1. Molecular surveillance of methicillin-resistant Staphylococcus aureus genomes in hospital unexpectedly reveals discordance between temporal and genetic clustering
- Author
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Susanna L. Lamers, Rebecca Rose, Samual Moot, Yvette S. McCarter, David J. Nolan, Chad Neilsen, Christopher W. Rodriguez, and Sissy Cross
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Methicillin-Resistant Staphylococcus aureus ,medicine.medical_specialty ,Epidemiology ,medicine.disease_cause ,Genome ,03 medical and health sciences ,0302 clinical medicine ,Genetic linkage ,Cluster Analysis ,Humans ,Infection control ,Medicine ,030212 general & internal medicine ,Whole genome sequencing ,Genetics ,Cross Infection ,0303 health sciences ,Molecular epidemiology ,030306 microbiology ,Transmission (medicine) ,business.industry ,Health Policy ,Public Health, Environmental and Occupational Health ,Staphylococcal Infections ,Methicillin-resistant Staphylococcus aureus ,Hospitals ,Infectious Diseases ,business - Abstract
The objective of this study was to identify sources and linkages among methicillin-resistant Staphylococcus aureus infections using whole-genome sequencing (WGS).A total of 56 samples were obtained from all patients with a confirmed MRSA infection over 6 months at University of Florida-Health Jacksonville. Samples were cultured and sequenced; data was analyzed on an automated cloud-based platform. Genetic Clusters were defined as40 single nucleotide polymorphisms. Temporal Clusters were defined as ≥5 MRSA cases over 3 days.We found 7 Genetic Clusters comprising 15 samples. Four Genetic Clusters contained patients with non-overlapping stays (3-10 weeks apart), 3 of which contained patients who shared the same Unit. We also found 5 Temporal Clusters comprising 23 samples, although none of the samples were genetically related.Results showed that temporal clustering may be a poor indicator of genetic linkage. Shared epidemiological characteristics between patients in Genetic Clusters may point toward previously unidentified hospital sources. Repeated observation of related strains is also consistent with ongoing MRSA transmission within the surrounding high-risk community.WGS is a valuable tool for hospital infection prevention and control.
- Published
- 2021
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