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The Environmental Modeling Center (EMC) at the National Centers for Environmental Prediction (NCEP) and the University of Washington (UW) run parallel drought monitoring systems over the continental United States based on the North American Land Data Assimilation System (NLDAS). The NCEP system uses four land surface models (LSMs): Variable Infiltration Capacity (VIC), Noah, Mosaic, and Sacramento (SAC). The UW system uses VIC, SAC, Noah, and the Community Land Model (CLM). An assessment of differences in drought characteristics using both systems for the period 1979-2008 was performed. For soil moisture (SM) percentiles and runoff indices, differences are relatively small among different LSMs in the same system. However, the ensemble mean differences between the two systems are large over the western United States-in some cases exceeding 20% for SM and runoff percentile differences. These differences are most apparent after 2002 when the NCEP system transitioned to use the real-time North American Regional Reanalysis (NARR) and its precipitation gauge station data. (The UW system went into real-time operation in 2005.) Experiments were performed to address the sources of uncertainties. Comparison of simulations using the two systems with different model forcings indicates that the precipitation forcing differences are the primary source of the SM and runoff differences. While temperature, shortwave and longwave radiation, and wind speed forcing differences are also large after 2002, their contributions to SM and runoff differences are much smaller than precipitation. [ABSTRACT FROM AUTHOR]