry and porcine samples from the Cork region of Ireland
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C. Feurer, Brigid Lucey, P. Greer, B. Cryan, Séamus Fanning, and P. Moloney
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DNA, Bacterial ,Spectinomycin ,Swine ,Tetracycline ,Penicillins ,Drug resistance ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Campylobacter jejuni ,Poultry ,Microbiology ,Campylobacter Infections ,medicine ,Animals ,Humans ,Typing ,biology ,Campylobacter ,Drug Resistance, Microbial ,General Medicine ,biology.organism_classification ,Antimicrobial ,DNA Fingerprinting ,Anti-Bacterial Agents ,DNA profiling ,Ampicillin ,Ireland ,Sulfisoxazole ,Biotechnology ,medicine.drug - Abstract
Antimicrobial resistance (R) typing and DNA Amplification Fingerprinting (DAF) of a random collection of 84 Irish thermophilic Campylobacter isolates is described. The collection included human, veterinary (porcine) and poultry isolates cultured between 1996 and 1998 in the Cork region of Ireland. Biochemical and molecular methods were used to identify Campylobacter jejuni and Camp. coli. Many of these isolates were simultaneously resistant to several common antimicrobial agents. In particular, resistance to ampicillin, spectinomycin, sulphafurazole and tetracycline was common. A total of 74 DAF profiles was identified among the study collection, showing a high degree of diversity. Dendrogram analysis of the DNA patterns identified three main clusters at the 50% similarity level, which included two clusters of Camp. coli and a third containing a mixture of Camp. jejuni and Camp. coli.
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- 2000
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10. A comparison of the efficiency of ELISA and selected primer sets to detect Norovirus isolates in southern Ireland over a four-year period (2002-2006): variation in detection rates and evidence for continuing predominance of NoV GII.4 genotype
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Lynda Gunn, Grainne Lennon, P. V. Coyle, Séamus Fanning, N. Reidy, B. Cryan, Helen O’Shea, and P. J. Collins
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Time Factors ,Genotype ,Molecular Sequence Data ,Early detection ,Enzyme-Linked Immunosorbent Assay ,Biology ,medicine.disease_cause ,Disease Outbreaks ,Age groups ,Virology ,medicine ,Humans ,Phylogeny ,Caliciviridae Infections ,DNA Primers ,Phylogenetic tree ,Base Sequence ,Reverse Transcriptase Polymerase Chain Reaction ,Norovirus ,Outbreak ,General Medicine ,Primer (molecular biology) ,Detection rate ,Ireland ,Sequence Alignment - Abstract
Norovirus (NoV) gastroenteritis occurs in all age groups and is the most common cause of gastroenteritis in the community. However, detection methods and rates vary widely, and few data are available to compare these, particularly in Ireland. Detection of noroviruses through antigen and molecular-based strategies was carried out on 135 suspected NoV-positive samples, collected over the course of three NoV outbreaks, from 2002 to 2006, in the southern region of Ireland. A commercially available ELISA and a panel of six primer sets were evaluated to determine their suitability for NoV detection in Irish clinical samples. The key findings of this study were the detection of both GGI and GGII noroviruses by ELISA, but the detection of only GGII noroviruses by RT-PCR. In addition to this, a variation in the levels of detection from 9.4 % to 17.3 % was observed for conventional PCR assays, while a detection rate of 46.3 % was observed for the real-time PCR assay. A proportion (17.8 %) of samples were found to be negative by all detection strategies, suggesting the possibility of reporting false positives for these samples or low-copy positives that do not often repeat. Sequencing information from selected samples also revealed nucleotide polymorphisms, compromising efficient primer binding in the case of one primer pairing. Phylogenetic analysis of the partial polymerase gene identified NoV GII.4 as the dominant genotype, in accordance with previous NoV studies in Ireland. Investigating the NoV diversity of the circulating strains and the dynamics of strain replacement is important to better assess the efficacy of future NoV vaccines and to facilitate the early detection of changes in circulating NoV strains.
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- 2013
11. Tuberculosis due to Mycobacterium bovis in humans in the south-west region of ireland: Is there a relationship with infection prevalence in cattle?
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T.P. Cotter, H. Cummins, C. P. Bredin, S Sheehan, B Cryan, and E. O'Shaughnessy
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Pulmonary and Respiratory Medicine ,Veterinary medicine ,Tuberculosis ,Immunology ,Tuberculin ,Disease ,Microbiology ,Prevalence ,medicine ,Retrospective analysis ,Animals ,Humans ,Mycobacterium bovis ,Rural community ,biology ,business.industry ,Incidence ,Incidence (epidemiology) ,Infection prevalence ,medicine.disease ,biology.organism_classification ,Cattle ,business ,Ireland ,Tuberculosis, Bovine - Abstract
Objective: To compare the incidence of tuberculosis due to Mycobacterium bovis in humans to the prevalence of M. bovis infection in cattle in south-west Ireland and discuss possible links between them. Setting: In the south-west region of Ireland, a mixed urban and rural community (pop. 536 000), there is a residuum of human tuberculosis caused by M. bovis . Methods: A retrospective analysis of the incidence of culture-positive M. bovis disease in humans in south-west Ireland from 1983 to 1994 and of the results of tuberculin testing in cattle from 1978 to 1994 for the same region. Results: One to five cases of human tuberculosis due to M. bovis were recorded per year while the overall prevalence of bovine infection fell gradually during the period of study from 467 tuberculin-positive animals per 100 000 cattle tested in 1983 to 158 per 100 000 in 1994. Conclusion: The low incidence plateau of human tuberculosis due to M. bovis together with the decline in prevalence of animal infection in the overall period studied suggest a cut-off in the animal to human chain of infection at two points; the animal source and the ingestion of (now pasteurized) milk. This would suggest that disease in humans is now due to reactivation of previous foci of infection which were acquired when milk pasteurization was not compulsory. Based on this, we would anticipate a further reduction and possible elimination of human tuberculosis due to M. bovis in this region in the next 10–15 years.
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- 1996
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12. Susceptibility to Varicella Zoster Virus Infection in Health Care Workers
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B Cryan, Joseph J. Gallagher, and B Quaid
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Adult ,Herpesvirus 3, Human ,medicine.medical_specialty ,Infectious Disease Transmission, Patient-to-Professional ,viruses ,Fluorescent Antibody Technique ,Enzyme-Linked Immunosorbent Assay ,Antibodies, Viral ,medicine.disease_cause ,Sensitivity and Specificity ,Occupational safety and health ,Occupational medicine ,Chickenpox ,Occupational Exposure ,Internal medicine ,Health care ,Epidemiology ,medicine ,Humans ,Cross Infection ,business.industry ,Public health ,Public Health, Environmental and Occupational Health ,Varicella zoster virus ,virus diseases ,Middle Aged ,medicine.disease ,Personnel, Hospital ,Immunoglobulin M ,Immunoglobulin G ,Immunology ,Viral disease ,business ,Ireland ,Latex Fixation Tests - Abstract
Varicella zoster virus (VZV) is an occupational hazard for a percentage of health care staff. Nine hundred and seventy staff members attending the Occupational Health Department at Cork University Hospital took part in the survey. A latex agglutination assay was used to determine the health care workers immune status to VZV. Of the 970 workers tested, 928 (95.7%) were immune to VZV. The sensitivity, specificity and predictive value of an enquiry regarding a history of chicken-pox was determined on a sample of 206 health care workers. The positive predictive value was 95% (119/125) and the negative predictive value was 11% (4/35). The sensitivity of the enquiry was 79% (119/150), the specificity was 40% (4/10), reducing to 61% (119/195) and 36% (4/11) respectively when individuals with uncertain histories were included in the calculations. The advantages and disadvantages of selective staff screening are discussed. In the authors' opinion all health care workers involved in the clinical care of patients should be screened by serology for past VZV infection before taking up duty and those who are susceptible to VZV should be made aware of the risks and health effects associated with VZV if contracted.
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- 1996
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13. Emergence of group B Streptococcus serotype IV in women of child-bearing age in Ireland
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B. Cryan, Brigid Lucey, L. Cotter, Aidan Coffey, R. A. Kiely, and A. M. Mollaghan
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Serotype ,Adult ,medicine.medical_specialty ,Time Factors ,Epidemiology ,medicine.disease_cause ,Communicable Diseases, Emerging ,Group B ,Streptococcus agalactiae ,Streptococcal Infections ,medicine ,Humans ,biology ,Streptococcus ,Genetic heterogeneity ,business.industry ,Streptococcaceae ,biology.organism_classification ,Virology ,Infectious Diseases ,Carriage ,Female ,business ,Ireland - Abstract
SUMMARYThis study determined the carriage rate and serotype distribution of group BStreptococcus(GBS) in women of child-bearing age in the southern region of Ireland. A total of 2000 vaginal swabs collected in two periods in 2004 and 2006 were examined and revealed a GBS carriage rate of 16·1%. Serotyping of isolates showed that serotypes Ia, II, III, IV, and V were the most prevalent. A high prevalence of serotype IV was found, increasing from 7·6% to 15·2% between 2004 and 2006. Random amplified polymorphic DNA analysis demonstrated considerable genetic heterogeneity in the serotype IV isolates. This serotype should be considered for inclusion in potential vaccines for use in Ireland.
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- 2010
14. Salmonella tel-el-kebir and terrapins
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M. Daly, B. O'Brien, B. Cryan, Séamus Fanning, F. Morrison, and M. Lynch
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Adult ,Microbiology (medical) ,Veterinary medicine ,Salmonella ,Terrapin ,Microbial Sensitivity Tests ,Biology ,medicine.disease_cause ,Polymerase Chain Reaction ,Disease Outbreaks ,law.invention ,Feces ,law ,Zoonoses ,hemic and lymphatic diseases ,medicine ,Animals ,Humans ,Child ,Molecular Biology ,Close contact ,Polymerase chain reaction ,Salmonella Infections, Animal ,Laboratory methods ,Outbreak ,biology.organism_classification ,Dna amplification ,Anti-Bacterial Agents ,Turtles ,Infectious Diseases ,Salmonella Infections ,Female ,Ireland - Abstract
Objectives : an outbreak of Salmonella tel-el-kebir occurring over a 6-month period is described in this report. This is thefirst outbreak of S. tel-el-kebir in the reported literature. Methods : S. tel-el-kebir was isolated from human faecal samples using conventional laboratory methods. Results : eight patients had S. tel-el-kebir isolated from faeces. All patients were owners of, or in close contact with, pet terrapins. The terrapins were purchased in the same pet shop, where they were imported from America. The epidemiological link with these pets was confirmed, as S. tel-el-kebir was isolated from cloacal swabs from the terrapins, and from terrapin water. Molecular biology studies using DNA amplification fingerprinting (DAF) gave identical fingerprint patterns for all human and terrapin isolates. Conclusions : Salmonellosis associated with exotic pets is a re-emerging disease in the 1990s, and measures to reduce this are discussed.
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- 1999
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15. Emergence of G3 and G9 rotavirus and increased incidence of mixed infections in the southern region of Ireland 2001-2004
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N. Reidy, Séamus Fanning, B. Cryan, F. O'Halloran, and Helen O’Shea
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Rotavirus ,medicine.medical_specialty ,Reoviridae ,medicine.disease_cause ,Rotavirus Infections ,Feces ,Virology ,Epidemiology ,Medicine ,Humans ,Antigens, Viral ,biology ,business.industry ,Incidence (epidemiology) ,Incidence ,Infant ,biology.organism_classification ,Gastroenteritis ,Vaccination ,Diarrhea ,Infectious Diseases ,Child, Preschool ,Etiology ,Capsid Proteins ,medicine.symptom ,business ,Ireland - Abstract
Two hundred and thirty fecal specimens were collected from children (up to 5 years of age) admitted with suspected rotaviral gastroenteritis at four Irish hospitals (Cork University Hospital, Mercy Hospital, Cork, Waterford Regional Hospital, and Kerry General Hospital) in the southern region of Ireland, between 2001 and 2004. Following laboratory confirmation of the aetiological agent, the rotavirus G-type was determined in all positive samples by reverse transcriptase-polymerase chain reaction (RT-PCR). The distribution of the G-types (n = 230) over the 3 year period was G1 (31%), G9 (21.8%), G3 (8.7%), G4 (6.5%), and G2 (3.5%). There were many mixed infections which accounted for 28.5% of the collection. G9 emerged as the most prevalent G type (30.1%) in 2001–2002, whilst G3 first emerged in 2002–2003 and accounted for 15.8% of the collection. Notably, G2 strains were present at a very low frequency (3.5%) during 2001–2004, compared to an earlier study (1997–1999), where they accounted for 28.5% of the specimens. A smaller subset of the study collection was similarly P-typed (n = 139). P[8]-type was identified as the most prevalent P-type, accounting for 97.4% (n = 186), while P[4] accounted for just 2.6% (n = 5) of the collection. The low frequency of P[4] coincided with the decrease in G2 strains in circulation. The key finding in this study was the emergence of G3- and G9-serotypes as epidemiologically important rotavirus strains since 1999, and the low prevalence of the previously common G2 strains in Ireland. The profile of rotavirus is changing continuously in Ireland and the implications for a successful vaccination program are discussed. J. Med. Virol. 77:571–578, 2005. © 2005 Wiley-Liss, inc.
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- 2005
16. Antibiotic prescribing policy and Clostridium difficile diarrhoea
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Kieran O'Connor, B. Cryan, M. Kingston, Denis O'Mahony, M. O'Donovan, and C. Twomey
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Diarrhea ,Male ,medicine.medical_specialty ,medicine.drug_class ,Cephalosporin ,Antibiotics ,Moxifloxacin ,Internal medicine ,medicine ,Humans ,Medical prescription ,Practice Patterns, Physicians' ,Intensive care medicine ,Enterocolitis, Pseudomembranous ,Aged ,Retrospective Studies ,Cross Infection ,business.industry ,Clostridioides difficile ,Incidence (epidemiology) ,Mortality rate ,Incidence ,General Medicine ,Clostridium difficile ,Anti-Bacterial Agents ,Cephalosporins ,Hospitalization ,Injections, Intravenous ,Female ,medicine.symptom ,business ,Ireland ,medicine.drug - Abstract
Background: Broad-spectrum antibiotics, particularly intravenous cephalosporins, are associated with Clostridium difficile diarrhoea. Diarrhoea due to C. difficile is a growing problem in hospitals, especially among elderly patients. Aim: To establish whether changing an antibiotic policy with the aim of reducing the use of injectable cephalosporins leads to a reduction in the incidence of C. difficile diarrhoea in elderly patients. Design: Retrospective analysis. Methods: A group of patients who were subject to the new antibiotic policy from the period following July 2000, were compared with patients who were admitted prior to July 2000 and were not subject to the new policy. Infections, antibiotic prescriptions and mortality rates were determined from case notes, and C. difficle diarrhoea rates from microbiological data. Results: Intravenous cephalosporin use fell from 210 to 28 defined daily doses ( p < 0.001) following the change in antibiotic policy, with a corresponding increase in piperacillin-tazobactam ( p < 0.001) and moxifloxacin ( p < 0.001) use. The new policy led to a significant reduction in C. difficile diarrhoea cases. The relative risk of developing C. difficile infection with the old policy compared to the new policy was 3.24 (95%CI 1.07–9.84, p = 0.03). Discussion: The antibiotic policy was successfully introduced into an elderly care service. It reduced both intravenous cephalosporin use and C. difficile diarrhoea.
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- 2004
17. Nontuberculous mycobacteria: incidence in Southwest Ireland from 1987 to 2000
- Author
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S Sheehan, B Cryan, Marcus P. Kennedy, TM O'Connor, Ciara Ryan, and C. P. Bredin
- Subjects
Pulmonary and Respiratory Medicine ,nontuberculous mycobacteria ,Adult ,Male ,medicine.medical_specialty ,Tuberculosis ,Population ,mycobacteria other than tuberculosis ,Mycobacterium tuberculosis ,Internal medicine ,human immunodeficiency virus ,Epidemiology ,medicine ,Humans ,education ,Retrospective Studies ,atypical mycobacteria ,education.field_of_study ,Mycobacterium bovis ,Mycobacterium Infections ,biology ,business.industry ,Incidence (epidemiology) ,Incidence ,Middle Aged ,medicine.disease ,biology.organism_classification ,bacterial infections and mycoses ,immunocompromised ,Immunology ,Nontuberculous mycobacteria ,Female ,business ,Ireland ,Mycobacterium - Abstract
Setting: The Southwest of Ireland (Counties Cork and Kerry) 1987–2000, average population 549 500. Objective: Nontuberculous mycobacteria (NTM) cause significant morbidity worldwide and the study of epidemiology and characteristics helps in their prevention and treatment. This study was performed to determine the incidence of NTM disease in comparison to Mycobacterium tuberculosis ( M. tuberculosis ) and Mycobacterium bovis ( M. bovis ) in Southwest Ireland, over the above time period. Design: A retrospective study was carried out in all human isolates of NTM, M. tuberculosis and M. bovis between 1987 and 2000, in the Southwest Region of Ireland. Results: The mean incidence of NTM (0.4/100 000 population) has risen since 1995, principally of pulmonary Mycobacterium avium intracellulare complex (MAC). The annual incidence of M. tuberculosis in humans over 14 years in the same region was 9.71/100 000 population with a significant reduction since 1994 and M. bovis remained constant at 0.5/100 000 population. Conclusion: The increasing incidence of disease causing NTM noted in Southwest Ireland reflects global data and is surmised to be due to an ageing population, increased incidence related to chronic fibrotic lung disease, and environmental mycobacterial factors.
- Published
- 2003
18. Application of restriction fragment length polymorphism analysis of VP7-encoding genes: fine comparison of Irish and global rotavirus isolates
- Author
-
Fiona O'Halloran, B. Cryan, M. Lynch, and Séamus Fanning
- Subjects
Microbiology (medical) ,Serotype ,Rotavirus ,Population ,Molecular Sequence Data ,Genetic relationship ,Biology ,medicine.disease_cause ,Global Health ,Rotavirus Infections ,Restriction fragment ,fluids and secretions ,Capsid ,Virology ,Genetic variation ,medicine ,Humans ,Amino Acid Sequence ,Serotyping ,education ,Antigens, Viral ,Genetics ,education.field_of_study ,Reverse Transcriptase Polymerase Chain Reaction ,Genetic Variation ,Infant ,Sequence Analysis, DNA ,EcoRV ,Child, Preschool ,biology.protein ,Capsid Proteins ,Restriction fragment length polymorphism ,Ireland ,Polymorphism, Restriction Fragment Length - Abstract
A restriction fragment length polymorphism (RFLP) detection assay was developed to examine the genetic relationship(s) among VP7-encoding genes from 100 Irish rotavirus isolates and 30 randomly selected global rotavirus isolates (from the current databases). RFLP analysis of the VP7 gene segments was performed independently with three enzymes ( Rsa I, Alu I, and Eco RV) in separate reactions by direct digestion of the DNA product amplified by reverse transcriptase (RT)-mediated PCR (RT-PCR) or by using computational methods. Thirty-six RFLP patterns were identified for all 130 strains, and of these, only nine patterns were associated with the Irish isolates. A correlation between the G type of the Irish isolates and certain single or combined enzyme profiles was apparent. These data suggested that the Irish wild-type rotavirus population was homogeneous and could be distinguished by RFLP analysis from global isolates of the same serotype(s). The deduced amino acid sequences of the VP7 RT-PCR products from six Irish isolates known to be of the G serotype revealed significant amino acid substitutions within major antigenic regions. In addition, these data identified the existence of at least two genetic lineages within serotype G1 strains which were distinguishable by RFLP analysis.
- Published
- 2002
19. Molecular characterization of rotavirus in Ireland: detection of novel strains circulating in the population
- Author
-
M. Lynch, Fiona O'Halloran, Séamus Fanning, Helen O’Shea, and B. Cryan
- Subjects
Microbiology (medical) ,Serotype ,Diarrhea ,Rotavirus ,Genotype ,Population ,Molecular Sequence Data ,Reoviridae ,Biology ,medicine.disease_cause ,Rotavirus Infections ,Microbiology ,Virology ,medicine ,Humans ,Typing ,Serotyping ,education ,Genotyping ,education.field_of_study ,Reverse Transcriptase Polymerase Chain Reaction ,Infant ,Sequence Analysis, DNA ,biology.organism_classification ,Child, Preschool ,DNA, Viral ,Electrophoresis, Polyacrylamide Gel ,medicine.symptom ,Ireland - Abstract
A collection of three hundred thirty rotavirus-positive stool samples from children with diarrhea in the southern and eastern regions of Ireland between 1997 and 1999 were submitted to the Molecular Diagnostics Unit of the Cork Institute of Technology, Cork, Ireland, for investigation. These strains were characterized by several methods, including polyacrylamide gel electropherotyping and G and P genotyping. A subset of the G types was confirmed by nucleic acid sequencing. The most prevalent types found in this collection included G1P[8] (n = 106; 32.1%), G2P[4] (n = 94; 28.5%), and G4P[8] (n = 37; 11.2%). Novel strains were also detected, including G1P[4] (n = 19; 5.8%), and G4P[4] (n = 2; 0.6%). Interestingly, mixed infections accounted for 18.8% (n = 62) of the total collection, with only 3% (n = 10) which were not G and/or P typeable. Significantly, six G8 and five G9 strains were identified as part of mixed infections. These strains have not previously been identified in Irish children, suggesting a greater diversity in rotavirus strains currently circulating in Ireland.
- Published
- 2000
20. Farmer's lung in Ireland (1983-1996) remains at a constant level
- Author
-
B. Cryan, C. P. Bredin, J.L. Kiely, and Deirdre McGrath
- Subjects
Male ,medicine.medical_specialty ,Climate ,Rain ,Risk Factors ,Epidemiology ,medicine ,Prevalence ,Humans ,Prospective Studies ,Socioeconomics ,Prospective cohort study ,business.industry ,Farmer's lung ,Incidence (epidemiology) ,Incidence ,General Medicine ,University hospital ,medicine.disease ,Respiratory Medicine ,Survival Rate ,Epidemiological Monitoring ,Farmer's Lung ,Female ,business ,Ireland ,Working environment ,Environmental Monitoring - Abstract
A prospective study was undertaken by the Departments of Respiratory Medicine and Medical Microbiology at the Cork University Hospital, a. to investigate the epidemiology of Farmer’s Lung (F.L.) in the Republic of Ireland (pop. 3.5 million), with special reference to the South Western Region of this country (pop. 536,000) and b. to assess any relationship between the prevalence/incidence of F.L. with climatic factors in South West Ireland, between 1983 and 1996. F.L. incidence remained constant throughout the 13 yrs studied both on a national and a regional basis. A significant relationship was also found between total rainfall each summer and F.L. incidence and prevalence over the following yr (p
- Published
- 1999
21. United front--veterinary and medical collaboration
- Author
-
C, Foley-Nolan, J, Buckley, E, O'Sullivan, and B, Cryan
- Subjects
Adult ,Male ,Veterinary Medicine ,Salmonella Infections, Animal ,Adolescent ,Swine ,Incidence ,Disease Outbreaks ,Milk ,Risk Factors ,Epidemiological Monitoring ,Salmonella Infections ,Disease Transmission, Infectious ,Animals ,Humans ,Cattle ,Clinical Medicine ,Cooperative Behavior ,Water Microbiology ,Chickens ,Ireland ,Disease Reservoirs ,Environmental Monitoring - Abstract
Four cases of concomitant animal and human Salmonellosis were investigated. Liaison took place between veterinary, public health medical and environmental health professionals. An epidemiological association between veterinary and medical disease outbreaks was established following cases in a dairy unit, a poultry unit, a calf rearing unit and one pig and dairy unit (on the same farm). In three cases clinical disease in animals preceded clinical disease in humans while in the fourth case, the poultry unit, salmonella isolations from poultry carcasses coincided with clinical salmonellosis in a human working with the live poultry. Important epidemiological factors are identified. The problems of delay in seeking veterinary advice, compartmentalisation of veterinary and medical practices, and the benefits of direct collaboration between veterinary and medical professionals in the event of a diagnosis of salmonellosis in animals and/or humans are highlighted. A collaborative reporting and liaison model is proposed.
- Published
- 1998
22. Human Mycobacterium bovis infection in the south-west of Ireland 1983-1992: a comparison with M. tuberculosis
- Author
-
T P, Cotter, E, O'Shaughnessy, S, Sheehan, B, Cryan, and C P, Bredin
- Subjects
Male ,Incidence ,Infant, Newborn ,Urban Health ,Mycobacterium tuberculosis ,Rural Health ,Middle Aged ,Mycobacterium bovis ,Milk ,Animals ,Humans ,Tuberculosis ,Female ,Ireland ,Tuberculosis, Pulmonary - Abstract
Epidemiological and bacteriological aspects of human Mycobacterium bovis disease were investigated in south-west Ireland (counties CorkKerry, population 536,000) over the years 1983-92 inclusive and compared to M. tuberculosis. Results showed a small, stable incidence of culture positive M. bovis human disease, mean annual incidence 0.56 per 100,000 population compared to a higher but declining incidence of culture positive M. tuberculosis (15.3 per 100,000 in 1983, 9.0 per 100,000 in 1992). Male patients were the majority, 63.4 per cent of M. bovis; 62.4% of M. tuberculosis (p = 0.03). Fifty three per cent of M. bovis cases (n = 30) were pulmonary, compared to 85% of M. tuberculosis (n = 626; p = 0.0001). M. bovis patients were older (p = 0.02), mean age 58.4 years (SD 18.9) compared to 48.5 (SD 22.2). The mycobacterial smear positive rate was similar in both groups taken as a whole. No rural-urban difference in incidence was found in either disease, suggesting in the case of M. bovis initial infection in childhood via contaminated milk in the pre-pasteurisation era.
- Published
- 1996
23. Meningococcus: a menace in Cork?
- Author
-
F M, Ryan, C, Foley-Nolan, E, Keane, M, O'Sullivan, J, Clair, B, Cryan, and E, O'Murchu
- Subjects
Male ,Meningococcal Infections ,Survival Rate ,Age Distribution ,Incidence ,Communicable Disease Control ,Humans ,Female ,Sex Distribution ,Ireland ,Aged - Abstract
A review of laboratory isolates and notifications of meningococcal disease in the Cork area was conducted for the period 1989-93. The study aimed to describe the epidemiology of meningococcal disease in the area. The incidence of meningococcal disease is high in the Cork area and has been increasing since 1991 with a peak incidence of laboratory confirmed cases of 6.5 per 100,000 in 1993. In the five year review period 113 notifications of meningococcal disease were identified of which 61 (54%) were laboratory confirmed and 52 (46%) were clinically diagnosed only. All laboratory confirmed cases had been notified to the local Director of Community Care/Medical Officer of Health. Group C organisms comprised two-thirds of isolates in 1992 and 1993. Comparison of regional and national incidence rates must be based on laboratory confirmed cases as the criteria for diagnosis and completeness of notifications may vary. A National Infectious Disease Surveillance Centre is vital for monitoring trends and for the coordinated development of a national policy on control and prevention of meningococcal disease.
- Published
- 1996
24. Respiratory pathogens: resistance patterns
- Author
-
M, Lynch and B, Cryan
- Subjects
Population Surveillance ,Humans ,Drug Resistance, Microbial ,Ireland ,Respiratory Tract Infections - Published
- 1995
25. Lyme disease in Ireland
- Author
-
B, Cryan, S, Cutler, and D J, Wright
- Subjects
Adult ,Male ,Lyme Disease ,Immunoblotting ,Fluorescent Antibody Technique ,Humans ,Enzyme-Linked Immunosorbent Assay ,Female ,Middle Aged ,Ireland - Abstract
The data pertaining to Irish specimens sent to the Lyme disease Laboratory at Charing Cross Hospital since 1986 is presented and discussed. In the period up to June 1990, 484 specimens were tested, 14% of these were positive by enzyme linked immunosorbent assay or indirect immunofluorescent assay. Only 13 of these were confirmed as positive by immunoblotting.
- Published
- 1992
26. Enterohaemorrhagic Escherichia coli serotype O157:H7 as an enteric pathogen in Irish children
- Author
-
B, Cryan
- Subjects
Diarrhea ,Child, Preschool ,Escherichia coli ,Humans ,Serotyping ,Gastrointestinal Hemorrhage ,Ireland - Abstract
In this study sorbitol MacConkey agar was used to screen E. coli isolated from 894 children with diarrhoea. Thirty-four non-sorbitol fermenters were detected. On serotyping, three organisms belonged to the O157 serogroup. Only one of these possessed the H7 antigen. This organism was a verotoxin producer. These findings suggest that E. coli O157:H7 is an uncommon enteric pathogen in Irish children.
- Published
- 1989
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