1. TCR Repertoires of Thymic Conventional and Regulatory T Cells: Identification and Characterization of Both Unique and Shared TCR Sequences
- Author
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Xiaoping Sun, Masashi Watanabe, Baojun Zhang, Thomas Nguyen, Annette Ko, Nan-ping Weng, Alvin Shi, Achouak Achour, Yuan Zhuang, Richard J. Hodes, and Qun Wang
- Subjects
CD4-Positive T-Lymphocytes ,Regulatory T cell ,Receptors, Antigen, T-Cell, alpha-beta ,Immunology ,T-cell receptor ,High-Throughput Nucleotide Sequencing ,hemic and immune systems ,chemical and pharmacologic phenomena ,Biology ,T-Lymphocytes, Regulatory ,Article ,Cell biology ,Machine Learning ,Mice ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,medicine ,T cell immunity ,Animals ,Immunology and Allergy ,030215 immunology - Abstract
Thymic regulatory T cells (tTreg) are critical in the maintenance of normal T cell immunity and tolerance. The role of TCR in tTreg selection remains incompletely understood. In this study, we assessed TCRα and TCRβ sequences of mouse tTreg and thymic conventional CD4+ T cells (Tconv) by high-throughput sequencing. We identified αβ TCR sequences that were unique to either tTreg or Tconv and found that these were distinct as recognized by machine learning algorithm and by preferentially used amino acid trimers in αβ CDR3 of tTreg. In addition, a proportion of αβ TCR sequences expressed by tTreg were also found in Tconv, and machine learning classified the great majority of these shared αβ TCR sequences as characteristic of Tconv and not tTreg. These findings identify two populations of tTreg, one in which the regulatory T cell fate is associated with unique properties of the TCR and another with TCR properties characteristic of Tconv for which tTreg fate is determined by factors beyond TCR sequence.
- Published
- 2020
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