126 results on '"Xiaofang, Sun"'
Search Results
2. Large‐scale whole‐exome sequencing association study identifies FOXH1 gene and sphingolipid metabolism pathway influencing major depressive disorder
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Mo Li, Shengying Qin, Yi-Dan Sun, Bixuan Jiang, Luan Chen, Na Zhang, Xiaofang Sun, Hao Wu, and Wei Zhou
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Male ,Candidate gene ,Biology ,Polymorphism, Single Nucleotide ,behavioral disciplines and activities ,FOXH1 gene ,Physiology (medical) ,Exome Sequencing ,mental disorders ,medicine ,Humans ,Genetic Predisposition to Disease ,Pharmacology (medical) ,Genetic Testing ,Letter to the Editor ,Gene ,Exome sequencing ,Genetic association ,Pharmacology ,Genetics ,Depressive Disorder, Major ,Sphingolipids ,major depressive disorder ,rare variants ,Forkhead Transcription Factors ,UK biobank ,medicine.disease ,Biobank ,Psychiatry and Mental health ,burden analysis ,Sphingolipid metabolism ,Major depressive disorder ,whole‐exome sequencing ,Female ,Genome-Wide Association Study - Abstract
In the present study, we performed an exome-wide investigation of the burden of rare disease-causing variants for major depressive disorder (MDD) using 16,702 samples from UK biobank. Gene-based association analysis and candidate gene prioritization analysis indicated that FOXH1 have significant association with MDD. In addition, sphingolipid metabolism pathway was found to be less enriched with rare disease-causing variants in the MDD group, suggesting that this gene set may be involved in the pathophysiology of MDD.
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- 2021
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3. hUCMSCs carrying exenatide prevent T1DM by improving intestinal microflora composition and islet tissue damage repair
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Wei Wang, Yahao Wang, Jingwei Chi, Xiaojun Tan, Jianxia Hu, Xiaolong Ma, Xiaofang Sun, Kui Che, Wenshan Lv, and Yangang Wang
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Blood Glucose ,Mice ,Diabetes Mellitus, Type 1 ,Mice, Inbred NOD ,Genetics ,Humans ,Animals ,Exenatide ,Molecular Medicine ,Mesenchymal Stem Cells ,Molecular Biology ,Genetics (clinical) ,Gastrointestinal Microbiome - Abstract
Background Exenatide is a stable analogue of glucagon-like peptide 1 that can reduce postprandial hyperglycemia and has been utilized as adjunctive therapy for type 1 diabetes mellitus (T1DM). The human umbilical cord is a rich source of MSCs, and human umbilical cord mesenchymal stem cells (hUCMSCs) also show potential to enhance insulin secretion. Here, we aimed to explore the effects of hUCMSCs carrying exenatide in T1DM and further identify the possible mechanisms involved. Methods hUCMSCs were isolated from human umbilical cord tissues, identified, and transduced with recombinant lentivirus carrying exenatide to obtain exenatide-carrying hUCMSCs (hUCMSCs@Ex-4). Results The results showed that hUCMSCs@Ex-4 restored the blood glucose levels and body weight of NOD mice, and repressed immune cell infiltration and islet tissue changes. Additionally, in T1DM mice, treatment with hUCMSCs@Ex-4 reduced the blood glucose levels and promoted repair of islet tissue damage. Moreover, hUCMSCs@Ex-4 attenuated renal tissue lesions in T1DM mice. Applying bioinformatic analysis, the effects of hUCMSCs@Ex-4 were suggested to correlate with decreased abundance of pro-inflammatory intestinal bacteria and increased abundance of anti-inflammatory intestinal bacteria. Conclusion Overall, the study indicated that hUCMSCs carrying exenatide might improve beneficial intestinal microflora abundance and promote islet tissue damage repair, thereby alleviating T1DM.
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- 2022
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4. Metagenomics reveals the response of antibiotic resistance genes to elevated temperature in the Yellow River
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Qiaoling Yu, Qian Han, Shunqin Shi, Xiaofang Sun, Xiaochen Wang, Sijie Wang, Jiawei Yang, Wanghong Su, Zhibiao Nan, and Huan Li
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Environmental Engineering ,Genes, Bacterial ,Environmental Chemistry ,Humans ,Water ,Drug Resistance, Microbial ,Metagenomics ,Pollution ,Waste Management and Disposal ,Anti-Bacterial Agents - Abstract
Climate warming may aggravate the threat of antibiotic resistance genes (ARGs) to environmental and human health. However, whether temperature can predict ARGs and influence their assembly processes remains unknown. Here, we used metagenomic sequencing to explore how gradually elevated water temperature (23 °C, 26 °C, 29 °C, 32 °C, 35 °C) influences ARG and mobile genetic element (MGE) profiles in the Yellow River. In total, 30 ARG types including 679 subtypes were detected in our water samples. Gradually increased temperature remarkably reduced ARG diversity but increased ARG abundance. Approximately 37 % of ARGs and 42 % of MGEs were predicted by temperature, while most others were not sensitive to temperature. For each 1 °C increase in temperature, the ARG abundance rose by 2133 TPM (Transcripts Per kilobase of exon model per Million mapped reads) abundance, and multidrug, tetracycline and peptide resistance genes had the fastest increases. Proteobacteria and Actinobacteria were the primary ARG hosts, with 558 and 226 ARG subtypes, respectively. Although ARG profiles were mainly governed by stochastic process, elevated temperature increased the deterministic process of ARGs in the Yellow River. The abundance of five high-risk ARGs (tetM, mecA, bacA, vatE and tetW) significantly increased with elevated water temperature, and these ARGs co-occurred with several opportunistic pathogens (Delftia, Legionella and Pseudomonas), implying that antibiotic resistance risk may increase under climate warming. Our study explored the possibility of predicting resistomes and their health risks through temperature, providing a novel approach to predict and control ARGs in water environments under climate warming.
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- 2022
5. RS12574989 and haplotype associated with α/β-chain imbalance and population HbA2 reduction
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Qiyin, Lin, Yingjun, Xie, Xuan, Zhong, Xiaofang, Sun, and Ding, Wang
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Male ,Genotype ,Haplotypes ,Mutation ,beta-Thalassemia ,Genetics ,Humans ,Female ,beta-Globins ,Hemoglobin A2 ,Genetics (clinical) - Abstract
Determining the associated relationship of genotype and phenomenon would benefit the understanding of disease and renew disease intervention means. 14,518 patients who underwent haemoglobin electrophoresis from June 2020 to December 2020 were enrolled in our study, and additional data including sex, age and routine blood examination results were collected. We focused on individuals with normal red blood cell indices and no common thalassemia pathogenic mutation and selected three groups for the following study: the control group (2.5% ≤ HbA2 ≤ 3.5%), the HbA2 under 2.5 group (HbA2 2 under 2.4 group (HbA2 2 under 2.5 group was characterized by a majority of females and lower red blood cell counts and haemoglobin compared with the control group. There were genotypes associated with the grouping as the T of rs12574989 and TTTAGC of the haplotype were significantly increased in the HbA2 under 2.4 group and CTTAGC was significantly decreased in the HbA2 under 2.4 group. This study demonstrated that the genotypes of the population associated with HbA2 were reduced in southern China.
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- 2022
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6. Multimodal Emotion Classification Method and Analysis of Brain Functional Connectivity Networks
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Xiaofang Sun, Xiangwei Zheng, Tiantian Li, Yalin Li, and Lizhen Cui
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Support Vector Machine ,General Neuroscience ,Rehabilitation ,Emotions ,Biomedical Engineering ,Internal Medicine ,Brain ,Humans ,Electroencephalography ,Arousal - Abstract
Since multimodal emotion classification in different human states has rarely been studied, this paper explores the emotional mechanisms of the brain functional connectivity networks after emotional stimulation. We devise a multimodal emotion classification method fusing a brain functional connectivity network based on electroencephalography (EEG) and eye gaze (ECFCEG) to study emotional mechanisms. First, the nonlinear phase lag index (PLI) and phase-locked value (PLV) are calculated to construct the multiband brain functional connectivity networks, which are then converted into binary brain networks, and the seven features of the binary brain networks are extracted. At the same time, the features of the eye gaze signals are extracted. Then, a fusion algorithm called kernel canonical correlation analysis, based on feature level and randomization (FRKCCA), is executed for feature-level fusion (FLF) of brain functional connectivity networks and eye gaze. Finally, support vector machines (SVMs) are utilized to classify positive and negative emotions in multiple frequency bands with single modal features and multimodal features. The experimental results demonstrate that multimodal complementary representation properties can effectively improve the accuracy of emotion classification, achieving a classification accuracy of 91.32±1.81%. The classification accuracy of pupil diameter in the valence dimension is higher than that of additional features. In addition, the average emotion classification effect of the valence dimension is preferable to that of arousal. Our findings demonstrate that the brain functional connectivity networks of the right brain exhibit a deficiency. In particular, the information processing ability of the right temporal (RT) and right posterior (RP) regions is weak in the low frequency after emotional stimulation; Conversely, phase synchronization of the brain functional connectivity networks based on PLI is stronger than that of PLV.
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- 2022
7. [Comprehensive genetic analysis in first or second trimester pregnancy loss using chromosomal microarray with single nucleotide polymorphism probes]
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Lifen, Zhu, Huimin, Zhang, Qiting, Du, Xiaofang, Sun, and Weiqiang, Liu
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Abortion, Spontaneous ,Chromosome Aberrations ,DNA Copy Number Variations ,Pregnancy ,Pregnancy Trimester, Second ,Prenatal Diagnosis ,Humans ,Chromosome Disorders ,Female ,Microarray Analysis ,Polymorphism, Single Nucleotide - Abstract
To explore possible genetic causes associated with early pregnancy loss using chromosomal microarray analysis (CMA) with single nucleotide polymorphism (SNP) probes.A retrospective review was performed by the CMA of samples from 961 patients who spontaneously aborted in our hospital before the 20th week of pregnancy.(1) The total chromosome abnormality rate in miscarriage samples was 54.44% (515/946), including single chromosome abnormality (39.53%), two chromosome abnormality (2.22%), multi-chromosome abnormality (0.42%), triploidy or hypertriploidy (4.86%), copy number variants (CNVs) in 41 cases (4.33%), regions of homozygosity (ROH, 0.74%), mosaic (2.22%) and chimera (0.11%). (2) CNV analysis of 41 cases showed that 85.36% were pathogenic and likely pathogenic, 12.20% were classified as clinical significance unknown and 2.44% were interpreted as likely benign; (3) Among the cases of ROH, 2 cases shown whole-genome homozygosity and 1 case had completely homozygous at chromosome 21. The homozygous regions in 2 cases were located at the end of the short arm of chromosome 16, suggesting the mechanism of ROH in such cases could be the result of isodisomy.Chromosome abnormality is an important genetic factor causing pregnancy loss. The application of CMA with SNP probes can indeed improve the detection rate of chromosome abnormalities and evaluate the risk of reproductive fertility in patients with pregnancy loss.
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- 2022
8. Insulin autoimmune syndrome caused by esomeprazole in a Chinese patient
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Ying, Li, Yan, Liu, Xiaofang, Sun, Yan, Wang, Dunmin, She, and Zhenwen, Zhang
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Endocrinology ,Insulin Antibodies ,Endocrinology, Diabetes and Metabolism ,East Asian People ,Humans ,Insulin ,Esomeprazole ,Hypoglycemia ,Autoimmune Diseases - Abstract
Not required for Clinical Vignettes.
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- 2022
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9. Expression profile and prognostic values of LSM family in skin cutaneous melanoma
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Xiaofang Sun, Jianping Zhang, Can Xiao, and Zili Ge
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Skin Neoplasms ,Genetics ,Humans ,RNA, Messenger ,Prognosis ,Melanoma ,Genetics (clinical) - Abstract
Background The like-Smith (LSM) family is a group of RNA-binding proteins involved in RNA metabolism. However, their involvement in tumors, particularly skin cutaneous melanoma (SKCM), is not fully understood. In this study, we focused on the expression profiles and prognostic values of the LSM family in SKCM. Methods Raw data were downloaded from The Cancer Genome Atlas. The expression profile and prognostic value of LSM genes in SKCM were explored using the GEPIA, cBioPortal, and HPA databases. Protein–protein and gene–gene interaction analyses were performed using STRING and GeneMANIA. Enrichment and Cox regression analysis were conducted using R software. The TISIDB database was used to explore the relationship between LSMs and immunomodulators. Receiver operating characteristic curves and nomogram models were constructed to validate prognostic values. Results mRNA and protein expression levels of LSM2, LSM4, and LSM12 were significantly elevated in SKCM. The upregulated mRNA expression of LSM2 (p = 0.0013) and LSM4 (p = 0.0043) was significantly correlated with poor overall survival in patients with SKCM, whereas only LSM2 (p = 0.049) overexpression was markedly associated with worse disease-free survival. LSM2 overexpression was an independent risk factor (p = 0.013) and was confirmed to have a high prognostic value in SKCM using the receiver operating characteristic curve (AUC = 0.942) and nomogram models. All LSM genes were identified as genomic mutations, whereas alteration of LSM2 (p = 0.0153) significantly affected the overall survival in patients with SKCM. Significant correlations were observed between LSM family expression, immune cell infiltration, and immunomodulator. Furthermore, function and pathway enrichment analysis showed that the LSM family was mainly RNA binding proteins and involved in RNA splicing and degradation. Conclusion Expression profiles and prognostic values of LSM in SKCM were inconsistent. Among the LSM family, only LSM2 may serve as a potential poor prognosticator and immunotherapeutic target of SKCM.
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- 2022
10. Gestational diabetes mellitus is associated with antenatal hypercoagulability and hyperfibrinolysis: a case control study of Chinese women
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Ying Li, Ji Cui, Bin Song, Wei Wu, Danmo Zhu, Junxian Tao, Yan Liu, Xiaofang Sun, Dan Lu, Chao Liu, and Xing Sun
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China ,medicine.medical_specialty ,endocrine system diseases ,medicine.medical_treatment ,Pregnancy in Diabetics ,03 medical and health sciences ,0302 clinical medicine ,Pregnancy ,Fibrinolysis ,medicine ,Humans ,Thrombophilia ,030212 general & internal medicine ,medicine.diagnostic_test ,business.industry ,Obstetrics ,Infant, Newborn ,Pregnancy Outcome ,Case-control study ,nutritional and metabolic diseases ,Obstetrics and Gynecology ,medicine.disease ,Hyperfibrinolysis ,female genital diseases and pregnancy complications ,Thromboelastography ,Gestational diabetes ,Diabetes, Gestational ,Coagulation ,Case-Control Studies ,030220 oncology & carcinogenesis ,Pediatrics, Perinatology and Child Health ,Female ,business - Abstract
To determine the relationship between gestational diabetes mellitus (GDM) and coagulation/fibrinolysis abnormality in antenatal Chinese women.Case control study: 50 women had GDM and 132 did not (the NGDM group) grouping by the International Association of Diabetes and Pregnancy Study Groups (IADPSG) criteria. Maternal plasma biochemistry and previous medical history were collected from perinatal health records. Antenatal coagulation/fibrinolysis activity (CFA) parameters were assessed using thromboelastography and routine CFA parameters, respectively. Univariate and multiple regression analyses were used to evaluate the associations between GDM and CFA parameters. Maternal age, platelet, ALT, ALP, urea nitrogen, and previous history of abortion were taken as the covariables.The women with GDM were significantly older than those without GDM (30.3 vs. 28.6 years,GDM is significantly associated with hypercoagulability and hyperfibrinolysis in these antenatal Chinese women.
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- 2020
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11. Different culture method changing CD105 expression in amniotic fluid MSCs without affecting differentiation ability or immune function
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Ding Wang, Xiaofang Sun, Nengqing Liu, Bing Song, Shu Kong, and Yingjun Xie
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0301 basic medicine ,Amniotic fluid ,Cell ,Cell Separation ,Biology ,Cell morphology ,Umbilical cord ,Umbilical Cord ,Andrology ,amniotic fluid MSCs ,03 medical and health sciences ,0302 clinical medicine ,Osteogenesis ,medicine ,Humans ,Cells, Cultured ,differentiation ability ,immune function ,Cell Proliferation ,cell culture ,Cluster of differentiation ,Cell growth ,Mesenchymal stem cell ,Endoglin ,Gene Expression Regulation, Developmental ,Cell Differentiation ,Mesenchymal Stem Cells ,Original Articles ,Cell Biology ,Amniotic Fluid ,Culture Media ,CD105 ,030104 developmental biology ,medicine.anatomical_structure ,Cell culture ,030220 oncology & carcinogenesis ,Leukocytes, Mononuclear ,Molecular Medicine ,Original Article ,Signal Transduction - Abstract
MSCs are kind of cultured cells that reside in different tissues as inducers or regulators of physiological and pathological processes. Here, we derived MSCs from amniotic fluid and compared their differentiation ability and immunosuppression effect on PHA‐activated PBMC with those of MSCs isolated from umbilical cords. Amniotic fluid MSCs were isolated and cultured on commercial AFC medium and classic MSC medium, and the number and size of colonies were used to evaluate differences in primary and passaged culture. Rate of proliferation, population doubling time, cell morphology, cell surface markers and mRNA expression were measured in subcultured cells. Furthermore, a comparative study was performed with umbilical cord MSCs to assess the ability of differentiation and immunosuppressive effect of PHA‐stimulated PBMCs. Amniotic fluid MSCs were isolated and expanded by three methods, and exhibited nearly all the characteristics of umbilical cord MSCs. Compared with umbilical cord MSCs, amniotic fluid MSCs had an enhanced osteogenic and chrondrogenic differentiation capability, and stronger immunosuppression effect of inhibition of PHA‐activated PBMC division. Culture with commercial AFCs medium yielded the highest percentage of CD105 expression and showed some advantages in primary cell isolation, cell source‐specific marker retention and cell proliferation. We demonstrated that amniotic fluid MSCs exhibited some advantages over umbilical cord MSCs, and different culture media caused cell proliferation, cell surface marker and cell morphology change, but were not associated with varying differentiation capability and immune effects.
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- 2020
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12. Hernioscopy Revealing Rare Abdominal Cocoon Syndrome in an Elderly Patient: A Novel Technique for Abdominal Pathology
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Shaohan Wu, Xiaofang Sun, Yawei Yu, and Jing Wang
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Adult ,Aged, 80 and over ,Male ,Colon ,Abdomen ,Intestine, Small ,Humans ,Hernia, Inguinal ,Laparoscopy ,General Medicine ,Aged - Abstract
BACKGROUND Incarcerated inguinal hernias (IGHs) combined with abdominal cocoons (ACs) are uncommon in adults. Abdominal cavity exploration using laparoscopy via the hernial sac (hernioscopy) has rarely been reported. Here, an elderly man with unilateral IGH complicated by a contralateral inguinal hernia and AC was found using hernioscopy. We present the surgical decision-making points in an elderly patient with IGH, enrich the diversity of AC, and propose a relatively novel hernioscopy approach. CASE REPORT A 90-year-old man presented with chronic constipation and reducible right inguinal masses. A lump in the right groin was strangulated for 2 days, accompanied with progressive abdominal pain, distension, and vomiting. The levels of inflammatory markers were elevated. Abdominal computed tomography revealed a dilated small bowel and a large mass in the right groin. Subsequently, the patient's condition quickly deteriorated. Therefore, he underwent surgical repair of bilateral hernias. Additionally, in our hospital, a total of 46 patients underwent hernioscopy because of IGH. No intraoperative or postoperative complications were observed. According to our clinical practice, hernioscopy via the bilateral hernial sacs was performed in this elderly patient. We found that almost the entire small bowel and colon were encapsulated in a fibrous and cocoon-like membrane, which postoperative pathological results revealed as AC. CONCLUSIONS This is the first report to reveal that AC complicated with IGH could occur in a 90-year-old man. Hernioscopy is a relatively novel and safe surgical approach to abdominal pathology associated with incarcerated or strangulated inguinal hernias. It is rarely used in adults with IGH.
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- 2022
13. A comprehensive evaluation of pre- and post-processing sperm parameters for predicting successful pregnancy rate following intrauterine insemination with the husband's sperms
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Yumei Luo, Mingxing Liu, Shunhong Wu, Mimi Zhang, Jingru Yuan, Yufang Zhong, Qing Li, Xiaofang Sun, Xia Xu, and Detu Zhu
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Male ,Pregnancy Rate ,Pregnancy ,Semen ,Sperm Motility ,Obstetrics and Gynecology ,Humans ,Female ,Spouses ,Spermatozoa ,Insemination, Artificial, Homologous ,Retrospective Studies - Abstract
Background To determine the predictive values of sperm parameters pre- and post-processing by density gradient centrifugation for clinical pregnancy rates (CPRs) following artificial insemination by husband (AIH) in infertile Chinese couples. Methods A total of 3,522 AIH cycles from 1,918 couples were retrospectively analyzed. The parameters were compared between the pregnant and non-pregnant groups and further between different etiological groups (Male-factor, Both-male-and-female-factor, and Other-factor). Multivariate logistic regression analysis was performed to create models for predicting the CPRs of each etiological group. Results The overall CPR was 13.3%. There were significant improvements for most sperm parameters after DGC. Multivariate logistic regression analysis indicated that, in overall AIH cases, the top parameters significantly influencing the CPR of AIH were pre-STR (OR = 1.037; P = 0.048) and post-VSL (OR = 1.036; P = 0.011). In the Male-factor Group, the top influencing parameters were pre-VCL (OR = 2.096; P = 0.008), pre-LIN (OR = 1.930; P = 0.002) and post-VSL (OR = 1.316; P = 0.023). In the Both-factor Group, the top influencing parameters were pre-VCL (OR = 1.451; P = 0.008) and post-motility (OR = 1.218; P = 0.049). In the Other-factor Group, the top influencing parameters were pre-VAP (OR = 1.715; P = 0.024), pre-STR (OR = 1.20; P = 0.011) and post-VSL (OR = 1.04; P = 0.017). Moreover, receiver operating characteristic analysis showed that the logistic regression models of the Male- and Both-factor Groups had greater powers for prognostic classification than those of other groups. Conclusions This study demonstrated that some sperm parameters have a collinearity relationship in predicting the CPR following AIH. Moreover, the predictive capacity of a multivariate logistic regression model is better than those of individual parameters, especially for the Male- and Both-factor Groups. In these cases, pre-VCL is the common top influencing factor.
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- 2022
14. Sperm DNA integrity is critically impacted by male age but does not influence outcomes of artificial insemination by husband in the Chinese infertile couples
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Yumei Luo, Shunhong Wu, Mimi Zhang, Hua Zhou, Jingru Yuan, Yiying Yang, Yufang Zhong, Qing Li, Xiaofang Sun, Xia Xu, and Detu Zhu
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Male ,Aging ,China ,Cell Biology ,DNA ,DNA Fragmentation ,Spermatozoa ,Chromatin ,Pregnancy ,Infertility ,Humans ,Female ,Spouses ,Insemination, Artificial ,Retrospective Studies - Abstract
The sperm chromatin structure assay (SCSA) is crucial for assessing male fertility. However, the predictive value of the SCSA parameters, including the DNA fragment indices (DFI) and the percentages of high DNA stainability (HDS), for outcomes of artificial insemination by husband (AIH) remains controversial. This study aims to evaluate the correlations between SCSA parameters and male aging as well as other routine semen parameters, and explore their prognostic powers on AIH outcomes of the Chinese infertile couples. A total of 809 AIH cycles were retrospectively analyzed. The results showed that DFI in the age groups35 years were significantly lower than that in the age groups ≥ 35 years (P0.001). Meanwhile, there was no statistical difference in HDS between the age groups (P = 0.063). DFI and HDS are negatively correlated with most routine semen parameters (all P0.05). The chi-square and generalized linear model tests indicated that neither DFI nor HDS influenced the clinical pregnancy rate of AIH. In summary, this study found that aging is a critical factor leading to increased sperm DFI but not HDS. DFI and HDS are negatively correlated with most semen parameters but do not significantly influence AIH outcomes.
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- 2021
15. [Clinical practice guidelines for the diagnosis of regions of homozygosity and uniparental disomy]
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Lifen, Zhu, Huimin, Zhang, Zhihua, Li, Weiqiang, Liu, and Xiaofang, Sun
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Genomic Imprinting ,Practice Guidelines as Topic ,Homozygote ,Gene Expression ,Humans ,Uniparental Disomy - Abstract
The overall prevalence of uniparental disomy (UPD) across all chromosomes was estimated to be around one birth in 2000. To date, more than 4170 UPD cases have been registered. UPD for chromosomes 6, 7, 11, 14, 15, and 20 can result in clinically recognizable imprinting disorders due to abnormal levels of imprinted gene expression. For other chromosomes, the clinical consequences associated with UPD are not apparent, unless when a recessive genetic disorder is unmasked by UPD or regions of homozygosity (ROH). A clinical practice guideline will assist in strengthening the precise analysis and interpretation of the clinical significance of ROH/UPD. This guideline summarizes the conception, mechanism and clinical consequences of ROH/UPD, as well as the principles for data analysis, with an aim to standardize the clinical application and data interpretation.
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- 2021
16. Quantitative assessment of the habitat quality dynamics in Yellow River Basin, China
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Zemeng Fan, Yanan Song, Meng Wang, and Xiaofang Sun
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China ,Conservation of Natural Resources ,geography ,geography.geographical_feature_category ,Biodiversity ,Drainage basin ,General Medicine ,Land cover ,Management, Monitoring, Policy and Law ,Structural basin ,Spatial distribution ,Pollution ,Ecosystem services ,Habitat destruction ,Rivers ,Habitat ,Humans ,Environmental science ,Physical geography ,Ecosystem ,Environmental Monitoring ,General Environmental Science - Abstract
Habitat quality is an important indicator for measuring regional biodiversity and ecosystem service value. A change in habitat quality is the direct result of the interaction between human activities and the natural environment. In this study, the Integrated Valuation of Ecosystem Services and Trade-offs (InVEST) model was used to evaluate the habitat quality of the Yellow River Basin (YRB) from 1980 to 2018. We further analyzed the quantity and spatial transfer status of habitat quality quantitatively using the Geo-informatic Tupu method. The results show that the habitat degradation degree under human disturbance showed a trend of increasing first and then decreasing, with values of 0.0196 in 1980, 0.0200 in 2000, and 0.0199 in 2018. In addition, it presents two ring structures: light-severe-high-moderate and light-moderate-high-severe in space. The overall level of habitat quality in the basin is relatively good, but there is a trend of decline, which are 0.6091, 0.6069, and 0.6049 in the three stages respectively. The spatial distribution of habitat quality showed a pattern of high in the middle and low on both sides. The habitat quality has been restored in some areas. The transition between good and medium and good and excellent in the Tupu change units of the habitat quality grade is the most intense. Both stages are mainly the transformation from high-grade to low-grade habitat quality, but there is a trend of gradual improvement. The findings could have theoretical support and policy implications for the maintenance of biodiversity and the protection of the natural environment in the Yellow River Basin.
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- 2021
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17. Genetic associations of docetaxel‐based chemotherapy‐induced myelosuppression in Chinese Han population
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Xuecai Niu, Cong Huai, Suli Zhang, Mo Li, Lu Shen, Li Jia, Shengying Qin, Yedong Liu, Wei Zhou, Di Zhang, Liang Guo, Xiaofang Sun, Luan Chen, Zhiliang Cong, Weihua Ren, Jingsong Ma, Chenxi Zhou, Keli Su, Shengui Zhang, and Guorong Li
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Male ,Oncology ,medicine.medical_specialty ,CYP2D6 ,medicine.medical_treatment ,Antineoplastic Agents ,Single-nucleotide polymorphism ,Docetaxel ,Polymorphism, Single Nucleotide ,030226 pharmacology & pharmacy ,03 medical and health sciences ,0302 clinical medicine ,Asian People ,Bone Marrow ,Neoplasms ,Internal medicine ,medicine ,Humans ,Genetic Predisposition to Disease ,Pharmacology (medical) ,030212 general & internal medicine ,Genotyping ,Aged ,Pharmacology ,Chemotherapy ,Multifactor dimensionality reduction ,business.industry ,Cancer ,Middle Aged ,medicine.disease ,Female ,business ,Biomarkers ,Adverse drug reaction ,medicine.drug - Abstract
WHAT IS KNOWN AND OBJECTIVE Myelosuppression, an adverse drug reaction (ADR), often causes medical treatment termination in cancer patients. It has been known that genetic components, such as single-nucleotide polymorphisms (SNPs), influence the risk of myelosuppression at the individual-patient level. However, due to ethnic variation in frequency of genetic polymorphisms, results reported in Caucasian patients may not be generalizable to the Chinese Han population. Until now, few researches on myelosuppression included Chinese Han patients. In this study, we conducted a systematic study of potential biomarkers for docetaxel-induced myelosuppression in Han Chinese patients. METHODS We examined 61 SNPs in 36 genes that code for drug transporters, metabolism enzymes, nuclear receptors and DNA repair pathway in 110 Chinese Han patients receiving docetaxel-based chemotherapy. Genotyping was conducted using the Sequenom MassARRAY system. Significant SNPs were identified by logistic regression, and gene-gene interactions were investigated by generalized multifactor dimensionality reduction (GMDR) analysis. RESULTS AND DISCUSSION Our results revealed that 11 SNPs in nine genes (SLC15A1, SLCO1A2, CYP2D6, FMO3, UGT1A1, NAT2, SULT2A1, PXR and HNF4α) were associated with docetaxel-induced myelosuppression. GMDR analyses suggested that a 3-locus model: SLC15A1 rs2297322-PXR rs3732359-FMO3 rs2266782 was an appropriate predictive model of docetaxel-induced myelosuppression (P = .017, Testing Bal.Acc = 0.653, CV Consistency = 10/10). WHAT IS NEW AND CONCLUSION Our findings suggest multiple novel predictive biomarkers of docetaxel-induced myelosuppression: SLC15A1 rs2297322, PXR rs3732359 and FMO3 rs2266782. These discoveries should help in advancing future personalized therapy of docetaxel-based chemotherapy specific to Chinese Han patients.
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- 2019
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18. Efficient gene correction of an aberrant splice site in β‐thalassaemia iPSCs by CRISPR/Cas9 and single‐strand oligodeoxynucleotides
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Shou-Heng Lin, Ding Wang, Lina He, Yinghong Yang, Zeyu Xiong, Yingjun Xie, Xiaofang Sun, Diyu Chen, Dian Lu, Yanting Xue, Yi Yang, and Bing Song
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0301 basic medicine ,single‐stranded oligodeoxynucleotide ,HBB gene ,induced pluripotent stem cells ,Genetic enhancement ,RNA Splicing ,DNA, Single-Stranded ,beta-Globins ,Biology ,03 medical and health sciences ,0302 clinical medicine ,Genome editing ,secondary cleavage ,Exome Sequencing ,CRISPR ,Humans ,Induced pluripotent stem cell ,Gene ,CRISPR/Cas9 ,Genetics ,Gene Editing ,RNA Cleavage ,Cas9 ,beta-Thalassemia ,Palindrome ,Intron ,Cell Biology ,Original Articles ,Genetic Therapy ,β‐Thalassaemia ,Hematopoiesis ,030104 developmental biology ,Oligodeoxyribonucleotides ,gene correction ,030220 oncology & carcinogenesis ,Mutation ,Molecular Medicine ,Original Article ,RNA Splice Sites ,CRISPR-Cas Systems - Abstract
β‐thalassaemia is a prevalent hereditary haematological disease caused by mutations in the human haemoglobin β (HBB) gene. Among them, the HBB IVS2‐654 (C > T) mutation, which is in the intron, creates an aberrant splicing site. Bone marrow transplantation for curing β‐thalassaemia is limited due to the lack of matched donors. The clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR‐associated protein 9 (Cas9), as a widely used tool for gene editing, is able to target specific sequence and create double‐strand break (DSB), which can be combined with the single‐stranded oligodeoxynucleotide (ssODN) to correct mutations. In this study, according to two different strategies, the HBB IVS2‐654 mutation was seamlessly corrected in iPSCs by CRISPR/Cas9 system and ssODN. To reduce the occurrence of secondary cleavage, a more efficient strategy was adopted. The corrected iPSCs kept pluripotency and genome stability. Moreover, they could differentiate normally. Through CRISPR/Cas9 system and ssODN, our study provides improved strategies for gene correction of β‐Thalassaemia, and the expression of the HBB gene can be restored, which can be used for gene therapy in the future.
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- 2019
19. Downregulation of miR-146a inhibits influenza A virus replication by enhancing the type I interferon response in vitro and in vivo
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Ya Zhu, Fuming Zhang, Xiaofang Sun, and Wangsen Qin
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0301 basic medicine ,Down-Regulation ,Inflammation ,RM1-950 ,Lung injury ,Biology ,medicine.disease_cause ,Virus Replication ,03 medical and health sciences ,Mice ,Random Allocation ,0302 clinical medicine ,Downregulation and upregulation ,Interferon ,In vivo ,Chlorocebus aethiops ,medicine ,Influenza A virus ,Animals ,Humans ,Vero Cells ,Pharmacology ,A549 cell ,Innate immune system ,Antagomirs ,General Medicine ,Mice, Inbred C57BL ,miR-146a ,MicroRNAs ,030104 developmental biology ,HEK293 Cells ,A549 Cells ,030220 oncology & carcinogenesis ,Interferon Type I ,Cancer research ,Type I IFN response ,Therapeutics. Pharmacology ,medicine.symptom ,TRAF6 ,medicine.drug - Abstract
Albeit microRNAs (miRNAs) have become increasingly appreciated for their essential roles in innate immune responses to viral infections; however, it is unknown how host miRNAs regulate influenza A virus (IAV)-induced inflammation. The aim of our study was to investigate the role of miR-146a in IAV replication in vitro and in vivo. In vitro, we found miR-146a was significantly upregulated in A549 cells with IAV infection. Overexpression of miR-146a promoted IAV replication, while downregulation of miR-146a repressed replication. We found that miR-146a diminished type I interferon (IFN) responses by decreasing IFN-β production and IFN-stimulated gene (ISG) expression. Furthermore, we found the IFNs level and IAV replication regulated by miR-146a inhibitor was partially reversed by depletion of interferon receptor (IFNAR) 1 or 2. In addition, we found that miR-146a directly targets tumor necrosis factor receptor association factor 6 (TRAF6), which is involved in the production of type I IFN, and TRAF6 overexpression reversed the replication-promoting effect of miR-146a on IAV. In vivo, inhibition of miR-146a alleviated IAV-induced mice lung injury and promoted survival rates by promoting type I antiviral activities. It is, therefore, concluded that downregulation of miR-146a inhibits IAV replication by enhancing type I IFN response through its target gene TRAF6 in vitro and in vivo, suggesting miR-146a antagomir might be a potential therapeutic target during IAV infection.
- Published
- 2019
20. Chimeric CTLA4-CD28-CD3z T Cells Potentiate Antitumor Activity Against CD80/CD86–Positive B Cell Malignancies
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Shouheng Lin, Lin Cheng, Wei Ye, Shanglin Li, Diwei Zheng, Le Qin, Qiting Wu, Youguo Long, Simiao Lin, Suna Wang, Guohua Huang, Peng Li, Yao Yao, and Xiaofang Sun
- Subjects
0301 basic medicine ,lcsh:Immunologic diseases. Allergy ,Adoptive cell transfer ,Lymphoma, B-Cell ,CD3 Complex ,Immunology ,chemical and pharmacologic phenomena ,Immunotherapy, Adoptive ,03 medical and health sciences ,Mice ,0302 clinical medicine ,CD28 Antigens ,CD80 ,Immunology and Allergy ,Cytotoxic T cell ,Animals ,Humans ,CTLA-4 Antigen ,CD86 ,Original Research ,CTLA4 ,Tumor microenvironment ,Receptors, Chimeric Antigen ,Chemistry ,CD28 ,myeloid-derived suppressor cells ,Xenograft Model Antitumor Assays ,Chimeric antigen receptor ,CAR-T ,030104 developmental biology ,030220 oncology & carcinogenesis ,Myeloid-derived Suppressor Cell ,Cancer research ,immunotherapy ,lcsh:RC581-607 ,human activities - Abstract
The adoptive transfer of chimeric antigen receptor T (CAR T) cells have been recognized as a promising therapeutic strategy for the treatment of hematological malignancies; however, clinical success using CAR T cells for the treatment of solid tumors are still limited since the T-cell function is inhibited by negative signals in the microenvironment of solid tumors. CTLA4 is a well-known immune checkpoint molecule, thus we developed a novel CAR by converting this negative signal to positive signal. The CAR developed consists of the extracellular and transmembrane domains of CTLA4 and the cytoplasmic domains of CD28 and CD3z (CTLA4-CAR T). CTLA4-CAR T cells exhibited superior cytokine secreting activities and cytotoxic to tumor cells in vitro and in xenograft models. CTLA4-CAR T cells were found to accumulate in tumors and are toxic to myeloid-derived suppressor cells (MDSCs) without signs of severe GVHD and CRS in preclinical models. Thus, this chimeric CTLA4-CAR can enhance the antitumor activity of CAR T cells and shed light on the strategy of using armed CAR T cells to target the immunomodulatory tumor microenvironment.
- Published
- 2021
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21. Noninvasive prenatal testing for β-thalassemia by targeted nanopore sequencing combined with relative haplotype dosage (RHDO): a feasibility study
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Wang Yang, Weiqiang Liu, Longmei Zhang, Zeng Xiaojing, Min Chen, Li Sheng, Jiang Fuman, Yufan Li, Shuming Ouyang, Xiaofang Sun, JiaJia Xian, Du Bole, Fei Luo, Yinghong Yang, Yuhuan Xie, Zhang Chunsheng, and Guo Yulai
- Subjects
Parents ,Molecular biology ,Science ,Noninvasive Prenatal Testing ,Thalassemia ,Diseases ,Single gene ,Computational biology ,Biology ,Polymorphism, Single Nucleotide ,Article ,DNA sequencing ,Pregnancy ,Genetics ,medicine ,Humans ,Family ,Allele ,Multidisciplinary ,Molecular medicine ,beta-Thalassemia ,Biological techniques ,Haplotype ,High-Throughput Nucleotide Sequencing ,Amplicon ,medicine.disease ,Nanopore Sequencing ,genomic DNA ,Haplotypes ,Medicine ,Feasibility Studies ,Female ,Nanopore sequencing - Abstract
Noninvasive prenatal testing (NIPT) for single gene disorders remains challenging. One approach that allows for accurate detection of the slight increase of the maternally inherited allele is the relative haplotype dosage (RHDO) analysis, which requires the construction of parental haplotypes. Recently, the nanopore sequencing technologies have become available and may be an ideal tool for direct construction of haplotypes. Here, we explored the feasibility of combining nanopore sequencing with the RHDO analysis in NIPT of β-thalassemia. Thirteen families at risk for β-thalassemia were recruited. Targeted region of parental genomic DNA was amplified by long-range PCR of 10 kb and 20 kb amplicons. Parental haplotypes were constructed using nanopore sequencing and next generation sequencing data. Fetal inheritance of parental haplotypes was classified by the RHDO analysis using data from maternal plasma DNA sequencing. Haplotype phasing was achieved in 12 families using data from 10 kb library. While data from the 20 kb library gave a better performance that haplotype phasing was achieved in all 13 families. Fetal status was correctly classified in 12 out of 13 families. Thus, targeted nanopore sequencing combined with the RHDO analysis is feasible to NIPT for β-thalassemia.
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- 2021
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22. A Rare Case of Hb H Disease and Systemic Lupus Erythematosus
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Dong-Zhi Li, Xiaofang Sun, Qi-Yin Lin, Shu Kong, Wei-qiang Liu, and Di-Yu Chen
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medicine.medical_specialty ,Anemia ,business.industry ,Thalassemia ,Biochemistry (medical) ,Clinical Biochemistry ,Hematology ,medicine.disease ,Gastroenterology ,immune system diseases ,hemic and lymphatic diseases ,Internal medicine ,Rare case ,medicine ,Hb h disease ,Humans ,Lupus Erythematosus, Systemic ,In patient ,Female ,Severe hemolytic anemia ,skin and connective tissue diseases ,business ,Genetics (clinical) - Abstract
Anemia is common in patients with systemic lupus erythematosus (SLE). The association between thalassemia and SLE is rare. In this study, we report the first patient who was found to have a severe hemolytic anemia caused by combination of SLE and Hb H disease. The patient had a more severe presentation in the hematological system. Our case indicates that for a patient who was diagnosed with SLE and developed deterioration in her hematological cell lines, investigation of other possible coexisting causes would be warranted.
- Published
- 2021
23. CRISPR/Cas9-mediated β-globin gene knockout in rabbits recapitulates human β-thalassemia
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Bing Song, Yong Fan, Quanjun Zhang, Xiaoping Li, Xiaofang Sun, Yexing Xian, Han Wu, Zhanhui Ou, Xiangjin Kang, Bangzhu Chen, Liangxue Lai, Yi Yang, Shiqi Hu, and Yingjun Xie
- Subjects
0301 basic medicine ,ESC, embryonic stem cell ,Thalassemia ,Genetic enhancement ,beta-Globins ,MCV, mean corpuscular volume ,Biochemistry ,RDW, red cell distribution width ,Transcriptome ,Gene Knockout Techniques ,hemic and lymphatic diseases ,Gene expression ,CRISPR ,SSA, single-stranded annealing ,Gene Editing ,RBC, red blood cell ,Cell Differentiation ,Phenotype ,gene therapy ,Rabbits ,Genetic Engineering ,Research Article ,MCH, mean corpuscular hemoglobin ,Induced Pluripotent Stem Cells ,rabbit ,Biology ,03 medical and health sciences ,CRISPR/Cas ,genetic disease ,HCT, hematocrit ,medicine ,Animals ,Humans ,Molecular Biology ,Gene ,Hb, hemoglobin concentration ,030102 biochemistry & molecular biology ,Point mutation ,animal model ,beta-Thalassemia ,Cell Biology ,RET, reticulocyte ,hemoglobin ,medicine.disease ,Hematopoietic Stem Cells ,Molecular biology ,Disease Models, Animal ,030104 developmental biology ,β-thalassemia ,Mutation ,CRISPR-Cas Systems - Abstract
β-thalassemia, an autosomal recessive blood disorder that reduces the production of hemoglobin, is majorly caused by the point mutation of the HBB gene resulting in reduced or absent β-globin chains of the hemoglobin tetramer. Animal models recapitulating both the phenotype and genotype of human disease are valuable in the exploration of pathophysiology and for in vivo evaluation of novel therapeutic treatments. The docile temperament, short vital cycles, and low cost of rabbits make them an attractive animal model. However, β-thalassemia rabbit models are currently unavailable. Here, using CRISPR/Cas9-mediated genome editing, we point mutated the rabbit β-globin gene HBB2 with high efficiency and generated a β-thalassemia rabbit model. Hematological and histological analyses demonstrated that the genotypic mosaic F0 displayed a mild phenotype of anemia, and the heterozygous F1 exhibited typical characteristics of β-thalassemia. Whole-blood transcriptome analysis revealed that the gene expression was altered in HBB2-targeted when compared with WT rabbits. And the highly expressed genes in HBB2-targeted rabbits were enriched in lipid and iron metabolism, innate immunity, and hematopoietic processes. In conclusion, using CRISPR-mediated HBB2 knockout, we have created a β-thalassemia rabbit model that accurately recapitulates the human disease phenotype. We believe this tool will be valuable in advancing the investigation of pathogenesis and novel therapeutic targets of β-thalassemia and associated complications.
- Published
- 2021
24. Generation of a gene-corrected isogenic iPSC line (AHQUi001-A-1) from a patient with familial hypertriglyceridemia (FHTG) carrying a heterozygous p.C310R (c.928 T C) mutation in LPL gene using CRISPR/Cas9
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Yangang Wang, Xinhua Xiao, Xiaofang Sun, Xiang Zhou, Bingzi Dong, and Chen Wang
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0301 basic medicine ,Heterozygote ,Induced Pluripotent Stem Cells ,Biology ,medicine.disease_cause ,Hyperlipoproteinemia Type IV ,03 medical and health sciences ,0302 clinical medicine ,medicine ,CRISPR ,Humans ,Induced pluripotent stem cell ,Gene ,lcsh:QH301-705.5 ,Genetics ,Mutation ,Cas9 ,digestive, oral, and skin physiology ,nutritional and metabolic diseases ,Karyotype ,Heterozygote advantage ,Cell Biology ,General Medicine ,medicine.disease ,Familial hypertriglyceridemia ,030104 developmental biology ,lcsh:Biology (General) ,lipids (amino acids, peptides, and proteins) ,CRISPR-Cas Systems ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Mutations in the LPL gene lead to familial hypertriglyceridemia (FHTG) . We have previously generated an iPSC line (AHQUi001-A) from a FHTG patient with a heterozygous p.C310R (c.928 T > C) mutation in the LPL gene. Here we genetically corrected the C310R mutation in the LPL gene using CRISPR/Cas9 technology to generate AHQUi001-A-1, which demonstrates normal karyotype, morphology, pluripotency, and potential to differentiate towards three germ layers.
- Published
- 2021
25. [Research progress of iron metabolism in phenotype modification of β-thalassemia]
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Diyu, Chen and Xiaofang, Sun
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Iron Overload ,Phenotype ,Iron ,Research ,beta-Thalassemia ,Humans - Abstract
β-thalassemia is a type of inherited hemolytic anemia caused by decreased globin production due to defect of the HBB gene. The pathogenesis of the disease is imbalance of α/β globin chains. The excess of α-globin chains will form hemichromes which can damage red blood cell membranes and lead to hemolysis, ineffective erythropoiesis, and secondary iron overload. Iron overload in turn can cause complications such as growth retardation, liver cirrhosis, cardiac insufficiency, and aggravate the disease phenotype. In recent decades, genes participating in iron metabolism have been discovered, and the mechanism of iron metabolism in the development of thalassemia has gradually been elucidated. Subsequently, by manipulating the expression of key genes in iron metabolism such as hepcidin and transferrin receptor, researchers have revealed that iron restriction can improve ineffective hematopoiesis and iron overload, which may provide a potential approach for the treatment of thalassemia. This article reviews the progress of research on iron metabolism-related genes and related pathways in β-thalassemia.
- Published
- 2021
26. Myeloid-derived suppressor cells promote lung cancer metastasis by CCL11 to activate ERK and AKT signaling and induce epithelial-mesenchymal transition in tumor cells
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Shouheng, Lin, Xuchao, Zhang, Guohua, Huang, Lin, Cheng, Jiang, Lv, Diwei, Zheng, Simiao, Lin, Suna, Wang, Qiting, Wu, Youguo, Long, Baiheng, Li, Wei, Wei, Pentao, Liu, Duanqing, Pei, Yangqiu, Li, Zhesheng, Wen, Shuzhong, Cui, Peng, Li, Xiaofang, Sun, Yilong, Wu, and Yao, Yao
- Subjects
Chemokine CCL11 ,Epithelial-Mesenchymal Transition ,Lung Neoplasms ,MAP Kinase Signaling System ,Myeloid-Derived Suppressor Cells ,Xenograft Model Antitumor Assays ,Gene Expression Regulation, Neoplastic ,Mice ,Cell Movement ,Cell Line, Tumor ,Animals ,Humans ,Neoplasm Metastasis ,Cell Proliferation ,Signal Transduction - Abstract
Myeloid-derived suppressor cells (MDSCs) suppress antitumor immune activities and facilitate cancer progression. Although the concept of immunosuppressive MDSCs is well established, the mechanism that MDSCs regulate non-small cell lung cancer (NSCLC) progression through the paracrine signals is still lacking. Here, we reported that the infiltration of MDSCs within NSCLC tissues was associated with the progression of cancer status, and was positively correlated with the Patient-derived xenograft model establishment, and poor patient prognosis. Intratumoral MDSCs directly promoted NSCLC metastasis and highly expressed chemokines that promote NSCLC cells invasion, including CCL11. CCL11 was capable of activating the AKT and ERK signaling pathways to promote NSCLC metastasis through the epithelial-mesenchymal transition (EMT) process. Moreover, high expression of CCL11 was associated with a poor prognosis in lung cancer as well as other types of cancer. Our findings underscore that MDSCs produce CCL11 to promote NSCLC metastasis via activation of ERK and AKT signaling and induction of EMT, suggesting that the MDSCs-CCL11-ERK/AKT-EMT axis contains potential targets for NSCLC metastasis treatment.
- Published
- 2020
27. Identification of compound mutations of SLC12A3 gene in a Chinese pedigree with Gitelman syndrome exhibiting Bartter syndrome-liked phenotypes
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Yangang Wang, Ying Chen, Wenjuan Zhao, Bingzi Dong, Fang Wang, Xiaofang Sun, Yuhang Zhao, and Xinying Liu
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Adult ,Male ,Proband ,China ,medicine.medical_specialty ,Genotype ,Hypercalciuria ,Water-Electrolyte Imbalance ,030232 urology & nephrology ,Hypokalemia ,030204 cardiovascular system & hematology ,lcsh:RC870-923 ,Bartter syndrome ,Hypocalciuria ,Hypomagnesemia ,03 medical and health sciences ,0302 clinical medicine ,Renal tubular dysfunction ,Renal potassium wasting ,Internal medicine ,medicine ,Humans ,Magnesium ,Solute Carrier Family 12, Member 3 ,Aged ,business.industry ,Bartter Syndrome ,Alkalosis ,Middle Aged ,Gitelman syndrome ,lcsh:Diseases of the genitourinary system. Urology ,medicine.disease ,Pedigree ,Renal Elimination ,Phenotype ,Endocrinology ,Nephrology ,Mutation ,Female ,SLC12A3 ,medicine.symptom ,business ,Research Article - Abstract
Background Gitelman syndrome is a rare salt-losing renal tubular disorder associated with mutation of SLC12A3 gene, which encodes the Na-Cl co-transporter (NCCT). Gitelman syndrome is characterized by hypokalemia, metabolic alkalosis, hypomagnesemia, hypocalciuria, and renin-angiotensin-aldosterone system (RAAS) activation. Different SLC12A3 variants may lead to phenotypic variability and severity. Methods In this study, we reported the clinical features and genetic analysis of a Chinese pedigree diagnosed with Gitelman syndrome. Results The proband exhibited hypokalaemia, hypomagnesemia, metabolic alkalosis, but hypercalciuria and kidney stone formation. The increased urinary calcium excretion made it confused to Bartter syndrome. The persistent renal potassium wasting resulted in renal tubular lesions, and might affect urinary calcium reabsorption and excretion. Genetic analysis revealed mutations of SLC12A3 gene with c.433C > T (p.Arg145Cys), c.1077C > G (p.Asn359Lys), and c.1666C > T (p.Pro556Ser). Potential alterations of structure and function of NCCT protein due to those genetic variations of SLC12A3 are predicted. Interestingly, one sibling of the proband carried the same mutant sites and exhibited similar clinical features with milder phenotypes of hypokalemia and hypomagnesemia, but hypocalciuria rather than hypercalciuria. Family members with at least one wild type copy of SLC12A3 had normal biochemistry. With administration of spironolactone, potassium chloride and magnesium supplement, the serum potassium and magnesium were maintained within normal ranges. Conclusions In this study, we identified compound mutations of SLC12A3 associated with varieties of clinical features. Further efforts are needed to investigate the diversity in clinical manifestations of Gitelman syndrome and its correlation with specific SLC12A3 mutations.
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- 2020
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28. Generation of the induced pluripotent stem cell(iPSC) line (AHQUi001-A) from a patient with familial hypertriglyceridemia (FHTG) carrying a heterozygous p.C310R (c.928 T C) mutation in LPL gene
- Author
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Xiang Zhou, Bingzi Dong, Jingwei Chi, Xinhua Xiao, Xiaofang Sun, and Yangang Wang
- Subjects
0301 basic medicine ,Male ,medicine.medical_specialty ,Heterozygote ,Induced Pluripotent Stem Cells ,Biology ,medicine.disease_cause ,Peripheral blood mononuclear cell ,Hyperlipoproteinemia Type IV ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Internal medicine ,medicine ,Humans ,Induced pluripotent stem cell ,lcsh:QH301-705.5 ,Mutation ,Lipoprotein lipase ,Triglyceride ,Cell Biology ,General Medicine ,Middle Aged ,medicine.disease ,biology.organism_classification ,Sendai virus ,Familial hypertriglyceridemia ,030104 developmental biology ,Endocrinology ,lcsh:Biology (General) ,chemistry ,Leukocytes, Mononuclear ,lipids (amino acids, peptides, and proteins) ,Cellular model ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Familial hypertriglyceridemia (FHTG) is an autosomal dominant disorder of lipoprotein metabolism, partly caused by mutations in the LPL gene, which encodes for the lipoprotein lipase. LPL deficiency can impair triglyceride hydrolysis which causes elevated plasma triglyceride levels. An induced pluripotent stem cell (iPSC) line was generated from peripheral blood mononuclear cells (PBMCs) of a 53 years-old male patient with FHTG who had a heterozygous p.C310R (c.928 T > C) mutation in the LPL gene based on the sendai virus delivery system. The cellular model will offer a powerful tool to investigate pathogenic mechanisms in FHTG and to develop a treatment for FHTG.
- Published
- 2020
29. Establishment of peripheral blood mononuclear cell-derived humanized lung cancer mouse models for studying efficacy of PD-L1/PD-1 targeted immunotherapy
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Shouheng Lin, Xu-Chao Zhang, Xueming Qian, Su Cao, Duanqing Pei, Cheng Lin, Yuchuan Jiang, Huihui Yao, Zhenfeng Zhang, Zhen Li, Suna Wang, Yiren Xiao, Guohua Huang, Pentao Liu, Baiheng Li, Yi-Long Wu, Wei Wei, Qiting Wu, Lin Simiao, Qiuhua Deng, Yao Yao, Peng Li, Xiaofang Sun, Zhe-Sheng Wen, Yang Li, and Shuzhong Cui
- Subjects
0301 basic medicine ,Lung Neoplasms ,medicine.medical_treatment ,Immune checkpoint inhibitors ,Programmed Cell Death 1 Receptor ,Immunology ,Mice, SCID ,Peripheral blood mononuclear cell ,B7-H1 Antigen ,Targeted immunotherapy ,03 medical and health sciences ,0302 clinical medicine ,Mice, Inbred NOD ,Cell Line, Tumor ,Report ,PD-L1 ,medicine ,Animals ,Humans ,Immunology and Allergy ,Lung cancer ,Cells, Cultured ,Tumor xenograft ,Mice, Knockout ,biology ,business.industry ,Immunotherapy ,Hematopoietic Stem Cells ,medicine.disease ,Xenograft Model Antitumor Assays ,Disease Models, Animal ,030104 developmental biology ,030220 oncology & carcinogenesis ,Leukocytes, Mononuclear ,Cancer research ,biology.protein ,business - Abstract
Animal models used to evaluate efficacies of immune checkpoint inhibitors are insufficient or inaccurate. We thus examined two xenograft models used for this purpose, with the aim of optimizing them. One method involves the use of peripheral blood mononuclear cells and cell line-derived xenografts (PBMCs-CDX model). For this model, we implanted human lung cancer cells into NOD-scid-IL2Rg−/− (NSI) mice, followed by injection of human PBMCs. The second method involves the use of hematopoietic stem and progenitor cells and CDX (HSPCs-CDX model). For this model, we first reconstituted the human immune system by transferring human CD34+ hematopoietic stem and progenitor cells (HSPCs-derived humanized model) and then transplanted human lung cancer cells. We found that the PBMCs-CDX model was more accurate in evaluating PD-L1/PD-1 targeted immunotherapies. In addition, it took only four weeks with the PBMCs-CDX model for efficacy evaluation, compared to 10–14 weeks with the HSPCs-CDX model. We then further established PBMCs-derived patient-derived xenografts (PDX) models, including an auto-PBMCs-PDX model using cancer and T cells from the same tumor, and applied them to assess the antitumor efficacies of anti-PD-L1 antibodies. We demonstrated that this PBMCs-derived PDX model was an invaluable tool to study the efficacies of PD-L1/PD-1 targeted cancer immunotherapies. Overall, we found our PBMCs-derived models to be excellent preclinical models for studying immune checkpoint inhibitors.
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- 2018
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30. CRISPR/Cas9-Targeted Deletion of Polyglutamine in Spinocerebellar Ataxia Type 3-Derived Induced Pluripotent Stem Cells
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Xiaofang Sun, Yuchang Chen, Yexing Xian, Yi Yang, Bing Song, Zhanhui Ou, Haoxian Li, Zeyu Xiong, Yuhuan Xie, Shuming Ouyang, and Yingjun Xie
- Subjects
Adult ,0301 basic medicine ,congenital, hereditary, and neonatal diseases and abnormalities ,Induced Pluripotent Stem Cells ,Mutant ,Biology ,Pathogenesis ,03 medical and health sciences ,0302 clinical medicine ,Neural Stem Cells ,Genome editing ,medicine ,Humans ,CRISPR ,Ataxin-3 ,Induced pluripotent stem cell ,Cells, Cultured ,Gene Editing ,Cas9 ,RNA ,Cell Differentiation ,Machado-Joseph Disease ,Cell Biology ,Hematology ,medicine.disease ,Cell biology ,Repressor Proteins ,030104 developmental biology ,Spinocerebellar ataxia ,Female ,CRISPR-Cas Systems ,Peptides ,Trinucleotide Repeat Expansion ,Gene Deletion ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Spinocerebellar ataxia type 3 (SCA3) is caused by an abnormal expansion of the cytosine-adenine-guanine (CAG) triplet in ATXN3, which translates into a polyglutamine (polyQ) tract within ataxin-3 (ATXN3) protein. Although the pathogenic mechanisms remain unclear, it is well established that expression of mutant forms of ATXN3 carrying an expanded polyQ domain are involved in SCA3 pathogenesis, and several strategies to suppress mutant ATXN3 have shown promising potential for SCA3 treatment. In this study, we described successful clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9-mediated deletion of the expanded polyQ-encoding region of ATXN3 in induced pluripotent stem cells (iPSCs) derived from a SCA3 patient, and these patient-specific iPSCs retained pluripotency and neural differentiation following expanded polyQ deletion. Furthermore, the ubiquitin-binding capacity of ATXN3 was retained in the neural cells differentiated from the corrected iPSCs. For the first time, this work provides preliminary data for gene editing by CRISPR/Cas9 in SCA3, and demonstrates the feasibility of using a single-guide RNA pair to delete the expanded polyQ-encoding region of ATXN3, suggesting the potential efficacy of this method for future therapeutic application.
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- 2018
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31. Hirschsprung\'s Disease-Related Giant Sigmoid Volvulus Complicated by Refractory Hypertension in an Elderly Man
- Author
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Yiyu Shen, Yawei Yu, Shaohan Wu, and Xiaofang Sun
- Subjects
Male ,Abdominal pain ,medicine.medical_specialty ,Constipation ,Abdominal compartment syndrome ,Drug Resistance ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Hirschsprung Disease ,Pathological ,Hirschsprung's disease ,Antihypertensive Agents ,Aged, 80 and over ,Sigmoid Diseases ,business.industry ,Sigmoid colon ,Articles ,General Medicine ,Abdominal distension ,medicine.disease ,Surgery ,Blood pressure ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Hypertension ,030211 gastroenterology & hepatology ,medicine.symptom ,business ,Intestinal Volvulus - Abstract
Patient: Male, 82 Final Diagnosis: Hirschsprung’s disease-related sigmoid volvulus complicated with refractory hypertension Symptoms: Constipation • moderate abdominal pain and progressive abdominal distension • hypertension Medication: Antihypertension medication Clinical Procedure: CT scan • Hartmann’s procedure Specialty: General Surgery Objective: Rare disease Background: Sigmoid volvulus (SV) is a life-threatening condition occasionally seen in adults. Adult Hirschsprung’s disease (HD)-related SV is rarely complicated by difficult-to-control hypertension. In this report we present the case of an elderly man with a rare constellation of HD, SV, and refractory hypertension. Case Report: An 82-year-old man had long-term constipation, moderate abdominal pain, and progressive abdominal distension. A CT scan revealed the typical “coffee bean sign”. Blood pressure was abnormal high. Subsequently, the patient’s condition deteriorated. Therefore, he underwent a Hartmann’s procedure. A giant and redundant sigmoid colon (length more than 60 cm, maximal diameter about 15 cm) was demonstrated to be the cause of SV during the process of surgery. Moreover, abdominal compartment syndrome caused by SV resulted in his high and refractory blood pressure (BP). Postoperative pathological results revealed HD in his sigmoid colon. Conclusions: SV is rarely combined with conditions like refractory hypertension or HD among the elderly. Clinical features of SV typically present with long-term constipation, severe abdominal pain, and progressive abdominal distension. The “coffee bean sign” could be observed in imaging examinations. It is important to note that the management of SV is to relieve the obstruction and prevent recurrence, no matter which therapy is used in elderly patients with Hirschsprung’s disease.
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- 2018
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32. Prevalence and genetic characteristics of 4CMenB and rLP2086 vaccine candidates among Neisseria meningitidis serogroup B strains, China
- Author
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Jing Lv, Xiaofang Sun, Li Xu, Bingqing Zhu, Yuan Gao, Zhujun Shao, Fenglin Shi, Aiyu Zhang, and Zheng Xu
- Subjects
0301 basic medicine ,China ,Lineage (genetic) ,Genotype ,Sequence analysis ,Meningococcal Vaccines ,Neisseria meningitidis, Serogroup B ,Biology ,Serogroup ,DNA sequencing ,03 medical and health sciences ,0302 clinical medicine ,Prevalence ,Humans ,030212 general & internal medicine ,Typing ,Geography, Medical ,Gene ,Phylogeny ,Genetics ,General Veterinary ,General Immunology and Microbiology ,Neisseria meningitidis serogroup B ,Public Health, Environmental and Occupational Health ,Genetic Variation ,Meningococcal Infections ,030104 developmental biology ,Infectious Diseases ,Molecular Medicine ,Multilocus sequence typing ,Multilocus Sequence Typing - Abstract
Objective To systematically investigate the prevalence and genetic characteristics of 4CMenB and rLP2086 vaccine candidates among Neisseria meningitidis serogroup B (NmB) in China. Methods A total of 485 NmB strains isolated in 29 provinces of China between 1968 and 2016 were selected from the culture collection of the national reference laboratory according to the isolation year, location, and source. Multi-locus sequence typing (MLST) and porA gene sequencing were performed on all 485 study strains; PCR was used to detect the fHbp, nadA, and nhba gene of 432 strains; positive amplification products from the fHbp and nadA genes from all strains, as well as those of the nhba gene from 172 representative strains, were sequenced. Results MLST results showed that the predominant (putative) clonal complexes (CCs) of NmB isolates have changed over time in China. While strains that could not be assigned to existing (p)CCs were the biggest proportion, CC4821 was the most prevalent lineage (36.0%) since 2005. PCR and sequence analysis revealed that the 4CMenB and rLP2086 vaccine candidates were highly diverse. Respectively, 152 PorA genotypes and 83 VR2 sequences were identified with significant diversity within a single CC; the complete nadA gene was found in ten of 432 study strains; fHbp was present in most strains (422/432) with variant 2 predominating (82.9%) in both patient- and carrier- derived isolates; almost all strains harbored the nhba gene while sequences were diverse. Conclusions With regards to clonal lineages and vaccine candidate proteins, NmB isolates from China were generally diverse. Further studies should be performed to evaluate the cross-protection of present vaccines against Chinese NmB strains.
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- 2018
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33. Complex interactions between thalassemia defective alleles compromise screening and cause severe anemia in a Chinese family
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Dong-Zhi Li, Fan Jiang, Xiaofang Sun, Sha Liu, and Lv-Ying Huang
- Subjects
Male ,Compromise ,media_common.quotation_subject ,Thalassemia ,Clinical Biochemistry ,MEDLINE ,Bioinformatics ,Severe anemia ,03 medical and health sciences ,0302 clinical medicine ,Asian People ,Humans ,Medicine ,Family ,Allele ,Chinese family ,Alleles ,media_common ,business.industry ,Biochemistry (medical) ,Anemia ,Hematology ,General Medicine ,medicine.disease ,030220 oncology & carcinogenesis ,Female ,business ,030215 immunology - Published
- 2018
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34. Targeted elimination of mutant mitochondrial DNA in MELAS-iPSCs by mitoTALENs
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Xiaoping Li, Jiangyun Peng, Quanjun Zhang, Yali Liu, Han Wu, Ping Liu, Yi Yang, Tianjie Li, Yanhui Liang, Xiaofang Sun, Ying Lian, Yaoyong Chen, Xiumei Zhen, Boon Seng Soh, Qian Yu, Tao Tan, Geng An, Qingfeng Chen, Ting Lan, Xiangjin Kang, Yang Yu, Rong Li, Zhenglai Ma, and Yong Fan
- Subjects
0301 basic medicine ,Mitochondrial encephalomyopathy ,Male ,Mitochondrial DNA ,Mitochondrial disease ,Mutant ,Induced Pluripotent Stem Cells ,lcsh:Animal biochemistry ,iPSCs ,Mitochondrion ,Biology ,Biochemistry ,DNA, Mitochondrial ,Germline ,03 medical and health sciences ,Mice ,TALEN ,Drug Discovery ,medicine ,MELAS Syndrome ,Animals ,Humans ,lcsh:QH573-671 ,lcsh:QP501-801 ,Transcription activator-like effector nuclease ,lcsh:Cytology ,Cell Biology ,medicine.disease ,Heteroplasmy ,Cell biology ,Mitochondria ,030104 developmental biology ,MELAS ,Mutation ,Biotechnology ,Research Article ,Microsatellite Repeats - Abstract
Mitochondrial diseases are maternally inherited heterogeneous disorders that are primarily caused by mitochondrial DNA (mtDNA) mutations. Depending on the ratio of mutant to wild-type mtDNA, known as heteroplasmy, mitochondrial defects can result in a wide spectrum of clinical manifestations. Mitochondria-targeted endonucleases provide an alternative avenue for treating mitochondrial disorders via targeted destruction of the mutant mtDNA and induction of heteroplasmic shifting. Here, we generated mitochondrial disease patient-specific induced pluripotent stem cells (MiPSCs) that harbored a high proportion of m.3243A>G mtDNA mutations and caused mitochondrial encephalomyopathy and stroke-like episodes (MELAS). We engineered mitochondrial-targeted transcription activator-like effector nucleases (mitoTALENs) and successfully eliminated the m.3243A>G mutation in MiPSCs. Off-target mutagenesis was not detected in the targeted MiPSC clones. Utilizing a dual fluorescence iPSC reporter cell line expressing a 3243G mutant mtDNA sequence in the nuclear genome, mitoTALENs displayed a significantly limited ability to target the nuclear genome compared with nuclear-localized TALENs. Moreover, genetically rescued MiPSCs displayed normal mitochondrial respiration and energy production. Moreover, neuronal progenitor cells differentiated from the rescued MiPSCs also demonstrated normal metabolic profiles. Furthermore, we successfully achieved reduction in the human m.3243A>G mtDNA mutation in porcine oocytes via injection of mitoTALEN mRNA. Our study shows the great potential for using mitoTALENs for specific targeting of mutant mtDNA both in iPSCs and mammalian oocytes, which not only provides a new avenue for studying mitochondrial biology and disease but also suggests a potential therapeutic approach for the treatment of mitochondrial disease, as well as the prevention of germline transmission of mutant mtDNA. Electronic supplementary material The online version of this article (10.1007/s13238-017-0499-y) contains supplementary material, which is available to authorized users.
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- 2018
35. Generation of a homozygous ZBTB7A knockout human induced pluripotent stem line by CRISPR/Cas9 editing
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Bing Song, Dian Lu, Nengqing Liu, Xiaofang Sun, Yinghong Yang, Diyu Chen, Lifen Zhu, and Yi Cheng
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Gene Editing ,QH301-705.5 ,Mechanism (biology) ,DNA repair ,Induced Pluripotent Stem Cells ,Cell Biology ,General Medicine ,Biology ,Cell biology ,DNA-Binding Proteins ,Haematopoiesis ,Tumor progression ,Cell Line, Tumor ,Humans ,Gene silencing ,CRISPR ,CRISPR-Cas Systems ,Biology (General) ,Induced pluripotent stem cell ,Gene ,Transcription Factors ,Developmental Biology - Abstract
ZBTB7A plays important roles in several biological processes, including silencing of the fetal γ-globin genes, hematopoiesis, primed-to-naive transition, etc. Meanwhile, it is also associated with Oncogenic transformation and tumor progression. However, the mechanism of ZBTB7A function is not fully understood yet. Here, we generated a homozygous ZBTB7A knockout human induced pluripotent stem cell (iPSC) line, GZHMCi007-A by the CRISPR/Cas9-mediated homology-dependent DNA repair method. The iPSCs of ZBTB7A-/- established by us is a powerful tool for related research.
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- 2021
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36. Maternal chromium restriction induces insulin resistance in adult mice offspring through miRNA
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Xiaofang Sun, Fan Ping, Xinhua Xiao, Ming Li, Jia Zheng, Zhixin Wang, Tong Wang, Qian Zhang, Miao Yu, Xiaojing Wang, and Cuijuan Qi
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0301 basic medicine ,Blood Glucose ,Chromium ,Male ,medicine.medical_treatment ,Polymerase Chain Reaction ,Pregnancy ,Cluster Analysis ,Insulin ,Gene Regulatory Networks ,Oligonucleotide Array Sequence Analysis ,biology ,microRNA ,General Medicine ,Articles ,Fasting ,Hep G2 Cells ,Prenatal Exposure Delayed Effects ,Female ,Signal Transduction ,medicine.medical_specialty ,Offspring ,Carbohydrate metabolism ,03 medical and health sciences ,Insulin resistance ,Downregulation and upregulation ,Internal medicine ,Genetics ,medicine ,Animals ,Humans ,epigenetics ,Body Weight ,Computational Biology ,Reproducibility of Results ,medicine.disease ,Fold change ,Diet ,Mice, Inbred C57BL ,Insulin receptor ,MicroRNAs ,030104 developmental biology ,Endocrinology ,fetal programming ,Gene Ontology ,biology.protein ,Insulin Resistance ,maternal environment ,Homeostasis - Abstract
Increasing evidence suggests that undernutrition during the fetal period may lead to glucose intolerance, impair the insulin response and induce insulin resistance (IR). Considering the importance of chromium (Cr) in maintaining carbohydrate metabolism, the present study aimed to determine the effects of maternal low Cr (LC) on glucose metabolism in C57BL mice offspring, and the involved mechanisms. Weaned C57BL mice were born from mothers fed a control diet or LC diet, and were then fed a control or LC diet for 13 weeks. Subsequently, the liver microRNA (miRNA/miR) expression profile was analyzed by miRNA array analysis. A maternal LC diet increased fasting serum glucose (P
- Published
- 2017
37. Establishment of a congenital tooth agenesis related gene MSX1 knockout human embryonic stem cell lines by CRISPR-Cas9 technology
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Yongjin Li, Dajiang Qin, Xiaofang Sun, Xiaotong Cen, Wenwei Lian, Minghui Zhu, Baojian Liao, and Yanting Xue
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Male ,0301 basic medicine ,Human Embryonic Stem Cells ,Homeobox A1 ,Biology ,medicine.disease_cause ,Cell Line ,03 medical and health sciences ,stomatognathic system ,Human tooth development ,medicine ,Humans ,Gene ,lcsh:QH301-705.5 ,Gene knockout ,MSX1 Transcription Factor ,Genetics ,Mutation ,Cell Biology ,General Medicine ,Embryonic stem cell ,stomatognathic diseases ,030104 developmental biology ,Chromosome 4 ,lcsh:Biology (General) ,Odontogenesis ,Homeobox ,CRISPR-Cas Systems ,Developmental Biology - Abstract
Human MSX1 gene is mapped to chromosome 4 and encodes a 303aa homeobox protein MSX1. MSX1 expression appears during early tooth development of vertebrate embryogenesis. Mutations in this protein are related to human tooth anomalie, cleft lip and palate and congenital ectodermal dysplasia syndrome. Most of the confirmed pathogenic mutations are located in exon2 encoded homeobox domain. Here, we report the establishment of MSX1 gene knockout human embryonic stem (hES) cell lines by CRISPR-Cas9 technology. These cell lines provide good materials for further studies of the roles MSX1 plays in human tooth development and congenital tooth agenesis.
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- 2017
38. Generation of integration-free induced pluripotent stem cells (GZHMUi001-A) by reprogramming peripheral blood mononuclear cells from a 47, XXX syndrome patient
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Yexing Xian, Zhanhui Ou, Xiaofang Sun, Yanting Xue, Yuchang Chen, Shuming Ouyang, Yuhuan Xie, and Bing Song
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0301 basic medicine ,Induced Pluripotent Stem Cells ,Sex Chromosome Disorders of Sex Development ,Cell Culture Techniques ,Trisomy ,Syndrome patient ,Peripheral blood mononuclear cell ,Young Adult ,03 medical and health sciences ,medicine ,Humans ,Induced pluripotent stem cell ,lcsh:QH301-705.5 ,Sex Chromosome Aberrations ,X chromosome ,Chromosomes, Human, X ,biology ,Cell Biology ,General Medicine ,Cellular Reprogramming ,biology.organism_classification ,medicine.disease ,Sendai virus ,Premature ovarian failure ,030104 developmental biology ,lcsh:Biology (General) ,Immunology ,Leukocytes, Mononuclear ,Cancer research ,Female ,Reprogramming ,Developmental Biology - Abstract
47, XXX syndrome is one of several sex-chromosomal aneuploidies, and it has an incidence of approximately 1/1000 in newborn females. Because of heterogeneity in X-inactivation, these patients may exhibit a variety of clinical symptoms. Here, we report the generation of an integration-free human induced pluripotent stem cell line (GZHMUi001-A) by using Sendai virus to reprogram peripheral blood mononuclear cells from a 47, XXX syndrome patient with premature ovarian failure. This 47, XXX iPS cell line has characteristics of pluripotent stem cells and is a useful tool for the investigation of this X chromosome aneuploid disease.
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- 2017
39. Severe hypertriglyceridemia due to two novel loss-of-function lipoprotein lipase gene mutations (C310R/E396V) in a Chinese family associated with recurrent acute pancreatitis
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Yangang Wang, Xiaofang Sun, Yu Lun, Xu Hou, Ping Wang, and Jingwei Chi
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0301 basic medicine ,Male ,medicine.medical_specialty ,China ,acute pancreatitis ,hypertriglyceridemia ,Mutant ,DNA Mutational Analysis ,lipoprotein lipase ,030204 cardiovascular system & hematology ,Biology ,Compound heterozygosity ,medicine.disease_cause ,03 medical and health sciences ,Exon ,0302 clinical medicine ,compound heterozygosity ,Asian People ,Loss of Function Mutation ,Recurrence ,Internal medicine ,Chlorocebus aethiops ,medicine ,Missense mutation ,Animals ,Humans ,Family ,Lipoprotein lipase ,Mutation ,Hypertriglyceridemia ,digestive, oral, and skin physiology ,nutritional and metabolic diseases ,Middle Aged ,medicine.disease ,Lipids ,Familial hypertriglyceridemia ,030104 developmental biology ,Endocrinology ,Oncology ,Amino Acid Substitution ,Pancreatitis ,Acute Disease ,COS Cells ,lipids (amino acids, peptides, and proteins) ,Female ,mutation ,Tomography, X-Ray Computed ,Research Paper - Abstract
// Yu Lun 1, * , Xiaofang Sun 1, * , Ping Wang 1 , Jingwei Chi 1 , Xu Hou 1 and Yangang Wang 1 1 Department of Endocrinology and Metabolic Diseases, The Affiliated Hospital of Qingdao University, Qingdao, China * Yu Lun and Xiaofang Sun contributed equally to this work Correspondence to: Yangang Wang, email: wangyangang9111@126.com Xu Hou, email: lunyu9111@gmail.com Keywords: lipoprotein lipase, hypertriglyceridemia, mutation, acute pancreatitis, compound heterozygosity Received: November 16, 2016 Accepted: April 11, 2017 Published: May 10, 2017 ABSTRACT Lipoprotein lipase (LPL) is widely expressed in skeletal muscles, cardiac muscles as well as adipose tissue and involved in the catabolism of triglyceride. Herein we have systematically characterized two novel loss-of-function mutations in LPL from a Chinese family in which afflicted members were manifested by severe hypertriglyceridemia and recurrent pancreatitis. DNA sequencing revealed that the proband was a heterozygote carrying a novel c.T928C (p.C310R) mutation in exon 6 of the LPL gene. Another member of the family was detected to be a compound heterozygote who along with the c.T928C mutation also carried a novel missense mutation c.A1187T (p.E396V) in exon 8 of the LPL gene. Furthermore, COS-1 cells were transfected with lentiviruses containing the mutant LPL genes. While C310R markedly reduced the overall LPL protein level, COS-1 cells carrying E396V or double mutations contained similar overall LPL protein levels to the wild-type. The specific activity of the LPL mutants remained at comparable magnitude to the wild-type. However, few LPL were detected in the culture medium for the mutants, suggesting that both mutations caused aberrant triglyceride catabolism. More specifically, E396V and double mutations dampened the transport of LPL to the cell surface, while for the C310R mutation, reducing LPL protein level might be involved. By characterizing these two novel LPL mutations, this study has expanded our understanding on the pathogenesis of familial hypertriglyceridemia (FHTG).
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- 2017
40. HSPA5 Regulates Ferroptotic Cell Death in Cancer Cells
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Qiuhong Zhang, Shan Zhu, Michael T. Lotze, Xiaofang Sun, Rui Kang, Daolin Tang, and Herbert J. Zeh
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0301 basic medicine ,Antimetabolites, Antineoplastic ,Cancer Research ,Programmed cell death ,Activating Transcription Factor 4 ,Protein degradation ,Biology ,GPX4 ,Deoxycytidine ,Article ,Lipid peroxidation ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,Cell Line, Tumor ,Animals ,Humans ,Phospholipid-hydroperoxide glutathione peroxidase ,Endoplasmic Reticulum Chaperone BiP ,Heat-Shock Proteins ,Glutathione Peroxidase ,Cell Death ,ATF4 ,Phospholipid Hydroperoxide Glutathione Peroxidase ,Gemcitabine ,Cell biology ,Pancreatic Neoplasms ,030104 developmental biology ,Oncology ,chemistry ,Cancer cell ,Lipid Peroxidation ,Carcinoma, Pancreatic Ductal - Abstract
Ferroptosis is a form of regulated cell death driven by oxidative injury promoting lipid peroxidation, although detailed molecular regulators are largely unknown. Here, we show that heatshock 70-kDa protein 5 (HSPA5) negatively regulates ferroptosis in human pancreatic ductal adenocarcinoma (PDAC) cells. Mechanistically, activating transcription factor 4 (ATF4) resulted in the induction of HSPA5, which in turn bound glutathione peroxidase 4 (GPX4) and protected against GPX4 protein degradation and subsequent lipid peroxidation. Importantly, the HSPA5–GPX4 pathway mediated ferroptosis resistance, limiting the anticancer activity of gemcitabine. Genetic or pharmacologic inhibition of the HSPA5–GPX4 pathway enhanced gemcitabine sensitivity by disinhibiting ferroptosis in vitro and in both subcutaneous and orthotopic animal models of PDAC. Collectively, these findings identify a novel role of HSPA5 in ferroptosis and suggest a potential therapeutic strategy for overcoming gemcitabine resistance. Cancer Res; 77(8); 2064–77. ©2017 AACR.
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- 2017
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41. High-mobility group box 1 regulates cytoprotective autophagy in a mouse spermatocyte cell line (GC-2spd) exposed to cadmium
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Xiaohua Niu, Di Fan, Zhanhui Ou, Xiaofang Sun, Yaoyong Chen, Wenyin He, and Bing Song
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Male ,0301 basic medicine ,Apoptosis ,Transfection ,HMGB1 ,Cell Line ,Mice ,03 medical and health sciences ,Downregulation and upregulation ,Spermatocytes ,HMGB Proteins ,Autophagy ,Animals ,Humans ,Medicine ,Viability assay ,Nuclear protein ,Cytotoxicity ,biology ,business.industry ,General Medicine ,Cell biology ,Semen Analysis ,030104 developmental biology ,Cell culture ,Immunology ,biology.protein ,business ,Cadmium - Abstract
Cadmium (Cd) is an environmental and industrial pollutant that induces a broad spectrum of toxicological effects, influences a variety of human organs, and is associated with poor semen quality and male infertility. Increasing evidence demonstrates that Cd induces testicular germ cell apoptosis in rodent animals. However, the specific effect of Cd exposure on autophagy in germ cells is poorly understood. We investigate the role of high-mobility group box 1 protein (HMGB1), a ubiquitous nuclear protein, on Cd-evoked autophagy in a mouse spermatocyte cell line (GC-2spd). Our data have shown that autophagy was significantly elevated in GC-2spd cells exposed to Cd. Furthermore, there was a reduction in rapamycin (RAP)-mediated apoptosis. In addition, Cd exposure reduced cell viability, which is an effect that could be significantly inhibited by RAP treatment. These results indicate that autophagy appears to serve a positive function in reducing Cd-induced cytotoxicity. In addition, HMGB1 increased coincident with the processing of LC3-I to LC3-II. Thus, the upregulation of HMGB1 increases LC3-II levels. Our data suggest that HMGB1-induced autophagy appears to act as a defense/survival mechanism against Cd cytotoxicity in GC-2spd cells.
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- 2017
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42. Error consciousness predicts physiological response to an acute psychosocial stressor in men
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Xiaofang Sun, Li Wang, Guillén Fernández, Jianhui Wu, Liang Zhang, and Zhuxi Yao
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Adult ,Male ,medicine.medical_specialty ,China ,endocrine system ,Consciousness ,Hydrocortisone ,Endocrinology, Diabetes and Metabolism ,media_common.quotation_subject ,Stress-related disorders Donders Center for Medical Neuroscience [Radboudumc 13] ,Audiology ,050105 experimental psychology ,Developmental psychology ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Heart Rate ,Stress, Physiological ,130 000 Cognitive Neurology & Memory ,Heart rate ,medicine ,Trier social stress test ,Humans ,0501 psychology and cognitive sciences ,Saliva ,Social Behavior ,Biological Psychiatry ,media_common ,Endocrine and Autonomic Systems ,05 social sciences ,Stressor ,Cognition ,Electroencephalography ,Causality ,Psychiatry and Mental health ,Psychological stressor ,Psychology ,Psychosocial ,Neurocognitive ,030217 neurology & neurosurgery ,Stress, Psychological - Abstract
Contains fulltext : 177131.pdf (Publisher’s version ) (Closed access) There are substantial individual differences in the response towards acute stressor. The aim of the current study was to examine how the neural activity after an error response during a non-stressful state, prospectively predicts the magnitude of physiological stress response (e.g., cortisol response and heart rate) and negative affect elicited by a laboratory stress induction procedure in nonclinical participants. Thirty-seven healthy young male adults came to the laboratory for the baseline neurocognitive measurement on the first day during which they performed a Go/Nogo task with their electroencephalogram recorded. On the second day, they came again to be tested on their stress response using an acute psychosocial stress procedure (i.e., the Trier Social Stress Test, the TSST). Results showed that the amplitude of error positivity (Pe) significantly predicted both the heart rate and cortisol response towards the TSST. Our results suggested that baseline cognitive neural activity reflecting error consciousness could be used as a biological predictor of physiological response to an acute psychological stressor in men.
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- 2017
43. Colchicine causes prenatal cell toxicity and increases tetraploid risk
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Yingjun Xie, Xiaofang Sun, Qianying Pan, Ding Wang, Minyi Yan, and Yi Liang
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Chorionic villus cells ,Risk ,Cell Survival ,Tetraploid generation ,Cell ,Apoptosis ,Biology ,Gout Suppressants ,Cell cycle arrest ,Andrology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,lcsh:RA1190-1270 ,Pregnancy ,medicine ,Humans ,Colchicine ,Pharmacology (medical) ,Viability assay ,Cells, Cultured ,lcsh:Toxicology. Poisons ,030304 developmental biology ,Pharmacology ,0303 health sciences ,Cluster of differentiation ,Cell growth ,lcsh:RM1-950 ,Cell Cycle ,Mesenchymal stem cell ,Cell cycle ,Amniotic Fluid ,Amniotic fluid cells ,Tetraploidy ,lcsh:Therapeutics. Pharmacology ,medicine.anatomical_structure ,chemistry ,030220 oncology & carcinogenesis ,Toxicity ,Female ,Chorionic Villi ,Research Article - Abstract
Background Colchicine is a clinical medicine used for relief from gout and familial Mediterranean fever. Because of its toxic effects, intravenous injection of colchicine has been banned, but it is still widely administered orally. We assayed the toxic effects of colchicine in cultured primary chorionic villus cells and amniotic fluid cells to interpret its influence on the placenta and foetus. Methods Bright field record and cell count kit 8 were used to value cell viability. Flow cytometer was used to identify cells markers, cell cycle and cell apoptosis. G-banding was used for karyotype analysis for sample genetic and drug effect evaluation. Results Chorionic villus cells and amniotic fluid cells were characterized as mesenchymal cells that share most cell surface markers and have a similar response to colchicine. Colchicine did not induce a decline in cell viability at low concentrations but suppressed cell proliferation by arresting the cell cycle in the G2/M phase and increased the risk of tetraploid generation in a small subset of cases. Conclusions Our study revealed the results of a colchicine-induced toxicity test in prenatal cells and determined the anti-mitotic biologically functional dose and manner of administration that might reduce the risk of tetraploid generation.
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- 2019
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44. SPAG5-AS1 inhibited autophagy and aggravated apoptosis of podocytes via SPAG5/AKT/mTOR pathway
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Yujie Deng, Shuqin Chen, Jun Xu, Yi Wang, Xiaofang Sun, and Guoxiang Fu
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autophagy ,Transcription, Genetic ,SPAG5‐AS1 ,Apoptosis ,Cell Cycle Proteins ,AKT/mTOR ,SPAG5 ,Podocyte ,Downregulation and upregulation ,medicine ,Gene silencing ,Humans ,Diabetic Nephropathies ,Protein kinase B ,PI3K/AKT/mTOR pathway ,Cells, Cultured ,podocyte injury ,Competing endogenous RNA ,Chemistry ,Podocytes ,TOR Serine-Threonine Kinases ,diabetic nephropathy ,Autophagy ,Ubiquitination ,Cell Biology ,General Medicine ,Original Articles ,Cell biology ,Up-Regulation ,medicine.anatomical_structure ,Glucose ,RNA, Long Noncoding ,Original Article ,Chromatin immunoprecipitation ,Proto-Oncogene Proteins c-akt ,Ubiquitin Thiolesterase ,Signal Transduction - Abstract
Objectives Podocyte injury is a prediction marker of diabetic nephropathy (DN), and AKT/mTOR pathway–mediated inhibition of autophagy is widely reported to contribute to podocyte damage. Recent study stated that sperm‐associated antigen 5 (SPAG5) activated AKT/mTOR signalling in bladder urothelial carcinoma, indicating SPAG5 might regulate autophagy and play a role in podocyte damage. Materials and methods Apoptosis and autophagy of human podocytes (HPCs) were detected by flow cytometry and immunofluorescence (IF). Gene level was assessed by Western blot and RT‐qPCR. Molecular interactions were determined by pulldown, RNA immunoprecipitation (RIP), co‐immunoprecipitation (co‐IP), chromatin immunoprecipitation (ChIP) and luciferase reporter assays. Results SPAG5 mRNA and protein levels were upregulated under high glucose treatment in HPCs. Silencing SPAG5 reversed the increase of apoptosis and decrease of autophagy in high glucose–treated HPCs. Later, we found a long non‐coding RNA (lncRNA) SPAG5 antisense RNA1 (SPAG5‐AS1) as a neighbour gene to SPAG5. Mechanistically, YY1 transcriptionally upregulated SPAG5‐AS1 and SPAG5 in high glucose–treated podocytes. SPAG5‐AS1 acted as a competitive endogenous RNA (ceRNA) to regulate miR‐769‐5p/YY1 axis and induce SPAG5. SPAG5‐AS1 interacted with ubiquitin‐specific peptidase 14 (USP14) and leads to de‐ubiquitination and stabilization of SPAG5 protein. Conclusions This study revealed that SPAG5‐AS1 inhibited autophagy and aggravated apoptosis of podocytes via SPAG5/AKT/mTOR pathway, indicating SPAG5‐AS1/SPAG5 as a potential target for the alleviation of podocyte injury and offering new thoughts for the treatments of DN.
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- 2019
45. Male age is more critical to sperm DNA integrity than routine semen parameters in Chinese infertile males
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Qing Li, Xiaofang Sun, Li-Yuan Guo, Hua Zhou, and Min Liu
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Infertility ,Adult ,Male ,endocrine system ,Urology ,030232 urology & nephrology ,Motility ,Semen ,DNA Fragmentation ,Andrology ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Asian People ,medicine ,Humans ,Sperm motility ,Infertility, Male ,Retrospective Studies ,030219 obstetrics & reproductive medicine ,Sperm Count ,urogenital system ,business.industry ,Sperm dna ,Age Factors ,General Medicine ,Middle Aged ,medicine.disease ,Spermatozoa ,Fertility ,Male age ,Sperm Motility ,DNA fragmentation ,Abnormality ,business - Abstract
This retrospective study evaluated the correlation between the sperm DNA integrity results and infertile male age or sperm motility in 654 infertile men undergoing infertility evaluations from 2013 to 2016. The correlation between the results of sperm DNA integrity and male age was positive, while a negative correlation was detected between sperm DNA integrity and sperm motility in all subjects. According to age (≤30, 30-35 and ≥35), men with normozoospermia or abnormal semen parameters were, respectively, divided into groups 1, 2 and 3, or groups A, B and C. The sperm DNA fragmentation index (DFI) and DFI abnormality rates in groups 3 and C were highest among their respective cohorts. But they were not significantly different between groups within the same age range. Statistically significant differences were found in male age, progressive motility, as well as total motility between patients with normal DFIs and those with abnormal DFIs in group C, but not in group 3. Older (≥35 years) infertile men have increased sperm DNA fragmentation, independent of conventional semen parameters. Male age is more critical to sperm DNA integrity than routine semen parameters.
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- 2019
46. Generation of induced pluripotent stem cell line GZHMCi006-A from amniotic fluid-derived cells with deletion 14q syndrome
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Lili Du, Nengqing Liu, Bing Song, Dingya Cao, Yi Cheng, Jiajia Xian, Yi Liang, Xiaofang Sun, Hongmei Guan, and Huimin Zhang
- Subjects
0301 basic medicine ,Amniotic fluid ,QH301-705.5 ,Induced Pluripotent Stem Cells ,Prenatal diagnosis ,Biology ,03 medical and health sciences ,0302 clinical medicine ,Pregnancy ,Humans ,Biology (General) ,Induced pluripotent stem cell ,Gene ,Amniotic fluid cells ,Chromosome ,Syndrome ,Cell Biology ,General Medicine ,Amniotic Fluid ,Facial appearance ,030104 developmental biology ,Karyotyping ,Cancer research ,Female ,Chromosome Deletion ,Ipsc line ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
The deletions of the long arm of chromosome 14 involving the 14q24-q32 region have been identified as deletion 14q (del 14q) syndrome, but were rarely reported. The patients with del 14q syndrome are observed a peculiar facial appearance and neurological defects, but the molecular mechanisms were not clear. Here we generated a human iPSC line from the patient’s amniotic fluid cells with 24 Mb deletion in 14q24.3q32.31 which will serve as useful tools for studying the mechanism of del 14q syndrome and the genes involved, which will provide useful basic theory of prenatal diagnosis.
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- 2021
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47. Antiferroptotic activity of non-oxidative dopamine
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Yingpeng Peng, Borong Zhou, Rui Kang, Yangchun Xie, Ding Wang, Xiaofang Sun, and Daolin Tang
- Subjects
0301 basic medicine ,Cell Survival ,Dopamine ,Iron ,Biophysics ,Protein degradation ,Biology ,GPX4 ,Biochemistry ,Lipid peroxidation ,03 medical and health sciences ,chemistry.chemical_compound ,Dopamine receptor D5 ,medicine ,Dopamine receptor D4 ,Humans ,Neurotransmitter ,Molecular Biology ,Cells, Cultured ,Cell Death ,Dose-Response Relationship, Drug ,Dopaminergic ,Cell Biology ,Cell biology ,030104 developmental biology ,chemistry ,biology.protein ,Lipid Peroxidation ,Oxidation-Reduction ,medicine.drug - Abstract
Dopamine is a neurotransmitter that has many functions in the nervous and immune systems. Ferroptosis is a non-apoptotic form of regulated cell death that is involved in cancer and neurodegenerative diseases. However, the role of dopamine in ferroptosis remains unidentified. Here, we show that the non-oxidative form of dopamine is a strong inhibitor of ferroptotic cell death. Dopamine dose-dependently blocked ferroptosis in cancer (PANC1 and HEY) and non-cancer (MEF and HEK293) cells following treatment with erastin, a small molecule ferroptosis inducer. Notably, dopamine reduced erastin-induced ferrous iron accumulation, glutathione depletion, and malondialdehyde production. Mechanically, dopamine increased the protein stability of glutathione peroxidase 4, a phospholipid hydroperoxidase that protects cells against membrane lipid peroxidation. Moreover, dopamine suppressed dopamine receptor D4 protein degradation and promoted dopamine receptor D5 gene expression. Thus, our findings uncover a novel function of dopamine in cell death and provide new insight into the regulation of iron metabolism and lipid peroxidation by neurotransmitters.
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- 2016
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48. Implementation of a High-Resolution Single-Nucleotide Polymorphism Array in Analyzing the Products of Conception
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Xiaofang Sun, Huimin Zhang, Weiqiang Liu, Zhihua Li, Chenhong Wang, and Min Chen
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Male ,0301 basic medicine ,DNA Copy Number Variations ,Loss of Heterozygosity ,Single-nucleotide polymorphism ,Biology ,Polymorphism, Single Nucleotide ,Loss of heterozygosity ,03 medical and health sciences ,0302 clinical medicine ,Pregnancy ,medicine ,Humans ,SNP ,Copy-number variation ,Genetics (clinical) ,Oligonucleotide Array Sequence Analysis ,Chromosome Aberrations ,Genetics ,030219 obstetrics & reproductive medicine ,Genome, Human ,General Medicine ,Aneuploidy ,Abortion, Spontaneous ,030104 developmental biology ,medicine.anatomical_structure ,Products of conception ,Fertilization ,Chorionic villi ,Female ,Human genome ,SNP array - Abstract
Aims: To demonstrate the value of a whole-genome high-resolution single-nucleotide polymorphism (SNP) array for the elucidation of genetic causes underlying pregnancy loss. Methods: The SNP array combined with SNPs and oligonucleotide probes was used to examine 60 samples of products of conception, including chorionic villi, fetal parts, and fetal blood. Results: The SNP array yielded a 38.3% (23/60) abnormality rate. In addition to the most common aneuploidy, it detected 16.7% additional aberrations involving copy number variation, triploidy, loss of heterozygosity or low-level mosaicism. Conclusion: This whole-genome high-resolution SNP array not only provides copy number information but also identifies the heterozygosity status, which facilitates the discovery of the novel genetic alterations associated with pregnancy failure and improves the management of subsequent pregnancies.
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- 2016
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49. Autophagy promotes ferroptosis by degradation of ferritin
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Wen Hou, Herbert J. Zeh, Daolin Tang, Xinxin Song, Rui Kang, Yangchun Xie, Michael T. Lotze, and Xiaofang Sun
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0301 basic medicine ,Iron ,Nuclear Receptor Coactivators ,ATG5 ,Apoptosis ,Autophagy-Related Protein 7 ,Piperazines ,Autophagy-Related Protein 5 ,Lipid peroxidation ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,Autophagy ,Animals ,Homeostasis ,Humans ,Letter to the Editor ,Molecular Biology ,Mice, Knockout ,chemistry.chemical_classification ,Reactive oxygen species ,biology ,Cell Biology ,Fibroblasts ,Cell biology ,Pancreatic Neoplasms ,Ferritin ,030104 developmental biology ,Biochemistry ,Nuclear receptor ,chemistry ,Ferritins ,Cancer cell ,biology.protein ,Lipid Peroxidation ,Reactive Oxygen Species ,Intracellular - Abstract
Macroautophagy/autophagy is an evolutionarily conserved degradation pathway that maintains homeostasis. Ferroptosis, a novel form of regulated cell death, is characterized by a production of reactive oxygen species from accumulated iron and lipid peroxidation. However, the relationship between autophagy and ferroptosis at the genetic level remains unclear. Here, we demonstrated that autophagy contributes to ferroptosis by degradation of ferritin in fibroblasts and cancer cells. Knockout or knockdown of Atg5 (autophagy-related 5) and Atg7 limited erastin-induced ferroptosis with decreased intracellular ferrous iron levels, and lipid peroxidation. Remarkably, NCOA4 (nuclear receptor coactivator 4) was a selective cargo receptor for the selective autophagic turnover of ferritin (namely ferritinophagy) in ferroptosis. Consistently, genetic inhibition of NCOA4 inhibited ferritin degradation and suppressed ferroptosis. In contrast, overexpression of NCOA4 increased ferritin degradation and promoted ferroptosis. These findings provide novel insight into the interplay between autophagy and regulated cell death.
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- 2016
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50. Single nucleotide polymorphism-based microarray analysis for the diagnosis of hydatidiform moles
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Huijuan Shi, Yingjun Xie, Xiaojuan Pei, Xiaofang Sun, Xuying Zhuang, Jialing He, Jianzhu Wu, Yu Dong, and Huiqun Wu
- Subjects
Adult ,0301 basic medicine ,Cancer Research ,Genotype ,Aneuploidy ,Gestational Age ,Single-nucleotide polymorphism ,Biology ,Polymorphism, Single Nucleotide ,Biochemistry ,Loss of heterozygosity ,03 medical and health sciences ,0302 clinical medicine ,Pregnancy ,Genetics ,medicine ,Humans ,SNP ,Copy-number variation ,Molecular Biology ,In Situ Hybridization, Fluorescence ,Oligonucleotide Array Sequence Analysis ,single nucleotide polymorphism-based microarray ,villous tissue ,Microarray analysis techniques ,Hydatidiform Mole ,Articles ,medicine.disease ,spontaneous abortion ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Molecular Medicine ,Female ,Microsatellite Repeats ,SNP array - Abstract
In clinical diagnostics, single nucleotide polymorphism (SNP)-based microarray analysis enables the detection of copy number variations (CNVs), as well as copy number neutral regions, that are absent of heterozygosity throughout the genome. The aim of the present study was to evaluate the effectiveness and sensitivity of SNP-based microarray analysis in the diagnosis of hydatidiform mole (HM). By using whole-genome SNP microarray analysis, villous genotypes were detected, and the ploidy of villous tissue was determined to identify HMs. A total of 66 villous tissues and two twin tissues were assessed in the present study. Among these samples, 11 were triploid, one was tetraploid, 23 were abnormal aneuploidy, three were complete genome homozygosity, and the remaining ones were normal ploidy. The most noteworthy finding of the present study was the identification of six partial HMs and three complete HMs from those samples that were not identified as being HMs on the basis of the initial diagnosis of experienced obstetricians. This study has demonstrated that the application of an SNP-based microarray analysis was able to increase the sensitivity of diagnosis for HMs with partial and complete HMs, which makes the identification of these diseases at an early gestational age possible.
- Published
- 2016
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