1. Development and validation of the first consensus gene-expression signature of operational tolerance in kidney transplantation, incorporating adjustment for immunosuppressive drug therapy.
- Author
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Christakoudi S, Runglall M, Mobillo P, Rebollo-Mesa I, Tsui TL, Nova-Lamperti E, Taube C, Norris S, Kamra Y, Hilton R, Augustine T, Bhandari S, Baker R, Berglund D, Carr S, Game D, Griffin S, Kalra PA, Lewis R, Mark PB, Marks SD, MacPhee I, McKane W, Mohaupt MG, Paz-Artal E, Kon SP, Serón D, Sinha MD, Tucker B, Viklický O, Stahl D, Lechler RI, Lord GM, and Hernandez-Fuentes MP
- Subjects
- Adult, Aged, Case-Control Studies, Consensus, Female, Graft Rejection genetics, Humans, Immunosuppressive Agents pharmacology, Kidney Transplantation adverse effects, Logistic Models, Male, Middle Aged, Real-Time Polymerase Chain Reaction, Gene Expression Profiling methods, Gene Regulatory Networks drug effects, Graft Rejection prevention & control, Immunosuppressive Agents therapeutic use, Transplantation Tolerance
- Abstract
Background: Kidney transplant recipients (KTRs) with "operational tolerance" (OT) maintain a functioning graft without immunosuppressive (IS) drugs, thus avoiding treatment complications. Nevertheless, IS drugs can influence gene-expression signatures aiming to identify OT among treated KTRs., Methods: We compared five published signatures of OT in peripheral blood samples from 18 tolerant, 183 stable, and 34 chronic rejector KTRs, using gene-expression levels with and without adjustment for IS drugs and regularised logistic regression., Findings: IS drugs explained up to 50% of the variability in gene-expression and 20-30% of the variability in the probability of OT predicted by signatures without drug adjustment. We present a parsimonious consensus gene-set to identify OT, derived from joint analysis of IS-drug-adjusted expression of five published signature gene-sets. This signature, including CD40, CTLA4, HSD11B1, IGKV4-1, MZB1, NR3C2, and RAB40C genes, showed an area under the curve 0⋅92 (95% confidence interval 0⋅88-0⋅94) in cross-validation and 0⋅97 (0⋅93-1⋅00) in six months follow-up samples., Interpretation: We advocate including adjustment for IS drug therapy in the development stage of gene-expression signatures of OT to reduce the risk of capturing features of treatment, which could be lost following IS drug minimisation or withdrawal. Our signature, however, would require further validation in an independent dataset and a biomarker-led trial., Funding: FP7-HEALTH-2012-INNOVATION-1 [305147:BIO-DrIM] (SC,IR-M,PM,DSt); MRC [G0801537/ID:88245] (MPH-F); MRC [MR/J006742/1] (IR-M); Guy's&StThomas' Charity [R080530]&[R090782]; CONICYT-Bicentennial-Becas-Chile (EN-L); EU:FP7/2007-2013 [HEALTH-F5-2010-260687: The ONE Study] (MPH-F); Czech Ministry of Health [NV19-06-00031] (OV); NIHR-BRC Guy's&StThomas' NHS Foundation Trust and KCL (SC); UK Clinical Research Networks [portfolio:7521]., Competing Interests: Declaration of Competing Interest Dr. Christakoudi reports grants from FP7-HEALTH-2012-INNOVATION-1 (project number 305147: BIO-DrIM), grants from National Institute for Health Research (NIHR) Biomedical Research Centre based at Guy's and St Thomas' NHS Foundation Trust and King's College London, during the conduct of the study. Mr. Runglall has nothing to disclose. Dr. Mobillo reports grants from FP7-HEALTH-2012-INNOVATION-1 (project number 305147: BIO-DrIM), during the conduct of the study. Dr. Rebollo-Mesa reports grants from [MR/J006742/1] to MRC Centre for Transplantation, grants from FP7-HEALTH-2012-INNOVATION-1 (project number 305147: BIO-DrIM), during the conduct of the study; other from UCB Pharma SRL, outside the submitted work. Mr. Tsui has nothing to disclose. Dr. Nova-Lamperti reports grants from CONICYT Bicentennial-Becas-Chile scholarship, during the conduct of the study. Dr. Taube has nothing to disclose. Dr. Norris has nothing to disclose. Mr. Kamra has nothing to disclose. Dr. Hilton reports personal fees from Chiesi Ltd, outside the submitted work. Dr. Augustine has nothing to disclose. Dr. Bhandari has nothing to disclose. Dr. Baker has nothing to disclose. Dr. Berglund has nothing to disclose. Dr. Carr has nothing to disclose. Dr. Game reports personal fees from Advisory board Chiesi pharmaceuticals, personal fees from Advisory board Recordati Rare Diseases, personal fees from Advisory board Syneos Health, outside the submitted work. Dr. Griffin has nothing to disclose. Dr. Kalra has nothing to disclose. Dr. Lewis has nothing to disclose. Dr. Mark reports personal fees and non-financial support from Vifor, personal fees from Astrazeneca, grants from Boehringer Ingelheim, personal fees and non-financial support from Pharmacosmos, personal fees from Janssen, personal fees from Novartis, personal fees from Pfizer, personal fees from Bristol Myers Squibb, personal fees and non-financial support from Napp, outside the submitted work. Dr. Marks has nothing to disclose. Dr. MacPhee reports other from AstraZeneca, other from AstraZeneca, grants and personal fees from Chiesi, personal fees from Astellas, personal fees from Sandoz, outside the submitted work. Dr. McKane has nothing to disclose. Dr. Mohaupt has nothing to disclose. Dr. Paz-Artal has nothing to disclose. Dr. Kon has nothing to disclose. Dr. Seron has nothing to disclose. Dr. Sinha has nothing to disclose. Dr. Tucker has nothing to disclose. Prof. Viklicky reports grants from CZECH MINISTRY OF HEALTH, during the conduct of the study. Dr. Stahl reports grants from FP7-HEALTH-2012-INNOVATION-1 (project number 305147: BIO-DrIM), during the conduct of the study. Dr. Lechler has nothing to disclose. Dr. Lord has nothing to disclose. Dr. Hernandez-Fuentes reports grants from FP7-HEALTH-2012-INNOVATION-1 (project number 305147: BIO-DrIM), grants from Medical Research Council MRC grants to Maria P. Hernandez-Fuentes [G0801537/ID: 88245], grants from Guy's and St Thomas’ Charity [grants R080530 and R090782], grants from EU; FP7/2007–2013], under grant agreement [No HEALTH-F5–2010–260687: The ONE Study], grants and non-financial support from National Institute for Health Research (NIHR) Biomedical Research Centre based at Guy's and St Thomas' NHS Foundation Trust and King's College London, non-financial support from Clinical Research Networks [study portfolio number 7521], during the conduct of the study; other from UCB Celltech., outside the submitted work; ., (Copyright © 2020 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2020
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