102 results on '"Sklar, P."'
Search Results
2. NCI10066: a Phase 1/2 study of olaparib in combination with ramucirumab in previously treated metastatic gastric and gastroesophageal junction adenocarcinoma
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Cecchini, Michael, Cleary, James M, Shyr, Yu, Chao, Joseph, Uboha, Nataliya, Cho, May, Shields, Anthony, Pant, Shubham, Goff, Laura, Spencer, Kristen, Kim, Edward, Stein, Stacey, Kortmansky, Jeremy S, Canosa, Sandra, Sklar, Jeffrey, Swisher, Elizabeth M, Radke, Marc, Ivy, Percy, Boerner, Scott, Durecki, Diane E, Hsu, Chih-Yuan, LoRusso, Patricia, and Lacy, Jill
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Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Clinical Trials and Supportive Activities ,Cancer ,Clinical Research ,Evaluation of treatments and therapeutic interventions ,6.2 Cellular and gene therapies ,6.1 Pharmaceuticals ,Humans ,Ramucirumab ,Stomach Neoplasms ,Phthalazines ,Adenocarcinoma ,Esophagogastric Junction ,Antineoplastic Combined Chemotherapy Protocols ,Esophageal Neoplasms ,Piperazines ,Public Health and Health Services ,Oncology & Carcinogenesis ,Oncology and carcinogenesis - Abstract
BackgroundOur preclinical work revealed tumour hypoxia induces homologous recombination deficiency (HRD), increasing sensitivity to Poly (ADP-ribose) polymerase inhibitors. We aimed to induce tumour hypoxia with ramucirumab thereby sensitising tumours to olaparib.Patients and methodsThis multi-institution single-arm Phase 1/2 trial enrolled patients with metastatic gastroesophageal adenocarcinoma refractory to ≥1 systemic treatment. In dose escalation, olaparib was evaluated at escalating dose levels with ramucirumab 8 mg/kg day 1 in 14-day cycles. The primary endpoint of Phase 1 was the recommended Phase 2 dose (RP2D), and in Phase 2 the primary endpoint was the overall response rate (ORR).ResultsFifty-one patients received ramucirumab and olaparib. The RP2D was olaparib 300 mg twice daily with ramucirumab 8 mg/kg. In evaluable patients at the RP2D the ORR was 6/43 (14%) (95% CI 4.7-25.6). The median progression-free survival (PFS) was 2.8 months (95% CI 2.3-4.2) and median overall survival (OS) was 7.3 months (95% CI 5.7-13.0). Non-statistically significant improvements in PFS and OS were observed for patients with tumours with mutations in HRD genes.ConclusionsOlaparib and ramucirumab is well-tolerated with efficacy that exceeds historical controls with ramucirumab single agent for gastric cancer in a heavily pre-treated patient population.
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- 2024
3. Respiratory pandemic preparedness learnings from the June 2020 COVID-19 outbreak at San Quentin California State Prison
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Kwan, Ada, Sklar, Rachel, Cameron, Drew B, Schell, Robert C, Bertozzi, Stefano M, McCoy, Sandra I, Williams, Brie, and Sears, David A
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Criminology ,Human Society ,Clinical Research ,Prevention ,Infectious Diseases ,Infection ,Good Health and Well Being ,COVID-19 ,California ,Disease Outbreaks ,Humans ,Pandemics ,Prisons ,Prison health ,Decarceration ,Outbreak investigation ,Pandemic preparedness ,Prison environment ,SARS-CoV-2 ,Ventilation ,Public Health and Health Services ,Policy and Administration ,Substance Abuse ,Public health - Abstract
PurposeThis study aims to characterize the June 2020 COVID-19 outbreak at San Quentin California State Prison and to describe what made San Quentin so vulnerable to uncontrolled transmission.Design/methodology/approachSince its onset, the COVID-19 pandemic has exposed and exacerbated the profound health harms of carceral settings, such that nearly half of state prisons reported COVID-19 infection rates that were four or more times (and up to 15 times) the rate found in the state's general population. Thus, addressing the public health crises and inequities of carceral settings during a respiratory pandemic requires analyzing the myriad factors shaping them. In this study, we reported observations and findings from environmental risk assessments during visits to San Quentin California State Prison. We complemented our assessments with analyses of administrative data.FindingsFor future respiratory pathogens that cannot be prevented with effective vaccines, this study argues that outbreaks will no doubt occur again without robust implementation of additional levels of preparedness - improved ventilation, air filtration, decarceration with emergency evacuation planning - alongside addressing the vulnerabilities of carceral settings themselves.Originality/valueThis study addresses two critical aspects that are insufficiently covered in the literature: how to prepare processes to safely implement emergency epidemic measures when needed, such as potential evacuation, and how to address unique challenges throughout an evolving pandemic for each carceral setting.
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- 2023
4. Fossil fuel is the common denominator between climate change and petrochemical exposures, and effects on women and childrenʼs health
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Trowbridge, Jessica, Goin, Dana E, Abrahamsson, Dimitri, Sklar, Rachel, and Woodruff, Tracey J
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Reproductive Medicine ,Biomedical and Clinical Sciences ,Climate-Related Exposures and Conditions ,Good Health and Well Being ,Child ,Humans ,Female ,Child Health ,Fossil Fuels ,Climate Change ,Air Pollution ,endocrine disrupting compounds ,fossil fuel ,petrochemicals ,plastics ,pregnancy ,Women's and children' health ,Women's and children’s health ,Paediatrics and Reproductive Medicine ,Obstetrics & Reproductive Medicine ,Reproductive medicine - Abstract
Synopsis: Fossil fuels contribute to climate change and petrochemicals, both of which increase maternal and child disease. Reducing fossil fuels can reap a double benefit for climate change and improved health.
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- 2023
5. Housing: Fragile buffer to wildfire smoke in pregnancy
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Sklar, Rachel S and Padula, Amy M
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Reproductive Medicine ,Biomedical and Clinical Sciences ,Pregnancy ,Female ,Humans ,Smoke ,Wildfires ,Housing ,Environmental Exposure ,air pollution ,birth outcomes ,climate change ,fire ,housing ,policy ,pregnancy ,smoke ,wildfires ,Paediatrics and Reproductive Medicine ,Obstetrics & Reproductive Medicine ,Reproductive medicine - Abstract
Synopsis: Living near or migrating to areas at high risk for wildfires may result in health consequences and increased disparities for pregnant people and their children.
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- 2023
6. Ventilation conditions during COVID-19 outbreaks in six California state carceral institutions.
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Sklar, Rachel, Noth, Elizabeth, Kwan, Ada, Sear, David, and Bertozzi, Stefano
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Adult ,Humans ,COVID-19 ,Air Pollution ,Indoor ,Ventilation ,Respiration ,Prisons ,Disease Outbreaks ,California - Abstract
Residents of carceral facilities are exposed to poor ventilation conditions which leads to the spread of communicable diseases such as COVID-19. Indoor ventilation conditions are rarely studied within carceral settings and there remains limited capacity to develop solutions to address the impact of poor ventilation on the health of people who are incarcerated. In this study, we empirically measured ventilation rates within housing units of six adult prisons in the California Department of Corrections and Rehabilitation (CDCR) and compare the measured ventilation rates to recommended standards issued by the World Health Organization (WHO). Findings from the empirical assessment include lower ventilation rates than the recommended ventilation standards with particularly low ventilation during winter months when heating systems were in use. Inadvertent airflows from spaces housing potentially infected individuals to shared common spaces was also observed. The methodology used for this work can be leveraged for routine ventilation monitoring, pandemic preparedness, and disaster response.
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- 2023
7. Incidence and Prevalence of Coronavirus Disease 2019 Within a Healthcare Worker Cohort During the First Year of the Severe Acute Respiratory Syndrome Coronavirus 2 Pandemic
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Doernberg, Sarah B, Holubar, Marisa, Jain, Vivek, Weng, Yingjie, Lu, Di, Bollyky, Jenna B, Sample, Hannah, Huang, Beatrice, Craik, Charles S, Desai, Manisha, Rutherford, George W, Maldonado, Yvonne, Bhargava, Parul, Bohn, Markus, Chao, Jessica, Ghahremani, Jacob, Glidden, David, Gonzales, Ralph, Jaladanki, Sravya, Julien, Aida, Lowenstein, Daniel, Miller, Steve, Mustoe, Audrey, Paoletti, Marcus, Villa, Rodolfo, Wan, Emerald, Williams, Aimee, Brown, Lillian, Chuang, Jessica, Marquez, Carina, Padda, Guntas, Rubio, Luis, Valdivieso, Daisy, Abad, Rosebay, Bet, Anthony, Bollyky, Jenna, Fung, Jeffrey, Graber, Anna, Holderman, Cole, Kelley, Hannah, Kempema, Amanda, Kong, Christina, Leung, Christopher, Lohmann, Joseph, Minor, Lloyd, Orozco, Lorena, Pinsky, Benjamin A, Saxeena, Jamie, Sklar, Matthew, Tang, Hilary, Wiese, Jasmine, Crawford, Emily, and DeRisi, Joe
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Lung ,Emerging Infectious Diseases ,Clinical Research ,Biodefense ,Vaccine Related ,Prevention ,Infectious Diseases ,2.1 Biological and endogenous factors ,2.2 Factors relating to the physical environment ,2.4 Surveillance and distribution ,Aetiology ,Infection ,Good Health and Well Being ,Humans ,SARS-CoV-2 ,Pandemics ,COVID-19 ,Incidence ,Prevalence ,Longitudinal Studies ,Health Personnel ,Cohort Studies ,healthcare worker ,healthcare personnel ,CHART Study Consortium ,Biological Sciences ,Medical and Health Sciences ,Microbiology - Abstract
BackgroundPreventing severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2_ infections in healthcare workers (HCWs) is critical for healthcare delivery. We aimed to estimate and characterize the prevalence and incidence of coronavirus disease 2019 (COVID-19) in a US HCW cohort and to identify risk factors associated with infection.MethodsWe conducted a longitudinal cohort study of HCWs at 3 Bay Area medical centers using serial surveys and SARS-CoV-2 viral and orthogonal serological testing, including measurement of neutralizing antibodies. We estimated baseline prevalence and cumulative incidence of COVID-19. We performed multivariable Cox proportional hazards models to estimate associations of baseline factors with incident infections and evaluated the impact of time-varying exposures on time to COVID-19 using marginal structural models.ResultsA total of 2435 HCWs contributed 768 person-years of follow-up time. We identified 21 of 2435 individuals with prevalent infection, resulting in a baseline prevalence of 0.86% (95% confidence interval [CI], .53%-1.32%). We identified 70 of 2414 incident infections (2.9%), yielding a cumulative incidence rate of 9.11 cases per 100 person-years (95% CI, 7.11-11.52). Community contact with a known COVID-19 case was most strongly correlated with increased hazard for infection (hazard ratio, 8.1 [95% CI, 3.8-17.5]). High-risk work-related exposures (ie, breach in protective measures) drove an association between work exposure and infection (hazard ratio, 2.5 [95% CI, 1.3-4.8). More cases were identified in HCWs when community case rates were high.ConclusionsWe observed modest COVID-19 incidence despite consistent exposure at work. Community contact was strongly associated with infections, but contact at work was not unless accompanied by high-risk exposure.
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- 2022
8. Implementation outcomes from a pilot of “Access to Tailored Autism Integrated Care” for children with autism and mental health needs
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Stadnick, Nicole A, Aarons, Gregory A, Martinez, Kassandra, Sklar, Marisa, Coleman, Karen J, Gizzo, Daniel P, Lane, Elizabeth, Kuelbs, Cynthia L, and Brookman-Frazee, Lauren
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Biomedical and Clinical Sciences ,Psychology ,Clinical Research ,Intellectual and Developmental Disabilities (IDD) ,Behavioral and Social Science ,Mental Health ,Health Services ,Pediatric ,Brain Disorders ,Autism ,Management of diseases and conditions ,7.1 Individual care needs ,Mental health ,Good Health and Well Being ,Adolescent ,Autism Spectrum Disorder ,Autistic Disorder ,Child ,Child ,Preschool ,Delivery of Health Care ,Integrated ,Humans ,Pilot Projects ,autism ,implementation ,integrated care ,mental health ,pediatrics ,Specialist Studies in Education ,Cognitive Sciences ,Developmental & Child Psychology ,Biomedical and clinical sciences - Abstract
Lay abstractChildren with autism frequently experience co-occurring mental health needs. The "Access to Tailored Autism Integrated Care (ATTAIN)" model was co-created with caregivers, pediatric providers, and health care leaders to identify mental health needs and link to mental health care for autistic children. This article describes outcomes from a pilot study of Access to Tailored Autism Integrated Care with 36 pediatric primary care providers from seven clinics within three healthcare systems. Providers participated in an initial Access to Tailored Autism Integrated Care training and received ongoing online support over 4 months with autistic patients ages 4-16 years old. Survey and interview assessments measured provider perceptions of feasibility, acceptability, and intentions to continue using Access to Tailored Autism Integrated Care after the pilot. Providers reported that Access to Tailored Autism Integrated Care was feasible, acceptable, that the initial training was helpful in their implementation but that more specific and tailored implementation support was needed. Results show that Access to Tailored Autism Integrated Care is a promising model to support mental health screening and linkage for children with autism in primary care. Findings provide information on specific areas of the Access to Tailored Autism Integrated Care model that could be benefit from additional refinement to support more widespread use in primary care settings.
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- 2022
9. Rare coding variants in ten genes confer substantial risk for schizophrenia.
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Singh, Tarjinder, Poterba, Timothy, Curtis, David, Akil, Huda, Al Eissa, Mariam, Barchas, Jack D, Bass, Nicholas, Bigdeli, Tim B, Breen, Gerome, Bromet, Evelyn J, Buckley, Peter F, Bunney, William E, Bybjerg-Grauholm, Jonas, Byerley, William F, Chapman, Sinéad B, Chen, Wei J, Churchhouse, Claire, Craddock, Nicholas, Cusick, Caroline M, DeLisi, Lynn, Dodge, Sheila, Escamilla, Michael A, Eskelinen, Saana, Fanous, Ayman H, Faraone, Stephen V, Fiorentino, Alessia, Francioli, Laurent, Gabriel, Stacey B, Gage, Diane, Gagliano Taliun, Sarah A, Ganna, Andrea, Genovese, Giulio, Glahn, David C, Grove, Jakob, Hall, Mei-Hua, Hämäläinen, Eija, Heyne, Henrike O, Holi, Matti, Hougaard, David M, Howrigan, Daniel P, Huang, Hailiang, Hwu, Hai-Gwo, Kahn, René S, Kang, Hyun Min, Karczewski, Konrad J, Kirov, George, Knowles, James A, Lee, Francis S, Lehrer, Douglas S, Lescai, Francesco, Malaspina, Dolores, Marder, Stephen R, McCarroll, Steven A, McIntosh, Andrew M, Medeiros, Helena, Milani, Lili, Morley, Christopher P, Morris, Derek W, Mortensen, Preben Bo, Myers, Richard M, Nordentoft, Merete, O'Brien, Niamh L, Olivares, Ana Maria, Ongur, Dost, Ouwehand, Willem H, Palmer, Duncan S, Paunio, Tiina, Quested, Digby, Rapaport, Mark H, Rees, Elliott, Rollins, Brandi, Satterstrom, F Kyle, Schatzberg, Alan, Scolnick, Edward, Scott, Laura J, Sharp, Sally I, Sklar, Pamela, Smoller, Jordan W, Sobell, Janet L, Solomonson, Matthew, Stahl, Eli A, Stevens, Christine R, Suvisaari, Jaana, Tiao, Grace, Watson, Stanley J, Watts, Nicholas A, Blackwood, Douglas H, Børglum, Anders D, Cohen, Bruce M, Corvin, Aiden P, Esko, Tõnu, Freimer, Nelson B, Glatt, Stephen J, Hultman, Christina M, McQuillin, Andrew, Palotie, Aarno, Pato, Carlos N, Pato, Michele T, Pulver, Ann E, and St Clair, David
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Humans ,Genetic Predisposition to Disease ,Receptors ,N-Methyl-D-Aspartate ,Case-Control Studies ,Schizophrenia ,Mutation ,Exome ,Neurodevelopmental Disorders ,Human Genome ,Biotechnology ,Mental Health ,Neurosciences ,Brain Disorders ,Genetics ,Serious Mental Illness ,Aetiology ,2.1 Biological and endogenous factors ,Mental health ,Neurological ,General Science & Technology - Abstract
Rare coding variation has historically provided the most direct connections between gene function and disease pathogenesis. By meta-analysing the whole exomes of 24,248 schizophrenia cases and 97,322 controls, we implicate ultra-rare coding variants (URVs) in 10 genes as conferring substantial risk for schizophrenia (odds ratios of 3-50, P
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- 2022
10. Provider REport of Sustainment Scale (PRESS): development and validation of a brief measure of inner context sustainment
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Moullin, Joanna C, Sklar, Marisa, Ehrhart, Mark G, Green, Amy, and Aarons, Gregory A
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Psychology ,Applied and Developmental Psychology ,Pediatric ,Brain Disorders ,Pediatric Research Initiative ,Mental Health ,Substance Misuse ,Behavioral and Social Science ,Health Services ,Clinical Research ,Mental health ,Good Health and Well Being ,Autism Spectrum Disorder ,Child ,Evidence-Based Practice ,Humans ,Leadership ,Psychometrics ,Reproducibility of Results ,Sustainment ,Sustainability ,Maintenance ,Implementation ,Measurement ,Scale ,Psychometric properties ,Knowledge translation ,Information and Computing Sciences ,Medical and Health Sciences ,Health Policy & Services ,Biomedical and clinical sciences - Abstract
BackgroundImplementation scientists and practitioners often rely on frontline providers for reporting on implementation outcomes. Furthermore, measures of sustainment are few, and available sustainment measures are mainly setting or evidenced-based practice (EBP) specific, require organizational and system-level knowledge to complete, and often lack psychometric rigor. The aim of this study was to develop a brief, pragmatic, and generalizable measure for completion by frontline service providers of the implementation outcome, sustainment.MethodsWe utilized a Rasch measurement theory approach to scale the development and testing of psychometric parameters. Sustainment items were developed to be relevant for direct service providers to complete. In order to promote generalizability, data were collected and items were tested across four diverse psychosocial evidence-based practices (motivational interviewing [MI], SafeCare®, classroom pivotal response training [CPRT], and an individualized mental health intervention for children with autism spectrum disorder [AIM-HI]) and in four service settings (substance use disorder treatment, child welfare, education, and specialty mental health). Associations between the sustainment measure and sustainment leadership, sustainment climate, and attitudes towards the adoption and use of each of the EBPs were assessed to confirm construct validity.ResultsThree items for the Provider REport of Sustainment Scale (PRESS) were assessed for measuring the core component of sustainment: continued use of the EBP. Internal consistency reliability was high. The scale indicated fit to the Rasch measurement model with no response dependency, ordered thresholds, no differential item functioning, and supported unidimensionality. Additionally, construct validity evidence was provided based on the correlations with related variables.ConclusionThe PRESS measure is a brief, three-item measure of sustainment that is both pragmatic and useable across different EBPs, provider types, and settings. The PRESS captures frontline staffs' report of their clinic, team, or agency's continued use of an EBP. Future testing of the PRESS for concurrent and predictive validity is recommended.
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- 2021
11. COVID-Related Work Changes, Burnout, and Turnover Intentions in Mental Health Providers: A Moderated Mediation Analysis
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Sklar, Marisa, Ehrhart, Mark G, and Aarons, Gregory A
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Good Health and Well Being ,Adult ,Burnout ,Professional ,COVID-19 ,Community Mental Health Services ,Female ,Health Personnel ,Humans ,Male ,Mediation Analysis ,Middle Aged ,Occupational Stress ,Personnel Turnover ,SARS-CoV-2 ,Self Efficacy ,Telemedicine ,mental health services ,burnout ,job-demands resource model ,moderated mediation ,Clinical Sciences ,Psychiatry - Abstract
Objective: The novel coronavirus disease (COVID-19) has drastically impacted the provision of mental health services. Changes required of providers were substantial and could lead to increased burnout and, subsequently, increased turnover intentions. This study examined burnout experienced by mental health services providers in the context of COVID-19 and through the lens of the job demands-resources (JD-R) model. We examined the effects of work changes on burnout and subsequent turnover intentions, and how job and personal resources may have buffered the extent to which work changes due to COVID-19 impacted burnout. Methods: Service providers (n = 93) from six community mental health centers (CMHCs) in one Midwestern state in the United States completed surveys as part of service contracts to implement evidence-based practices. Path analysis tested the unconditional indirect relations between work changes and turnover intentions through burnout. Moderated mediation determined whether the indirect effect of work changes on turnover intentions via burnout varied in strength by job and personal resources. Results: Work changes had a significant indirect effect on turnover intentions through burnout ( β ^ = .140, 95% CI = .072, .217). This indirect effect varied as a function of two job resources, organizational trust and perceived organizational support. Conclusions and Implications for Practice: Burnout was relatively low only when work changes were low and job resources levels high. When work changes were high, burnout was similarly high across levels of job resources. To minimize burnout, organizations should limit task, setting, and team-related work changes to the extent possible. (PsycInfo Database Record (c) 2021 APA, all rights reserved).
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- 2021
12. Investigating rare pathogenic/likely pathogenic exonic variation in bipolar disorder.
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Jia, Xiaoming, Goes, Fernando S, Locke, Adam E, Palmer, Duncan, Wang, Weiqing, Cohen-Woods, Sarah, Genovese, Giulio, Jackson, Anne U, Jiang, Chen, Kvale, Mark, Mullins, Niamh, Nguyen, Hoang, Pirooznia, Mehdi, Rivera, Margarita, Ruderfer, Douglas M, Shen, Ling, Thai, Khanh, Zawistowski, Matthew, Zhuang, Yongwen, Abecasis, Gonçalo, Akil, Huda, Bergen, Sarah, Burmeister, Margit, Chapman, Sinéad, DelaBastide, Melissa, Juréus, Anders, Kang, Hyun Min, Kwok, Pui-Yan, Li, Jun Z, Levy, Shawn E, Monson, Eric T, Moran, Jennifer, Sobell, Janet, Watson, Stanley, Willour, Virginia, Zöllner, Sebastian, Adolfsson, Rolf, Blackwood, Douglas, Boehnke, Michael, Breen, Gerome, Corvin, Aiden, Craddock, Nick, DiFlorio, Arianna, Hultman, Christina M, Landen, Mikael, Lewis, Cathryn, McCarroll, Steven A, Richard McCombie, W, McGuffin, Peter, McIntosh, Andrew, McQuillin, Andrew, Morris, Derek, Myers, Richard M, O'Donovan, Michael, Ophoff, Roel, Boks, Marco, Kahn, Rene, Ouwehand, Willem, Owen, Michael, Pato, Carlos, Pato, Michele, Posthuma, Danielle, Potash, James B, Reif, Andreas, Sklar, Pamela, Smoller, Jordan, Sullivan, Patrick F, Vincent, John, Walters, James, Neale, Benjamin, Purcell, Shaun, Risch, Neil, Schaefer, Catherine, Stahl, Eli A, Zandi, Peter P, and Scott, Laura J
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Humans ,Genetic Predisposition to Disease ,Bipolar Disorder ,Schizophrenia ,Polymorphism ,Single Nucleotide ,Genetic Variation ,Genome-Wide Association Study ,Exome ,Brain Disorders ,Prevention ,Clinical Research ,Human Genome ,Serious Mental Illness ,Genetics ,Mental Health ,2.1 Biological and endogenous factors ,Mental health ,Biological Sciences ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry - Abstract
Bipolar disorder (BD) is a serious mental illness with substantial common variant heritability. However, the role of rare coding variation in BD is not well established. We examined the protein-coding (exonic) sequences of 3,987 unrelated individuals with BD and 5,322 controls of predominantly European ancestry across four cohorts from the Bipolar Sequencing Consortium (BSC). We assessed the burden of rare, protein-altering, single nucleotide variants classified as pathogenic or likely pathogenic (P-LP) both exome-wide and within several groups of genes with phenotypic or biologic plausibility in BD. While we observed an increased burden of rare coding P-LP variants within 165 genes identified as BD GWAS regions in 3,987 BD cases (meta-analysis OR = 1.9, 95% CI = 1.3-2.8, one-sided p = 6.0 × 10-4), this enrichment did not replicate in an additional 9,929 BD cases and 14,018 controls (OR = 0.9, one-side p = 0.70). Although BD shares common variant heritability with schizophrenia, in the BSC sample we did not observe a significant enrichment of P-LP variants in SCZ GWAS genes, in two classes of neuronal synaptic genes (RBFOX2 and FMRP) associated with SCZ or in loss-of-function intolerant genes. In this study, the largest analysis of exonic variation in BD, individuals with BD do not carry a replicable enrichment of rare P-LP variants across the exome or in any of several groups of genes with biologic plausibility. Moreover, despite a strong shared susceptibility between BD and SCZ through common genetic variation, we do not observe an association between BD risk and rare P-LP coding variants in genes known to modulate risk for SCZ.
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- 2021
13. Contributions of common genetic variants to risk of schizophrenia among individuals of African and Latino ancestry
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Bigdeli, Tim B, Genovese, Giulio, Georgakopoulos, Penelope, Meyers, Jacquelyn L, Peterson, Roseann E, Iyegbe, Conrad O, Medeiros, Helena, Valderrama, Jorge, Achtyes, Eric D, Kotov, Roman, Stahl, Eli A, Abbott, Colony, Azevedo, Maria Helena, Belliveau, Richard A, Bevilacqua, Elizabeth, Bromet, Evelyn J, Byerley, William, Carvalho, Celia Barreto, Chapman, Sinéad B, DeLisi, Lynn E, Dumont, Ashley L, O’Dushlaine, Colm, Evgrafov, Oleg V, Fochtmann, Laura J, Gage, Diane, Kennedy, James L, Kinkead, Becky, Macedo, Antonio, Moran, Jennifer L, Morley, Christopher P, Dewan, Mantosh J, Nemesh, James, Perkins, Diana O, Purcell, Shaun M, Rakofsky, Jeffrey J, Scolnick, Edward M, Sklar, Brooke M, Sklar, Pamela, Smoller, Jordan W, Sullivan, Patrick F, Macciardi, Fabio, Marder, Stephen R, Gur, Ruben C, Gur, Raquel E, Braff, David L, Nicolini, Humberto, Escamilla, Michael A, Vawter, Marquis P, Sobell, Janet L, Malaspina, Dolores, Lehrer, Douglas S, Buckley, Peter F, Rapaport, Mark H, Knowles, James A, Fanous, Ayman H, Pato, Michele T, McCarroll, Steven A, and Pato, Carlos N
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Human Genome ,Serious Mental Illness ,Clinical Research ,Schizophrenia ,Brain Disorders ,Genetics ,Mental Health ,Aetiology ,2.1 Biological and endogenous factors ,Black People ,Female ,Genetic Loci ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Hispanic or Latino ,Humans ,Male ,Polymorphism ,Single Nucleotide ,Consortium on the Genetics of Schizophrenia (COGS) Investigators ,Genomic Psychiatry Cohort (GPC) Consortium ,Biological Sciences ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry - Abstract
Schizophrenia is a common, chronic and debilitating neuropsychiatric syndrome affecting tens of millions of individuals worldwide. While rare genetic variants play a role in the etiology of schizophrenia, most of the currently explained liability is within common variation, suggesting that variation predating the human diaspora out of Africa harbors a large fraction of the common variant attributable heritability. However, common variant association studies in schizophrenia have concentrated mainly on cohorts of European descent. We describe genome-wide association studies of 6152 cases and 3918 controls of admixed African ancestry, and of 1234 cases and 3090 controls of Latino ancestry, representing the largest such study in these populations to date. Combining results from the samples with African ancestry with summary statistics from the Psychiatric Genomics Consortium (PGC) study of schizophrenia yielded seven newly genome-wide significant loci, and we identified an additional eight loci by incorporating the results from samples with Latino ancestry. Leveraging population differences in patterns of linkage disequilibrium, we achieve improved fine-mapping resolution at 22 previously reported and 4 newly significant loci. Polygenic risk score profiling revealed improved prediction based on trans-ancestry meta-analysis results for admixed African (Nagelkerke's R2 = 0.032; liability R2 = 0.017; P
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- 2020
14. Host variables confound gut microbiota studies of human disease.
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Vujkovic-Cvijin, Ivan, Sklar, Jack, Jiang, Lingjing, Natarajan, Loki, Knight, Rob, and Belkaid, Yasmine
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Feces ,Humans ,Diabetes Mellitus ,Type 2 ,Disease ,RNA ,Ribosomal ,16S ,Body Mass Index ,Diet ,Area Under Curve ,Case-Control Studies ,ROC Curve ,Alcohol Drinking ,Life Style ,Residence Characteristics ,Gastrointestinal Motility ,Adult ,Aged ,Aged ,80 and over ,Middle Aged ,Female ,Male ,Young Adult ,Machine Learning ,Gastrointestinal Microbiome ,Data Analysis ,Confounding Factors ,Epidemiologic ,Genetics ,Human Genome ,2.1 Biological and endogenous factors ,Oral and gastrointestinal ,General Science & Technology - Abstract
Low concordance between studies that examine the role of microbiota in human diseases is a pervasive challenge that limits the capacity to identify causal relationships between host-associated microorganisms and pathology. The risk of obtaining false positives is exacerbated by wide interindividual heterogeneity in microbiota composition1, probably due to population-wide differences in human lifestyle and physiological variables2 that exert differential effects on the microbiota. Here we infer the greatest, generalized sources of heterogeneity in human gut microbiota profiles and also identify human lifestyle and physiological characteristics that, if not evenly matched between cases and controls, confound microbiota analyses to produce spurious microbial associations with human diseases. We identify alcohol consumption frequency and bowel movement quality as unexpectedly strong sources of gut microbiota variance that differ in distribution between healthy participants and participants with a disease and that can confound study designs. We demonstrate that for numerous prevalent, high-burden human diseases, matching cases and controls for confounding variables reduces observed differences in the microbiota and the incidence of spurious associations. On this basis, we present a list of host variables that we recommend should be captured in human microbiota studies for the purpose of matching comparison groups, which we anticipate will increase robustness and reproducibility in resolving the members of the gut microbiota that are truly associated with human disease.
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- 2020
15. Analysis of Genetically Regulated Gene Expression Identifies a Prefrontal PTSD Gene, SNRNP35, Specific to Military Cohorts
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Huckins, Laura M, Chatzinakos, Chris, Breen, Michael S, Hartmann, Jakob, Klengel, Torsten, da Silva Almeida, Ana C, Dobbyn, Amanda, Girdhar, Kiran, Hoffman, Gabriel E, Klengel, Claudia, Logue, Mark W, Lori, Adriana, Maihofer, Adam X, Morrison, Filomene G, Nguyen, Hoang T, Park, Yongjin, Ruderfer, Douglas, Sloofman, Laura G, van Rooij, Sanne JH, Consortium, PTSD Working Group of Psychiatric Genomics, Baker, Dewleen G, Chen, Chia-Yen, Cox, Nancy, Duncan, Laramie E, Geyer, Mark A, Glatt, Stephen J, Im, Hae Kyung, Risbrough, Victoria B, Smoller, Jordan W, Stein, Dan J, Yehuda, Rachel, Liberzon, Israel, Koenen, Karestan C, Jovanovic, Tanja, Kellis, Manolis, Miller, Mark W, Bacanu, Silviu-Alin, Nievergelt, Caroline M, Buxbaum, Joseph D, Sklar, Pamela, Ressler, Kerry J, Stahl, Eli A, and Daskalakis, Nikolaos P
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Genetics ,Brain Disorders ,Post-Traumatic Stress Disorder (PTSD) ,Mental Health ,Neurosciences ,1.1 Normal biological development and functioning ,Underpinning research ,Neurological ,Animals ,Case-Control Studies ,Cohort Studies ,Dexamethasone ,Down-Regulation ,Gene Expression Regulation ,Gene Regulatory Networks ,Genetic Predisposition to Disease ,Humans ,Leukocytes ,Male ,Mice ,Mice ,Inbred C57BL ,Military Personnel ,Prefrontal Cortex ,RNA Interference ,RNA ,Small Interfering ,Repressor Proteins ,Ribonucleoproteins ,Small Nuclear ,Stress Disorders ,Post-Traumatic ,PTSD Working Group of Psychiatric Genomics Consortium ,GWAS ,PTSD ,blood ,civilian ,glucocorticoid ,military ,prefrontal cortex ,sex ,splicing ,transcriptomic imputation ,genetics ,Transcriptomic Imputation ,trauma ,Biochemistry and Cell Biology ,Medical Physiology - Abstract
To reveal post-traumatic stress disorder (PTSD) genetic risk influences on tissue-specific gene expression, we use brain and non-brain transcriptomic imputation. We impute genetically regulated gene expression (GReX) in 29,539 PTSD cases and 166,145 controls from 70 ancestry-specific cohorts and identify 18 significant GReX-PTSD associations corresponding to specific tissue-gene pairs. The results suggest substantial genetic heterogeneity based on ancestry, cohort type (military versus civilian), and sex. Two study-wide significant PTSD associations are identified in European and military European cohorts; ZNF140 is predicted to be upregulated in whole blood, and SNRNP35 is predicted to be downregulated in dorsolateral prefrontal cortex, respectively. In peripheral leukocytes from 175 marines, the observed PTSD differential gene expression correlates with the predicted differences for these individuals, and deployment stress produces glucocorticoid-regulated expression changes that include downregulation of both ZNF140 and SNRNP35. SNRNP35 knockdown in cells validates its functional role in U12-intron splicing. Finally, exogenous glucocorticoids in mice downregulate prefrontal Snrnp35 expression.
- Published
- 2020
16. Comparative genetic architectures of schizophrenia in East Asian and European populations
- Author
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Lam, Max, Chen, Chia-Yen, Li, Zhiqiang, Martin, Alicia R, Bryois, Julien, Ma, Xixian, Gaspar, Helena, Ikeda, Masashi, Benyamin, Beben, Brown, Brielin C, Liu, Ruize, Zhou, Wei, Guan, Lili, Kamatani, Yoichiro, Kim, Sung-Wan, Kubo, Michiaki, Kusumawardhani, Agung AAA, Liu, Chih-Min, Ma, Hong, Periyasamy, Sathish, Takahashi, Atsushi, Xu, Zhida, Yu, Hao, Zhu, Feng, Chen, Wei J, Faraone, Stephen, Glatt, Stephen J, He, Lin, Hyman, Steven E, Hwu, Hai-Gwo, McCarroll, Steven A, Neale, Benjamin M, Sklar, Pamela, Wildenauer, Dieter B, Yu, Xin, Zhang, Dai, Mowry, Bryan J, Lee, Jimmy, Holmans, Peter, Xu, Shuhua, Sullivan, Patrick F, Ripke, Stephan, O’Donovan, Michael C, Daly, Mark J, Qin, Shengying, Sham, Pak, Iwata, Nakao, Hong, Kyung S, Schwab, Sibylle G, Yue, Weihua, Tsuang, Ming, Liu, Jianjun, Ma, Xiancang, Kahn, René S, Shi, Yongyong, and Huang, Hailiang
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Genetics ,Human Genome ,Serious Mental Illness ,Schizophrenia ,Brain Disorders ,Mental Health ,Prevention ,Aetiology ,2.1 Biological and endogenous factors ,Mental health ,Good Health and Well Being ,Asian People ,Case-Control Studies ,Asia ,Eastern ,Genetics ,Population ,Genome-Wide Association Study ,Humans ,Polymorphism ,Single Nucleotide ,White People ,Schizophrenia Working Group of the Psychiatric Genomics Consortium ,Indonesia Schizophrenia Consortium ,Genetic REsearch on schizophreniA neTwork-China and the Netherlands ,Biological Sciences ,Medical and Health Sciences ,Developmental Biology - Abstract
Schizophrenia is a debilitating psychiatric disorder with approximately 1% lifetime risk globally. Large-scale schizophrenia genetic studies have reported primarily on European ancestry samples, potentially missing important biological insights. Here, we report the largest study to date of East Asian participants (22,778 schizophrenia cases and 35,362 controls), identifying 21 genome-wide-significant associations in 19 genetic loci. Common genetic variants that confer risk for schizophrenia have highly similar effects between East Asian and European ancestries (genetic correlation = 0.98 ± 0.03), indicating that the genetic basis of schizophrenia and its biology are broadly shared across populations. A fixed-effect meta-analysis including individuals from East Asian and European ancestries identified 208 significant associations in 176 genetic loci (53 novel). Trans-ancestry fine-mapping reduced the sets of candidate causal variants in 44 loci. Polygenic risk scores had reduced performance when transferred across ancestries, highlighting the importance of including sufficient samples of major ancestral groups to ensure their generalizability across populations.
- Published
- 2019
17. Comparative case studies in integrated care implementation from across the globe: a quest for action
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Stadnick, Nicole A, Sadler, Euan, Sandall, Jane, Turienzo, Cristina Fernandez, Bennett, Ian M, Borkan, Jeffrey, Oladeji, Bibilola, Gureje, Oye, Aarons, Gregory A, and Sklar, Marisa
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Health Services and Systems ,Health Sciences ,Behavioral and Social Science ,Health Services ,Clinical Research ,8.1 Organisation and delivery of services ,Health and social care services research ,Generic health relevance ,Good Health and Well Being ,Case-Control Studies ,Delivery of Health Care ,Integrated ,Humans ,Israel ,Nigeria ,United Kingdom ,United States ,Vietnam ,Integrated care ,Global healthcare ,Multiple case study ,EPIS framework ,Library and Information Studies ,Nursing ,Public Health and Health Services ,Health Policy & Services ,Health services and systems ,Public health - Abstract
BACKGROUND:Integrated care is the coordination of general and behavioral health and is a highly promising and practical approach to improving healthcare delivery and patient outcomes. While there is growing interest and investment in integrated care implementation internationally, there are no formal guidelines for integrated care implementation applicable to diverse healthcare systems. Furthermore, there is a complex interplay of factors at multiple levels of influence that are necessary for successful implementation of integrated care in health systems. METHODS:Guided by the Exploration, Preparation, Implementation, Sustainment (EPIS) framework (Aarons et al., 2011), a multiple case study design was used to address two research objectives: 1) To highlight current integrated care implementation efforts through seven international case studies that target a range of healthcare systems, patient populations and implementation strategies and outcomes, and 2) To synthesize the shared and unique challenges and successes across studies using the EPIS framework. RESULTS:The seven reported case studies represent integrated care implementation efforts from five countries and continents (United States, United Kingdom, Vietnam, Israel, and Nigeria), target a range of clinical populations and care settings, and span all phases of the EPIS framework. Qualitative synthesis of these case studies illuminated common outer context, inner context, bridging and innovation factors that were key drivers of implementation. CONCLUSIONS:We propose an agenda that outlines priority goals and related strategies to advance integrated care implementation research. These goals relate to: 1) the role of funding at multiple levels of implementation, 2) meaningful collaboration with stakeholders across phases of implementation and 3) clear communication to stakeholders about integrated care implementation. TRIAL REGISTRATION:Not applicable.
- Published
- 2019
18. Validation of the Implementation Climate Scale (ICS) in substance use disorder treatment organizations
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Ehrhart, Mark G, Torres, Elisa M, Hwang, Joyce, Sklar, Marisa, and Aarons, Gregory A
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Psychology ,Health Services and Systems ,Health Sciences ,Applied and Developmental Psychology ,Clinical Research ,Brain Disorders ,Substance Misuse ,Drug Abuse (NIDA only) ,Health Services ,Mental Health ,Mental health ,Good Health and Well Being ,Adult ,Aged ,Evidence-Based Practice ,Factor Analysis ,Statistical ,Female ,Humans ,Male ,Middle Aged ,Organizational Innovation ,Psychometrics ,Reproducibility of Results ,Substance Abuse Treatment Centers ,Surveys and Questionnaires ,Young Adult ,Implementation climate ,Leadership ,Substance use disorder treatment ,Addictions ,Confirmatory factor analysis ,Organizational readiness ,Substance Abuse ,Public health ,Clinical and health psychology - Abstract
BackgroundOne critical factor in the implementation of evidence-based practice (EBP) in substance use disorder treatment organizations is an inner organizational context that clearly supports implementation efforts. The Implementation Climate Scale (ICS) has been developed to allow researchers and organizations to assess climate for EBP implementation in health and allied health service organizations. The ICS consists of 18 items and measures six dimensions of implementation climate: focus on EBP, educational support for EBP, recognition for EBP, rewards for EBP, selection for EBP, and selection for openness. The ICS was initially developed in a mental health context; thus, the goal of this study was to provide initial validation of the ICS in substance use disorder (SUD) treatment settings.MethodsConfirmatory factor analysis (CFA) was used to assess the psychometric functioning of the ICS using survey data from 326 providers in 65 teams in SUD treatment programs. Cronbach's alpha was examined to assess internal consistency of the ICS, and individual and team level construct-based validity was examined by comparing its correlations with service climate, molar climate, and organizational change.ResultsWe found evidence for the reliability, factor structure, and validity of the ICS in SUD services. The psychometric functioning of the ICS in SUD treatment settings was comparable to that found in mental health contexts.ConclusionsThe ICS is a brief and pragmatic tool for researchers to better understand a critical antecedent for implementation effectiveness in SUD treatment and for organizational leaders in SUD treatment organizations to evaluate the extent to which providers perceive that their organization supports EBP implementation.
- Published
- 2019
19. Reverse beveling to improve wound edge apposition
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Beroukhim, Kourosh, Sklar, Lindsay R, and Eisen, Daniel B
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Biomedical and Clinical Sciences ,Clinical Sciences ,Cicatrix ,Dermatologic Surgical Procedures ,Humans ,Surgical Wound ,Suture Techniques ,incision ,reverse bevel ,surgical dermatology ,surgical pearl ,surgical scar ,wound apposition ,Dermatology & Venereal Diseases ,Clinical sciences - Published
- 2019
20. GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores
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Mullins, Niamh, Bigdeli, Tim B, Børglum, Anders D, Coleman, Jonathan RI, Demontis, Ditte, Mehta, Divya, Power, Robert A, Ripke, Stephan, Stahl, Eli A, Starnawska, Anna, Anjorin, Adebayo, Corvin, Aiden, Sanders, Alan R, Forstner, Andreas J, Reif, Andreas, Koller, Anna C, Świątkowska, Beata, Baune, Bernhard T, Müller-Myhsok, Bertram, Penninx, Brenda WJH, Pato, Carlos, Zai, Clement, Rujescu, Dan, Hougaard, David M, Quested, Digby, Levinson, Douglas F, Binder, Elisabeth B, Byrne, Enda M, Agerbo, Esben, Streit, Fabian, Mayoral, Fermin, Bellivier, Frank, Degenhardt, Franziska, Breen, Gerome, Morken, Gunnar, Turecki, Gustavo, Rouleau, Guy A, Grabe, Hans J, Völzke, Henry, Jones, Ian, Giegling, Ina, Agartz, Ingrid, Melle, Ingrid, Lawrence, Jacob, Walters, James TR, Strohmaier, Jana, Shi, Jianxin, Hauser, Joanna, Biernacka, Joanna M, Vincent, John B, Kelsoe, John, Strauss, John S, Lissowska, Jolanta, Pimm, Jonathan, Smoller, Jordan W, Guzman-Parra, José, Berger, Klaus, Scott, Laura J, Jones, Lisa A, Azevedo, M Helena, Trzaskowski, Maciej, Kogevinas, Manolis, Rietschel, Marcella, Boks, Marco, Ising, Marcus, Grigoroiu-Serbanescu, Maria, Hamshere, Marian L, Leboyer, Marion, Frye, Mark, Nöthen, Markus M, Alda, Martin, Preisig, Martin, Nordentoft, Merete, Boehnke, Michael, O’Donovan, Michael C, Owen, Michael J, Pato, Michele T, Renteria, Miguel E, Budde, Monika, Weissman, Myrna M, Wray, Naomi R, Bass, Nicholas, Craddock, Nicholas, Smeland, Olav B, Andreassen, Ole A, Mors, Ole, Gejman, Pablo V, Sklar, Pamela, McGrath, Patrick, Hoffmann, Per, McGuffin, Peter, Lee, Phil H, Mortensen, Preben Bo, Kahn, René S, Ophoff, Roel A, Adolfsson, Rolf, Van der Auwera, Sandra, Djurovic, Srdjan, Kloiber, Stefan, and Heilmann-Heimbach, Stefanie
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Prevention ,Suicide ,Serious Mental Illness ,Schizophrenia ,Human Genome ,Depression ,Mental Health ,Genetics ,Brain Disorders ,Aetiology ,2.3 Psychological ,social and economic factors ,2.1 Biological and endogenous factors ,Mental health ,Good Health and Well Being ,Bipolar Disorder ,Case-Control Studies ,Depressive Disorder ,Major ,Female ,Genome-Wide Association Study ,Humans ,Male ,Multifactorial Inheritance ,Risk Factors ,Suicide ,Attempted ,M.R.C.Psych ,Dr.Med.Sc ,Dipl.-Psych ,Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium ,Bipolar Disorder Working Group of the Psychiatric Genomics Consortium ,Schizophrenia Working Group of the Psychiatric Genomics Consortium ,Mood Disorders ,Polygenic Risk Scoring ,Psychiatric Genomics Consortium ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry - Abstract
ObjectiveMore than 90% of people who attempt suicide have a psychiatric diagnosis; however, twin and family studies suggest that the genetic etiology of suicide attempt is partially distinct from that of the psychiatric disorders themselves. The authors present the largest genome-wide association study (GWAS) on suicide attempt, using cohorts of individuals with major depressive disorder, bipolar disorder, and schizophrenia from the Psychiatric Genomics Consortium.MethodsThe samples comprised 1,622 suicide attempters and 8,786 nonattempters with major depressive disorder; 3,264 attempters and 5,500 nonattempters with bipolar disorder; and 1,683 attempters and 2,946 nonattempters with schizophrenia. A GWAS on suicide attempt was performed by comparing attempters to nonattempters with each disorder, followed by a meta-analysis across disorders. Polygenic risk scoring was used to investigate the genetic relationship between suicide attempt and the psychiatric disorders.ResultsThree genome-wide significant loci for suicide attempt were found: one associated with suicide attempt in major depressive disorder, one associated with suicide attempt in bipolar disorder, and one in the meta-analysis of suicide attempt in mood disorders. These associations were not replicated in independent mood disorder cohorts from the UK Biobank and iPSYCH. No significant associations were found in the meta-analysis of all three disorders. Polygenic risk scores for major depression were significantly associated with suicide attempt in major depressive disorder (R2=0.25%), bipolar disorder (R2=0.24%), and schizophrenia (R2=0.40%).ConclusionsThis study provides new information on genetic associations and demonstrates that genetic liability for major depression increases risk for suicide attempt across psychiatric disorders. Further collaborative efforts to increase sample size may help to robustly identify genetic associations and provide biological insights into the etiology of suicide attempt.
- Published
- 2019
21. Contribution of Rare Copy Number Variants to Bipolar Disorder Risk Is Limited to Schizoaffective Cases
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Charney, Alexander W, Stahl, Eli A, Green, Elaine K, Chen, Chia-Yen, Moran, Jennifer L, Chambert, Kimberly, Belliveau, Richard A, Forty, Liz, Gordon-Smith, Katherine, Lee, Phil H, Bromet, Evelyn J, Buckley, Peter F, Escamilla, Michael A, Fanous, Ayman H, Fochtmann, Laura J, Lehrer, Douglas S, Malaspina, Dolores, Marder, Stephen R, Morley, Christopher P, Nicolini, Humberto, Perkins, Diana O, Rakofsky, Jeffrey J, Rapaport, Mark H, Medeiros, Helena, Sobell, Janet L, Backlund, Lena, Bergen, Sarah E, Juréus, Anders, Schalling, Martin, Lichtenstein, Paul, Knowles, James A, Burdick, Katherine E, Jones, Ian, Jones, Lisa A, Hultman, Christina M, Perlis, Roy, Purcell, Shaun M, McCarroll, Steven A, Pato, Carlos N, Pato, Michele T, Di Florio, Ariana, Craddock, Nick, Landén, Mikael, Smoller, Jordan W, Ruderfer, Douglas M, and Sklar, Pamela
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Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,Genetics ,Serious Mental Illness ,Bipolar Disorder ,Mental Health ,Prevention ,Brain Disorders ,Schizophrenia ,2.1 Biological and endogenous factors ,Aetiology ,Mental health ,Good Health and Well Being ,Case-Control Studies ,Cohort Studies ,DNA Copy Number Variations ,Gene Duplication ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Humans ,Multifactorial Inheritance ,Psychotic Disorders ,Bipolar disorder ,Copy number variant ,Polygenic risk score ,Rare variant burden ,Biological Sciences ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry ,Biological sciences ,Biomedical and clinical sciences ,Psychology - Abstract
BackgroundGenetic risk for bipolar disorder (BD) is conferred through many common alleles, while a role for rare copy number variants (CNVs) is less clear. Subtypes of BD including schizoaffective disorder bipolar type (SAB), bipolar I disorder (BD I), and bipolar II disorder (BD II) differ according to the prominence and timing of psychosis, mania, and depression. The genetic factors contributing to the combination of symptoms among these subtypes are poorly understood.MethodsRare large CNVs were analyzed in 6353 BD cases (3833 BD I [2676 with psychosis, 850 without psychosis, and 307 with unknown psychosis history], 1436 BD II, 579 SAB, and 505 BD not otherwise specified) and 8656 controls. CNV burden and a polygenic risk score (PRS) for schizophrenia were used to evaluate the relative contributions of rare and common variants to risk of BD, BD subtypes, and psychosis.ResultsCNV burden did not differ between BD and controls when treated as a single diagnostic entity. However, burden in SAB was increased relative to controls (p = .001), BD I (p = .0003), and BD II (p = .0007). Burden and schizophrenia PRSs were increased in SAB compared with BD I with psychosis (CNV p = .0007, PRS p = .004), and BD I without psychosis (CNV p = .0004, PRS p = 3.9 × 10-5). Within BD I, psychosis was associated with increased schizophrenia PRSs (p = .005) but not CNV burden.ConclusionsCNV burden in BD is limited to SAB. Rare and common genetic variants may contribute differently to risk for psychosis and perhaps other classes of psychiatric symptoms.
- Published
- 2019
22. Management and outcomes of proteasome inhibitor associated chalazia and blepharitis: a case series.
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Sklar, Bonnie, Gervasio, Kalla, Leng, Siyang, Ghosh, Arnab, Chari, Ajai, and Wu, Albert
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Blepharitis ,Bortezomib ,Chalazia ,Chemotherapy ,Eyelid ,Multiple myeloma ,Plasma cell disorder ,Proteasome inhibitor ,Adult ,Aged ,Aged ,80 and over ,Blepharitis ,Bortezomib ,Chalazion ,Female ,Humans ,Male ,Middle Aged ,Neoplasms ,Plasma Cell ,Proteasome Inhibitors ,Retrospective Studies - Abstract
BACKGROUND: The purpose of this case series was to further characterize proteasome inhibitor associated chalazia and blepharitis, to investigate outcomes of different management strategies, and to propose a treatment algorithm for eyelid complications in this patient population. METHODS: This retrospective case series included sixteen patients found to have chalazia and/or blepharitis while receiving proteasome inhibitors for plasma cell disorders at Mount Sinai Hospital in New York, NY from January 2010 through January 2017. Main outcomes were complete resolution of eyelid complications and time to resolution. Students t-test was used to compare average values and Fishers exact test was used to compare proportions. RESULTS: Fourteen patients had chalazia and 10 had blepharitis. Chalazia averaged 5.4 mm, and 11 patients with chalazia experienced two or more lesions. Median follow-up time was 17 months. Average time from bortezomib exposure to onset of first eyelid complication was 3.4 months. Chalazia episodes were more likely to completely resolve than blepharitis episodes (p = 0.03). Ocular therapy alone was trialed for an average of 1.8 months before proceeding to bortezomib omission. Average time to eyelid complication resolution using ocular therapy alone was 1.8 months versus 3.1 months after bortezomib omission. In this series, the combination of ocular therapy and bortezomib omission led to complete resolution of eyelid complications more often than ocular therapy alone. CONCLUSION: Proteasome inhibitor associated eyelid complications were identified in sixteen patients with plasma cell disorders. Eyelid complications may be treated with a 2-month trial of conservative ocular therapies alone, followed by continuation of ocular therapy in combination with bortezomib omission if eyelid signs persist.
- Published
- 2019
23. Gene expression imputation across multiple brain regions provides insights into schizophrenia risk
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Huckins, Laura M, Dobbyn, Amanda, Ruderfer, Douglas M, Hoffman, Gabriel, Wang, Weiqing, Pardiñas, Antonio F, Rajagopal, Veera M, Als, Thomas D, T. Nguyen, Hoang, Girdhar, Kiran, Boocock, James, Roussos, Panos, Fromer, Menachem, Kramer, Robin, Domenici, Enrico, Gamazon, Eric R, Purcell, Shaun, Demontis, Ditte, Børglum, Anders D, Walters, James TR, O’Donovan, Michael C, Sullivan, Patrick, Owen, Michael J, Devlin, Bernie, Sieberts, Solveig K, Cox, Nancy J, Im, Hae Kyung, Sklar, Pamela, and Stahl, Eli A
- Subjects
Biological Sciences ,Genetics ,Mental Health ,Brain Disorders ,Human Genome ,Schizophrenia ,2.1 Biological and endogenous factors ,Aetiology ,Mental health ,Brain ,Case-Control Studies ,Gene Expression ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Genotype ,Humans ,Polymorphism ,Single Nucleotide ,Quantitative Trait Loci ,Risk ,Transcriptome ,CommonMind Consortium ,Schizophrenia Working Group of the Psychiatric Genomics Consortium ,iPSYCH-GEMS Schizophrenia Working Group ,Medical and Health Sciences ,Developmental Biology ,Agricultural biotechnology ,Bioinformatics and computational biology - Abstract
Transcriptomic imputation approaches combine eQTL reference panels with large-scale genotype data in order to test associations between disease and gene expression. These genic associations could elucidate signals in complex genome-wide association study (GWAS) loci and may disentangle the role of different tissues in disease development. We used the largest eQTL reference panel for the dorso-lateral prefrontal cortex (DLPFC) to create a set of gene expression predictors and demonstrate their utility. We applied DLPFC and 12 GTEx-brain predictors to 40,299 schizophrenia cases and 65,264 matched controls for a large transcriptomic imputation study of schizophrenia. We identified 413 genic associations across 13 brain regions. Stepwise conditioning identified 67 non-MHC genes, of which 14 did not fall within previous GWAS loci. We identified 36 significantly enriched pathways, including hexosaminidase-A deficiency, and multiple porphyric disorder pathways. We investigated developmental expression patterns among the 67 non-MHC genes and identified specific groups of pre- and postnatal expression.
- Published
- 2019
24. Comparison of Running Cutaneous Suture Spacing During Linear Wound Closures and the Effect on Wound Cosmesis of the Face and Neck
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Sklar, Lindsay R, Pourang, Aunna, Armstrong, April W, Dhaliwal, Simran K, Sivamani, Raja K, and Eisen, Daniel B
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Cancer ,Clinical Research ,Clinical Trials and Supportive Activities ,6.4 Surgery ,Evaluation of treatments and therapeutic interventions ,Aged ,Cicatrix ,Esthetics ,Facial Injuries ,Humans ,Middle Aged ,Mohs Surgery ,Risk Assessment ,Skin ,Suture Techniques ,Sutures ,Treatment Outcome ,Wound Closure Techniques ,Clinical Sciences ,Oncology and Carcinogenesis - Abstract
ImportanceSurgeons have varying opinions on the ideal cutaneous suture spacing for optimal cosmetic outcomes. To date, no studies concerning the effect of suture spacing on cosmetic outcomes exist in the literature.ObjectiveTo compare outcomes and wound cosmesis achieved with running cutaneous sutures spaced 2 vs 5 mm apart.Design, setting, and participantsThis randomized clinical trial was conducted at the University of California, Davis dermatology clinic from November 28, 2017, to June 15, 2018. Fifty-six patients 18 years or older with surgical fusiform wounds (from Mohs procedure or surgical excision) on the head or neck with assumed closure lengths of at least 3 cm were screened. Six patients were excluded, 50 patients were enrolled, and 48 patients were followed up.InterventionsFifty surgical fusiform wounds were randomized to running cuticular closure with 2-mm spacing on half and 5-mm spacing on half.Main outcomes and measuresAt 3 months, patients and 2 masked observers evaluated each scar using the Patient and Observer Scar Assessment Scale (POSAS).ResultsA total of 50 patients (mean [SD] age, 71.1 [11.4] years; 43 [86%] male; 50 [100%] white) were enrolled in the study. The mean (SD) sum of the POSAS observer component scores was 10.7 (4.3) for the 2-mm interval side and 10.8 (3.5) for the 5-mm side at 3 months (P = .77). No statistically significant difference was found in the mean (SD) sum of the patient component for the POSAS score between the 2-mm interval side (10.2 [4.7]) and the 5-mm interval side (11.5 [6.4]) at 3 months (P = .24). No statistically significant difference was observed in mean (SD) scar width between the 2-mm side (0.9 [0.6] mm) and the 5-mm side (0.8 [0.4] mm; P = .15).Conclusions and relevanceNo statistically significant difference in wound cosmesis or total complications were noted between running cuticular sutures spaced 2 vs 5 mm apart. Both suturing techniques resulted in similar cosmetic outcomes and complication rates. Surgeons may want to consider whether the extra time involved in placing very closely spaced cuticular sutures is worthwhile.Trial registrationClinicalTrials.gov identifier: NCT03330041.
- Published
- 2019
25. Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.
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Demontis, Ditte, Walters, Raymond K, Martin, Joanna, Mattheisen, Manuel, Als, Thomas D, Agerbo, Esben, Baldursson, Gísli, Belliveau, Rich, Bybjerg-Grauholm, Jonas, Bækvad-Hansen, Marie, Cerrato, Felecia, Chambert, Kimberly, Churchhouse, Claire, Dumont, Ashley, Eriksson, Nicholas, Gandal, Michael, Goldstein, Jacqueline I, Grasby, Katrina L, Grove, Jakob, Gudmundsson, Olafur O, Hansen, Christine S, Hauberg, Mads Engel, Hollegaard, Mads V, Howrigan, Daniel P, Huang, Hailiang, Maller, Julian B, Martin, Alicia R, Martin, Nicholas G, Moran, Jennifer, Pallesen, Jonatan, Palmer, Duncan S, Pedersen, Carsten Bøcker, Pedersen, Marianne Giørtz, Poterba, Timothy, Poulsen, Jesper Buchhave, Ripke, Stephan, Robinson, Elise B, Satterstrom, F Kyle, Stefansson, Hreinn, Stevens, Christine, Turley, Patrick, Walters, G Bragi, Won, Hyejung, Wright, Margaret J, ADHD Working Group of the Psychiatric Genomics Consortium (PGC), Early Lifecourse & Genetic Epidemiology (EAGLE) Consortium, 23andMe Research Team, Andreassen, Ole A, Asherson, Philip, Burton, Christie L, Boomsma, Dorret I, Cormand, Bru, Dalsgaard, Søren, Franke, Barbara, Gelernter, Joel, Geschwind, Daniel, Hakonarson, Hakon, Haavik, Jan, Kranzler, Henry R, Kuntsi, Jonna, Langley, Kate, Lesch, Klaus-Peter, Middeldorp, Christel, Reif, Andreas, Rohde, Luis Augusto, Roussos, Panos, Schachar, Russell, Sklar, Pamela, Sonuga-Barke, Edmund JS, Sullivan, Patrick F, Thapar, Anita, Tung, Joyce Y, Waldman, Irwin D, Medland, Sarah E, Stefansson, Kari, Nordentoft, Merete, Hougaard, David M, Werge, Thomas, Mors, Ole, Mortensen, Preben Bo, Daly, Mark J, Faraone, Stephen V, Børglum, Anders D, and Neale, Benjamin M
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ADHD Working Group of the Psychiatric Genomics Consortium ,Early Lifecourse & Genetic Epidemiology (EAGLE) Consortium ,23andMe Research Team ,Brain ,Humans ,Genetic Predisposition to Disease ,Risk ,Cohort Studies ,Attention Deficit Disorder with Hyperactivity ,Gene Expression Regulation ,Polymorphism ,Single Nucleotide ,Adolescent ,Child ,Child ,Preschool ,Female ,Male ,Genome-Wide Association Study ,Genetic Loci ,Clinical Research ,Mental Health ,Human Genome ,Pediatric ,Prevention ,Genetics ,Brain Disorders ,Attention Deficit Hyperactivity Disorder (ADHD) ,Behavioral and Social Science ,Aetiology ,2.1 Biological and endogenous factors ,Mental health ,Biological Sciences ,Medical and Health Sciences ,Developmental Biology - Abstract
Attention deficit/hyperactivity disorder (ADHD) is a highly heritable childhood behavioral disorder affecting 5% of children and 2.5% of adults. Common genetic variants contribute substantially to ADHD susceptibility, but no variants have been robustly associated with ADHD. We report a genome-wide association meta-analysis of 20,183 individuals diagnosed with ADHD and 35,191 controls that identifies variants surpassing genome-wide significance in 12 independent loci, finding important new information about the underlying biology of ADHD. Associations are enriched in evolutionarily constrained genomic regions and loss-of-function intolerant genes and around brain-expressed regulatory marks. Analyses of three replication studies: a cohort of individuals diagnosed with ADHD, a self-reported ADHD sample and a meta-analysis of quantitative measures of ADHD symptoms in the population, support these findings while highlighting study-specific differences on genetic overlap with educational attainment. Strong concordance with GWAS of quantitative population measures of ADHD symptoms supports that clinical diagnosis of ADHD is an extreme expression of continuous heritable traits.
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- 2019
26. High-Throughput Flow Cytometry Identifies Small-Molecule Inhibitors for Drug Repurposing in T-ALL.
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Perez, Dominique R, Nickl, Christian K, Waller, Anna, Delgado-Martin, Cristina, Woods, Travis, Sharma, Nitesh D, Hermiston, Michelle L, Loh, Mignon L, Hunger, Stephen P, Winter, Stuart S, Chigaev, Alexandre, Edwards, Bruce, Sklar, Larry A, and Matlawska-Wasowska, Ksenia
- Subjects
Cell Line ,Tumor ,Animals ,Humans ,Mice ,Antineoplastic Agents ,Protein Kinase Inhibitors ,Flow Cytometry ,Dose-Response Relationship ,Drug ,Precursor T-Cell Lymphoblastic Leukemia-Lymphoma ,Small Molecule Libraries ,Drug Discovery ,High-Throughput Screening Assays ,Drug Repositioning ,T-ALL ,high-throughput screening ,hypoxia ,kinase inhibitors ,leukemia ,Pediatric ,Biotechnology ,Rare Diseases ,Orphan Drug ,Cancer ,Hematology ,Pediatric Cancer ,5.1 Pharmaceuticals ,Development of treatments and therapeutic interventions - Abstract
Kinase inhibitors have dramatically increased patient survival in a multitude of cancers, including hematological malignancies. However, kinase inhibitors have not yet been integrated into current clinical trials for patients with T-cell-lineage acute lymphoblastic leukemia (T-ALL). In this study, we used a high-throughput flow cytometry (HTFC) approach to test a collection of small-molecule inhibitors, including 26 FDA-approved tyrosine kinase inhibitors in a panel of T-ALL cell lines and patient-derived xenografts. Because hypoxia is known to cause resistance to chemotherapy, we developed a synthetic niche that mimics the low oxygen levels found in leukemic bone marrow to evaluate the effects of hypoxia on the tested inhibitors. Drug sensitivity screening was performed using the Agilent BioCel automated liquid handling system integrated with the HyperCyt HT flow cytometry platform, and the uptake of propidium iodide was used as an indication of cell viability. The HTFC dose-response testing identified several compounds that were efficacious in both normal and hypoxic conditions. This study shows that some clinically approved kinase inhibitors target T-ALL in the hypoxic niche of the bone marrow.
- Published
- 2018
27. Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection
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Pardiñas, Antonio F, Holmans, Peter, Pocklington, Andrew J, Escott-Price, Valentina, Ripke, Stephan, Carrera, Noa, Legge, Sophie E, Bishop, Sophie, Cameron, Darren, Hamshere, Marian L, Han, Jun, Hubbard, Leon, Lynham, Amy, Mantripragada, Kiran, Rees, Elliott, MacCabe, James H, McCarroll, Steven A, Baune, Bernhard T, Breen, Gerome, Byrne, Enda M, Dannlowski, Udo, Eley, Thalia C, Hayward, Caroline, Martin, Nicholas G, McIntosh, Andrew M, Plomin, Robert, Porteous, David J, Wray, Naomi R, Caballero, Armando, Geschwind, Daniel H, Huckins, Laura M, Ruderfer, Douglas M, Santiago, Enrique, Sklar, Pamela, Stahl, Eli A, Won, Hyejung, Agerbo, Esben, Als, Thomas D, Andreassen, Ole A, Bækvad-Hansen, Marie, Mortensen, Preben Bo, Pedersen, Carsten Bøcker, Børglum, Anders D, Bybjerg-Grauholm, Jonas, Djurovic, Srdjan, Durmishi, Naser, Pedersen, Marianne Giørtz, Golimbet, Vera, Grove, Jakob, Hougaard, David M, Mattheisen, Manuel, Molden, Espen, Mors, Ole, Nordentoft, Merete, Pejovic-Milovancevic, Milica, Sigurdsson, Engilbert, Silagadze, Teimuraz, Hansen, Christine Søholm, Stefansson, Kari, Stefansson, Hreinn, Steinberg, Stacy, Tosato, Sarah, Werge, Thomas, GERAD1 Consortium, CRESTAR Consortium, Collier, David A, Rujescu, Dan, Kirov, George, Owen, Michael J, O’Donovan, Michael C, and Walters, James TR
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Serious Mental Illness ,Brain Disorders ,Human Genome ,Genetics ,Mental Health ,Biotechnology ,Schizophrenia ,2.1 Biological and endogenous factors ,Aetiology ,Mental health ,Good Health and Well Being ,Alleles ,Case-Control Studies ,Gene Frequency ,Genes ,Lethal ,Genetic Loci ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Humans ,Inheritance Patterns ,Polymorphism ,Single Nucleotide ,Selection ,Genetic ,GERAD1 Consortium ,CRESTAR Consortium ,Biological Sciences ,Medical and Health Sciences ,Developmental Biology - Abstract
Schizophrenia is a debilitating psychiatric condition often associated with poor quality of life and decreased life expectancy. Lack of progress in improving treatment outcomes has been attributed to limited knowledge of the underlying biology, although large-scale genomic studies have begun to provide insights. We report a new genome-wide association study of schizophrenia (11,260 cases and 24,542 controls), and through meta-analysis with existing data we identify 50 novel associated loci and 145 loci in total. Through integrating genomic fine-mapping with brain expression and chromosome conformation data, we identify candidate causal genes within 33 loci. We also show for the first time that the common variant association signal is highly enriched among genes that are under strong selective pressures. These findings provide new insights into the biology and genetic architecture of schizophrenia, highlight the importance of mutation-intolerant genes and suggest a mechanism by which common risk variants persist in the population.
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- 2018
28. Long‐term sequelae in survivors of childhood leukemia with Down syndrome: A childhood cancer survivor study report
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Goldsby, Robert E, Stratton, Kayla L, Raber, Shannon, Ablin, Arthur, Strong, Louise C, Oeffinger, Kevin, Sklar, Charles A, Armstrong, Gregory T, Robison, Leslie L, Bhatia, Smita, and Leisenring, Wendy M
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Pediatric ,Rare Diseases ,Rehabilitation ,Intellectual and Developmental Disabilities (IDD) ,Pediatric Research Initiative ,Hematology ,Prevention ,Brain Disorders ,Pediatric Cancer ,Cancer ,Clinical Research ,Childhood Leukemia ,Down Syndrome ,2.1 Biological and endogenous factors ,Aetiology ,Adolescent ,Adult ,Cancer Survivors ,Child ,Chronic Disease ,Female ,Humans ,Leukemia ,Male ,Middle Aged ,Neoplasms ,Second Primary ,Proportional Hazards Models ,Young Adult ,Down syndrome ,leukemia ,late effects ,chronic conditions ,survivorship ,Oncology and Carcinogenesis ,Public Health and Health Services ,Oncology & Carcinogenesis - Abstract
BackgroundChildren with Down syndrome (DS) are at increased risk of developing acute leukemia and are more prone to acute toxicities. We studied the incidence and severity of chronic health conditions among survivors of childhood leukemia with DS compared with those without DS.MethodsChronic health conditions reported by questionnaire were compared between 154 pediatric leukemia survivors with DS and 581 without DS, matched by leukemia, age at diagnosis, race/ethnicity, sex, radiation location and chemotherapy exposure using Cox models to estimate hazard ratios (HRs) and 95% confidence intervals (CIs). Subjects were selected from 7139 5-year survivors of leukemia in the Childhood Cancer Survivor Study.ResultsRisk of at least 1 late onset chronic health condition (grade 1-5) was similar in the DS population compared with the non-DS group (HR, 1.1; 95% CI, 0.7-1.5). Serious chronic health conditions (grade 3-5) were more common in DS survivors (HR, 1.7; 95% CI, 1.1-2.6), as were ≥ 3 chronic health conditions (grades 1-5) (HR, 1.7; 95% CI, 1.2-2.4). The 25-year cumulative incidence of any condition (grades 1-5) was 83% for DS survivors and 69% for non-DS survivors.ConclusionLeukemia survivors with DS have therapy-related chronic health conditions comparable to those of similarly treated survivors without DS, with a few notable exceptions: 1) an increased risk of cataracts, hearing loss, and thyroid dysfunction compared with survivors without DS (though these are known risks in the DS population), 2) decreased risk of second cancers, and 3) increased risk of severe or multiple conditions. Practitioners should be aware of these risks during and after therapy. Cancer 2018;124:617-25. © 2017 American Cancer Society.
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- 2018
29. “Scaling-out” evidence-based interventions to new populations or new health care delivery systems
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Aarons, Gregory A, Sklar, Marisa, Mustanski, Brian, Benbow, Nanette, and Brown, C Hendricks
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Biomedical and Clinical Sciences ,Psychology ,Clinical Research ,Comparative Effectiveness Research ,Generic health relevance ,Good Health and Well Being ,Delivery of Health Care ,Evidence-Based Medicine ,Health Plan Implementation ,Humans ,Scaling-out ,Scaling-up ,Delivery system fixed ,Population fixed ,Implementation science ,Evidence-based intervention ,Intervention adaptation ,External validity ,Multilevel mediation modeling ,Effectiveness ,Mediational equivalence ,Information and Computing Sciences ,Medical and Health Sciences ,Health Policy & Services ,Biomedical and clinical sciences - Abstract
BackgroundImplementing treatments and interventions with demonstrated effectiveness is critical for improving patient health outcomes at a reduced cost. When an evidence-based intervention (EBI) is implemented with fidelity in a setting that is very similar to the setting wherein it was previously found to be effective, it is reasonable to anticipate similar benefits of that EBI. However, one goal of implementation science is to expand the use of EBIs as broadly as is feasible and appropriate in order to foster the greatest public health impact. When implementing an EBI in a novel setting, or targeting novel populations, one must consider whether there is sufficient justification that the EBI would have similar benefits to those found in earlier trials.DiscussionIn this paper, we introduce a new concept for implementation called "scaling-out" when EBIs are adapted either to new populations or new delivery systems, or both. Using existing external validity theories and multilevel mediation modeling, we provide a logical framework for determining what new empirical evidence is required for an intervention to retain its evidence-based standard in this new context. The motivating questions are whether scale-out can reasonably be expected to produce population-level effectiveness as found in previous studies, and what additional empirical evaluations would be necessary to test for this short of an entirely new effectiveness trial. We present evaluation options for assessing whether scaling-out results in the ultimate health outcome of interest.ConclusionIn scaling to health or service delivery systems or population/community contexts that are different from the setting where the EBI was originally tested, there are situations where a shorter timeframe of translation is possible. We argue that implementation of an EBI in a moderately different setting or with a different population can sometimes "borrow strength" from evidence of impact in a prior effectiveness trial. The collection of additional empirical data is deemed necessary by the nature and degree of adaptations to the EBI and the context. Our argument in this paper is conceptual, and we propose formal empirical tests of mediational equivalence in a follow-up paper.
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- 2017
30. Longitudinal follow‐up of adult survivors of Ewing sarcoma: A report from the Childhood Cancer Survivor Study
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Marina, Neyssa M, Liu, Qi, Donaldson, Sarah S, Sklar, Charles A, Armstrong, Gregory T, Oeffinger, Kevin C, Leisenring, Wendy M, Ginsberg, Jill P, Henderson, Tara O, Neglia, Joseph P, Stovall, Marilyn A, Yasui, Yutaka, Randall, R Lor, Geller, David S, Robison, Leslie L, and Ness, Kirsten K
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Rare Diseases ,Cancer ,Hematology ,Pediatric ,Pediatric Research Initiative ,Prevention ,Pediatric Cancer ,2.4 Surveillance and distribution ,Aetiology ,Good Health and Well Being ,Adolescent ,Adult ,Anthracyclines ,Antineoplastic Agents ,Bone Neoplasms ,Breast Neoplasms ,Child ,Chronic Disease ,Cohort Studies ,Female ,Follow-Up Studies ,Heart Diseases ,Humans ,Leukemia ,Myeloid ,Acute ,Longitudinal Studies ,Male ,Middle Aged ,Mortality ,Musculoskeletal Diseases ,Neoplasm Recurrence ,Local ,Neoplasms ,Second Primary ,Orthopedic Procedures ,Osteosarcoma ,Radiotherapy ,Retrospective Studies ,Sarcoma ,Ewing ,Survivors ,Thyroid Neoplasms ,Young Adult ,Ewing sarcoma ,childhood cancer survivors ,chronic health conditions ,late mortality ,treatment-related complications ,Oncology and Carcinogenesis ,Public Health and Health Services ,Oncology & Carcinogenesis - Abstract
BackgroundEwing sarcoma survivors (ESSs) are at increased risk for treatment-related complications. The incidence of treatment-related morbidity and late mortality with aging is unknown.MethodsThis study reports survival probabilities, estimated with the Kaplan-Meier method, and the cumulative incidence of cause-specific mortality and chronic conditions among ESSs in the Childhood Cancer Survivor Study who were treated between 1970 and 1986. Piecewise exponential models were used to estimate relative rates (RRs) and 95% confidence intervals (CIs) for these outcomes. Chronic conditions were graded with the Common Terminology Criteria for Adverse Events (version 4.03).ResultsAmong 404 5-year ESSs (median age at last follow-up, 34.8 years; range, 9.1-54.8 years), the 35-year survival rate was 70% (95% CI, 66%-74%). Late recurrence (cumulative incidence at 35 years, 15.1%) was the most common cause of death, and it was followed by treatment-related causes (11.2%). There were 53 patients with subsequent neoplasms (SNs; cumulative incidence at 35 years, 24.0%), and 38 were malignant (14.3% at 35 years). The standardized incidence ratios were 377.1 (95% CI, 172.1-715.9) for osteosarcoma, 28.9 (95% CI, 3.2-104.2) for acute myeloid leukemia, 14.9 (95% CI, 7.9-25.5) for breast cancer, and 13.1 (95% CI, 4.8-28.5) for thyroid cancer. Rates of chronic conditions were highest for musculoskeletal (RR, 18.1; 95% CI, 12.8-25.7) and cardiac complications (RR, 1.8; 95% CI, 1.4-2.3). Thirty-five years after the diagnosis, the cumulative incidences of any chronic conditions and 2 or more chronic conditions were 84.6% (95% CI, 80.4%-88.8%) and 73.8% (95% CI, 67.8%-79.9%), respectively.ConclusionsWith extended follow-up, ESSs' risk for late mortality and SNs does not plateau. Treatment-related chronic conditions develop years after therapy, and this supports the need for lifelong follow-up. Cancer 2017;123:2551-60. © 2017 American Cancer Society.
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- 2017
31. Discrepancies in Leader and Follower Ratings of Transformational Leadership: Relationship with Organizational Culture in Mental Health
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Aarons, Gregory A, Ehrhart, Mark G, Farahnak, Lauren R, Sklar, Marisa, and Horowitz, Jonathan
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Health Services and Systems ,Health Sciences ,Mental Health ,Health Services ,Clinical Research ,8.1 Organisation and delivery of services ,Health and social care services research ,Good Health and Well Being ,Adult ,Female ,Humans ,Leadership ,Male ,Mental Health Services ,Organizational Culture ,Organizational Innovation ,Surveys and Questionnaires ,Discrepancy ,Organizations ,Management ,Public sector ,Mental health ,Clinical Sciences ,Public Health and Health Services ,Psychology ,Psychiatry ,Health services and systems ,Applied and developmental psychology ,Clinical and health psychology - Abstract
The role of leadership in the management and delivery of health and allied health services is often discussed but lacks empirical research. Discrepancies are often found between leaders' self-ratings and followers' ratings of the leader. To our knowledge no research has examined leader-follower discrepancies and their association with organizational culture in mental health clinics. The current study examines congruence, discrepancy, and directionality of discrepancy in relation to organizational culture in 38 mental health teams (N = 276). Supervisors and providers completed surveys including ratings of the supervisor transformational leadership and organizational culture. Polynomial regression and response surface analysis models were computed examining the associations of leadership discrepancy and defensive organizational culture and its subscales. Discrepancies between supervisor and provider reports of transformational leadership were associated with a more negative organizational culture. Culture suffered more where supervisors rated themselves more positively than providers, in contrast to supervisors rating themselves lower than the provider ratings of the supervisor. Leadership and leader discrepancy should be a consideration in improving organizational culture and for strategic initiatives such as quality of care and the implementation and sustainment of evidence-based practice.
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- 2017
32. Evidence for genetic heterogeneity between clinical subtypes of bipolar disorder.
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Charney, AW, Ruderfer, DM, Stahl, EA, Moran, JL, Chambert, K, Belliveau, RA, Forty, L, Gordon-Smith, K, Di Florio, A, Lee, PH, Bromet, EJ, Buckley, PF, Escamilla, MA, Fanous, AH, Fochtmann, LJ, Lehrer, DS, Malaspina, D, Marder, SR, Morley, CP, Nicolini, H, Perkins, DO, Rakofsky, JJ, Rapaport, MH, Medeiros, H, Sobell, JL, Green, EK, Backlund, L, Bergen, SE, Juréus, A, Schalling, M, Lichtenstein, P, Roussos, P, Knowles, JA, Jones, I, Jones, LA, Hultman, CM, Perlis, RH, Purcell, SM, McCarroll, SA, Pato, CN, Pato, MT, Craddock, N, Landén, M, Smoller, JW, and Sklar, P
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Chromosomes ,Human ,Pair 10 ,Humans ,Aminopeptidases ,Ankyrins ,Calmodulin-Binding Proteins ,Calcium Channels ,L-Type ,Cytoskeletal Proteins ,Nerve Tissue Proteins ,Nuclear Proteins ,Case-Control Studies ,Bipolar Disorder ,Psychotic Disorders ,Genotype ,Phenotype ,Polymorphism ,Single Nucleotide ,Genome-Wide Association Study ,Chromosomes ,Human ,Pair 10 ,Calcium Channels ,L-Type ,Polymorphism ,Single Nucleotide ,Clinical Sciences ,Public Health and Health Services ,Psychology - Abstract
We performed a genome-wide association study of 6447 bipolar disorder (BD) cases and 12 639 controls from the International Cohort Collection for Bipolar Disorder (ICCBD). Meta-analysis was performed with prior results from the Psychiatric Genomics Consortium Bipolar Disorder Working Group for a combined sample of 13 902 cases and 19 279 controls. We identified eight genome-wide significant, associated regions, including a novel associated region on chromosome 10 (rs10884920; P=3.28 × 10-8) that includes the brain-enriched cytoskeleton protein adducin 3 (ADD3), a non-coding RNA, and a neuropeptide-specific aminopeptidase P (XPNPEP1). Our large sample size allowed us to test the heritability and genetic correlation of BD subtypes and investigate their genetic overlap with schizophrenia and major depressive disorder. We found a significant difference in heritability of the two most common forms of BD (BD I SNP-h2=0.35; BD II SNP-h2=0.25; P=0.02). The genetic correlation between BD I and BD II was 0.78, whereas the genetic correlation was 0.97 when BD cohorts containing both types were compared. In addition, we demonstrated a significantly greater load of polygenic risk alleles for schizophrenia and BD in patients with BD I compared with patients with BD II, and a greater load of schizophrenia risk alleles in patients with the bipolar type of schizoaffective disorder compared with patients with either BD I or BD II. These results point to a partial difference in the genetic architecture of BD subtypes as currently defined.
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- 2017
33. Translating genome-wide association findings into new therapeutics for psychiatry
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Breen, Gerome, Li, Qingqin, Roth, Bryan L, O'Donnell, Patricio, Didriksen, Michael, Dolmetsch, Ricardo, O'Reilly, Paul F, Gaspar, Héléna A, Manji, Husseini, Huebel, Christopher, Kelsoe, John R, Malhotra, Dheeraj, Bertolino, Alessandro, Posthuma, Danielle, Sklar, Pamela, Kapur, Shitij, Sullivan, Patrick F, Collier, David A, and Edenberg, Howard J
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Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,Human Genome ,Genetics ,Biotechnology ,Mental Health ,Brain Disorders ,Mental health ,Good Health and Well Being ,Animals ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Humans ,Mental Disorders ,Polymorphism ,Single Nucleotide ,Psychiatry ,Risk Assessment ,Neurosciences ,Psychology ,Cognitive Sciences ,Neurology & Neurosurgery ,Biological psychology - Abstract
Genome-wide association studies (GWAS) in psychiatry, once they reach sufficient sample size and power, have been enormously successful. The Psychiatric Genomics Consortium (PGC) aims for mega-analyses with sample sizes that will grow to >1 million individuals in the next 5 years. This should lead to hundreds of new findings for common genetic variants across nine psychiatric disorders studied by the PGC. The new targets discovered by GWAS have the potential to restart largely stalled psychiatric drug development pipelines, and the translation of GWAS findings into the clinic is a key aim of the recently funded phase 3 of the PGC. This is not without considerable technical challenges. These approaches complement the other main aim of GWAS studies, risk prediction approaches for improving detection, differential diagnosis, and clinical trial design. This paper outlines the motivations, technical and analytical issues, and the plans for translating PGC phase 3 findings into new therapeutics.
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- 2016
34. Analysis of protein-coding genetic variation in 60,706 humans.
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Lek, Monkol, Karczewski, Konrad J, Minikel, Eric V, Samocha, Kaitlin E, Banks, Eric, Fennell, Timothy, O'Donnell-Luria, Anne H, Ware, James S, Hill, Andrew J, Cummings, Beryl B, Tukiainen, Taru, Birnbaum, Daniel P, Kosmicki, Jack A, Duncan, Laramie E, Estrada, Karol, Zhao, Fengmei, Zou, James, Pierce-Hoffman, Emma, Berghout, Joanne, Cooper, David N, Deflaux, Nicole, DePristo, Mark, Do, Ron, Flannick, Jason, Fromer, Menachem, Gauthier, Laura, Goldstein, Jackie, Gupta, Namrata, Howrigan, Daniel, Kiezun, Adam, Kurki, Mitja I, Moonshine, Ami Levy, Natarajan, Pradeep, Orozco, Lorena, Peloso, Gina M, Poplin, Ryan, Rivas, Manuel A, Ruano-Rubio, Valentin, Rose, Samuel A, Ruderfer, Douglas M, Shakir, Khalid, Stenson, Peter D, Stevens, Christine, Thomas, Brett P, Tiao, Grace, Tusie-Luna, Maria T, Weisburd, Ben, Won, Hong-Hee, Yu, Dongmei, Altshuler, David M, Ardissino, Diego, Boehnke, Michael, Danesh, John, Donnelly, Stacey, Elosua, Roberto, Florez, Jose C, Gabriel, Stacey B, Getz, Gad, Glatt, Stephen J, Hultman, Christina M, Kathiresan, Sekar, Laakso, Markku, McCarroll, Steven, McCarthy, Mark I, McGovern, Dermot, McPherson, Ruth, Neale, Benjamin M, Palotie, Aarno, Purcell, Shaun M, Saleheen, Danish, Scharf, Jeremiah M, Sklar, Pamela, Sullivan, Patrick F, Tuomilehto, Jaakko, Tsuang, Ming T, Watkins, Hugh C, Wilson, James G, Daly, Mark J, MacArthur, Daniel G, and Exome Aggregation Consortium
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Exome Aggregation Consortium ,Humans ,Rare Diseases ,Proteome ,Sample Size ,DNA Mutational Analysis ,Phenotype ,Genetic Variation ,Exome ,Datasets as Topic ,Clinical Research ,Biotechnology ,Human Genome ,Genetics ,Genetic Testing ,2.1 Biological and endogenous factors ,Aetiology ,Generic health relevance ,General Science & Technology - Abstract
Large-scale reference data sets of human genetic variation are critical for the medical and functional interpretation of DNA sequence changes. Here we describe the aggregation and analysis of high-quality exome (protein-coding region) DNA sequence data for 60,706 individuals of diverse ancestries generated as part of the Exome Aggregation Consortium (ExAC). This catalogue of human genetic diversity contains an average of one variant every eight bases of the exome, and provides direct evidence for the presence of widespread mutational recurrence. We have used this catalogue to calculate objective metrics of pathogenicity for sequence variants, and to identify genes subject to strong selection against various classes of mutation; identifying 3,230 genes with near-complete depletion of predicted protein-truncating variants, with 72% of these genes having no currently established human disease phenotype. Finally, we demonstrate that these data can be used for the efficient filtering of candidate disease-causing variants, and for the discovery of human 'knockout' variants in protein-coding genes.
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- 2016
35. Nicotine dependence and psychosis in Bipolar disorder and Schizoaffective disorder, Bipolar type.
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Estrada, Elena, Hartz, Sarah M, Tran, Jeffrey, Hilty, Donald M, Sklar, Pamela, Smoller, Jordan W, Genomic Psychiatry Cohort Consortium, Pato, Michele T, and Pato, Carlos N
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Genomic Psychiatry Cohort Consortium ,Humans ,Tobacco Use Disorder ,Logistic Models ,Bipolar Disorder ,Adult ,Female ,Male ,cigarettes ,severe mental illness ,smoking ,Prevention ,Tobacco Smoke and Health ,Mental Health ,Substance Misuse ,Brain Disorders ,Tobacco ,Serious Mental Illness ,Clinical Research ,2.3 Psychological ,social and economic factors ,Aetiology ,Mental health ,Good Health and Well Being ,Genetics ,Clinical Sciences ,Neurosciences - Abstract
Patients with Bipolar disorder smoke more than the general population. Smoking negatively impacts mortality and clinical course in Bipolar disorder patients. Prior studies have shown contradictory results regarding the impact of psychosis on smoking behavior in Bipolar disorder. We analyzed a large sample of Bipolar disorder and Schizoaffective disorder, Bipolar Type patients and predicted those with a history of psychosis would be more likely to be nicotine dependent. Data from subjects and controls were collected from the Genomic Psychiatry Cohort (GPC). Subjects were diagnosed with Bipolar disorder without psychosis (N = 610), Bipolar disorder with psychosis (N = 1544). Participants were classified with or without nicotine dependence. Diagnostic groups were compared to controls (N = 10065) using logistic regression. Among smokers (N = 6157), those with Bipolar disorder had an increased risk of nicotine dependence (OR = 2.5; P
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- 2016
36. Polygenic overlap between schizophrenia risk and antipsychotic response: a genomic medicine approach
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Ruderfer, Douglas M, Charney, Alexander W, Readhead, Ben, Kidd, Brian A, Kähler, Anna K, Kenny, Paul J, Keiser, Michael J, Moran, Jennifer L, Hultman, Christina M, Scott, Stuart A, Sullivan, Patrick F, Purcell, Shaun M, Dudley, Joel T, and Sklar, Pamela
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Biological Psychology ,Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,Psychology ,Schizophrenia ,Mental Health ,Genetics ,Prevention ,Biotechnology ,Serious Mental Illness ,Clinical Research ,Brain Disorders ,Human Genome ,5.1 Pharmaceuticals ,2.1 Biological and endogenous factors ,Evaluation of treatments and therapeutic interventions ,6.1 Pharmaceuticals ,Aetiology ,Development of treatments and therapeutic interventions ,Mental health ,Good Health and Well Being ,Antipsychotic Agents ,Case-Control Studies ,Clozapine ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Genomics ,Humans ,Multifactorial Inheritance ,Registries ,Sweden ,Treatment Outcome ,Clinical Sciences ,Public Health and Health Services ,Clinical sciences ,Applied and developmental psychology ,Clinical and health psychology - Abstract
BackgroundTherapeutic treatments for schizophrenia do not alleviate symptoms for all patients and efficacy is limited by common, often severe, side-effects. Genetic studies of disease can identify novel drug targets, and drugs for which the mechanism has direct genetic support have increased likelihood of clinical success. Large-scale genetic studies of schizophrenia have increased the number of genes and gene sets associated with risk. We aimed to examine the overlap between schizophrenia risk loci and gene targets of a comprehensive set of medications to potentially inform and improve treatment of schizophrenia.MethodsWe defined schizophrenia risk loci as genomic regions reaching genome-wide significance in the latest Psychiatric Genomics Consortium schizophrenia genome-wide association study (GWAS) of 36 989 cases and 113 075 controls and loss of function variants observed only once among 5079 individuals in an exome-sequencing study of 2536 schizophrenia cases and 2543 controls (Swedish Schizophrenia Study). Using two large and orthogonally created databases, we collated drug targets into 167 gene sets targeted by pharmacologically similar drugs and examined enrichment of schizophrenia risk loci in these sets. We further linked the exome-sequenced data with a national drug registry (the Swedish Prescribed Drug Register) to assess the contribution of rare variants to treatment response, using clozapine prescription as a proxy for treatment resistance.FindingsWe combined results from testing rare and common variation and, after correction for multiple testing, two gene sets were associated with schizophrenia risk: agents against amoebiasis and other protozoal diseases (106 genes, p=0·00046, pcorrected =0·024) and antipsychotics (347 genes, p=0·00078, pcorrected=0·046). Further analysis pointed to antipsychotics as having independent enrichment after removing genes that overlapped these two target sets. We noted significant enrichment both in known targets of antipsychotics (70 genes, p=0·0078) and novel predicted targets (277 genes, p=0·019). Patients with treatment-resistant schizophrenia had an excess of rare disruptive variants in gene targets of antipsychotics (347 genes, p=0·0067) and in genes with evidence for a role in antipsychotic efficacy (91 genes, p=0·0029).InterpretationOur results support genetic overlap between schizophrenia pathogenesis and antipsychotic mechanism of action. This finding is consistent with treatment efficacy being polygenic and suggests that single-target therapeutics might be insufficient. We provide evidence of a role for rare functional variants in antipsychotic treatment response, pointing to a subset of patients where their genetic information could inform treatment. Finally, we present a novel framework for identifying treatments from genetic data and improving our understanding of therapeutic mechanism.FundingUS National Institutes of Health.
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- 2016
37. Rare loss-of-function variants in SETD1A are associated with schizophrenia and developmental disorders
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Singh, Tarjinder, Kurki, Mitja I, Curtis, David, Purcell, Shaun M, Crooks, Lucy, McRae, Jeremy, Suvisaari, Jaana, Chheda, Himanshu, Blackwood, Douglas, Breen, Gerome, Pietiläinen, Olli, Gerety, Sebastian S, Ayub, Muhammad, Blyth, Moira, Cole, Trevor, Collier, David, Coomber, Eve L, Craddock, Nick, Daly, Mark J, Danesh, John, DiForti, Marta, Foster, Alison, Freimer, Nelson B, Geschwind, Daniel, Johnstone, Mandy, Joss, Shelagh, Kirov, Georg, Körkkö, Jarmo, Kuismin, Outi, Holmans, Peter, Hultman, Christina M, Iyegbe, Conrad, Lönnqvist, Jouko, Männikkö, Minna, McCarroll, Steve A, McGuffin, Peter, McIntosh, Andrew M, McQuillin, Andrew, Moilanen, Jukka S, Moore, Carmel, Murray, Robin M, Newbury-Ecob, Ruth, Ouwehand, Willem, Paunio, Tiina, Prigmore, Elena, Rees, Elliott, Roberts, David, Sambrook, Jennifer, Sklar, Pamela, Clair, David St, Veijola, Juha, Walters, James TR, Williams, Hywel, Sullivan, Patrick F, Hurles, Matthew E, O'Donovan, Michael C, Palotie, Aarno, Owen, Michael J, and Barrett, Jeffrey C
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Biological Psychology ,Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,Psychology ,Genetics ,Serious Mental Illness ,Human Genome ,Schizophrenia ,Biotechnology ,Brain Disorders ,Mental Health ,2.1 Biological and endogenous factors ,Aetiology ,Mental health ,Case-Control Studies ,Cohort Studies ,Female ,Finland ,Genetic Association Studies ,Genetic Predisposition to Disease ,Genetic Variation ,Histone-Lysine N-Methyltransferase ,Humans ,Male ,Neurodevelopmental Disorders ,Swedish Schizophrenia Study ,INTERVAL Study ,DDD Study ,UK10 K Consortium ,Neurosciences ,Cognitive Sciences ,Neurology & Neurosurgery ,Biological psychology - Abstract
By analyzing the whole-exome sequences of 4,264 schizophrenia cases, 9,343 controls and 1,077 trios, we identified a genome-wide significant association between rare loss-of-function (LoF) variants in SETD1A and risk for schizophrenia (P = 3.3 × 10(-9)). We found only two heterozygous LoF variants in 45,376 exomes from individuals without a neuropsychiatric diagnosis, indicating that SETD1A is substantially depleted of LoF variants in the general population. Seven of the ten individuals with schizophrenia carrying SETD1A LoF variants also had learning difficulties. We further identified four SETD1A LoF carriers among 4,281 children with severe developmental disorders and two more carriers in an independent sample of 5,720 Finnish exomes, both with notable neuropsychiatric phenotypes. Together, our observations indicate that LoF variants in SETD1A cause a range of neurodevelopmental disorders, including schizophrenia. Combining these data with previous common variant evidence, we suggest that epigenetic dysregulation, specifically in the histone H3K4 methylation pathway, is an important mechanism in the pathogenesis of schizophrenia.
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- 2016
38. The PsychENCODE project
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Akbarian, Schahram, Liu, Chunyu, Knowles, James A, Vaccarino, Flora M, Farnham, Peggy J, Crawford, Gregory E, Jaffe, Andrew E, Pinto, Dalila, Dracheva, Stella, Geschwind, Daniel H, Mill, Jonathan, Nairn, Angus C, Abyzov, Alexej, Pochareddy, Sirisha, Prabhakar, Shyam, Weissman, Sherman, Sullivan, Patrick F, State, Matthew W, Weng, Zhiping, Peters, Mette A, White, Kevin P, Gerstein, Mark B, Amiri, Anahita, Armoskus, Chris, Ashley-Koch, Allison E, Bae, Taejeong, Beckel-Mitchener, Andrea, Berman, Benjamin P, Coetzee, Gerhard A, Coppola, Gianfilippo, Francoeur, Nancy, Fromer, Menachem, Gao, Robert, Grennan, Kay, Herstein, Jennifer, Kavanagh, David H, Ivanov, Nikolay A, Jiang, Yan, Kitchen, Robert R, Kozlenkov, Alexey, Kundakovic, Marija, Li, Mingfeng, Li, Zhen, Liu, Shuang, Mangravite, Lara M, Mattei, Eugenio, Markenscoff-Papadimitriou, Eirene, Navarro, Fábio CP, North, Nicole, Omberg, Larsson, Panchision, David, Parikshak, Neelroop, Poschmann, Jeremie, Price, Amanda J, Purcaro, Michael, Reddy, Timothy E, Roussos, Panos, Schreiner, Shannon, Scuderi, Soraya, Sebra, Robert, Shibata, Mikihito, Shieh, Annie W, Skarica, Mario, Sun, Wenjie, Swarup, Vivek, Thomas, Amber, Tsuji, Junko, van Bakel, Harm, Wang, Daifeng, Wang, Yongjun, Wang, Kai, Werling, Donna M, Willsey, A Jeremy, Witt, Heather, Won, Hyejung, Wong, Chloe CY, Wray, Gregory A, Wu, Emily Y, Xu, Xuming, Yao, Lijing, Senthil, Geetha, Lehner, Thomas, Sklar, Pamela, and Sestan, Nenad
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Biotechnology ,Human Genome ,Brain Disorders ,Genetics ,Mental Health ,Serious Mental Illness ,Neurosciences ,Schizophrenia ,Intellectual and Developmental Disabilities (IDD) ,Autism ,2.1 Biological and endogenous factors ,1.1 Normal biological development and functioning ,Underpinning research ,Aetiology ,Mental health ,Animals ,Brain ,Chromosome Mapping ,Epigenesis ,Genetic ,Genetic Code ,Humans ,Mental Disorders ,Transcriptome ,PsychENCODE Consortium ,Psychology ,Cognitive Sciences ,Neurology & Neurosurgery - Abstract
Recent research on disparate psychiatric disorders has implicated rare variants in genes involved in global gene regulation and chromatin modification, as well as many common variants located primarily in regulatory regions of the genome. Understanding precisely how these variants contribute to disease will require a deeper appreciation for the mechanisms of gene regulation in the developing and adult human brain. The PsychENCODE project aims to produce a public resource of multidimensional genomic data using tissue- and cell type–specific samples from approximately 1,000 phenotypically well-characterized, high-quality healthy and disease-affected human post-mortem brains, as well as functionally characterize disease-associated regulatory elements and variants in model systems. We are beginning with a focus on autism spectrum disorder, bipolar disorder and schizophrenia, and expect that this knowledge will apply to a wide variety of psychiatric disorders. This paper outlines the motivation and design of PsychENCODE.
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- 2015
39. Correction: Improved Detection of Common Variants Associated with Schizophrenia and Bipolar Disorder Using Pleiotropy-Informed Conditional False Discovery Rate.
- Author
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Andreassen, Ole A, Thompson, Wesley K, Schork, Andrew J, Ripke, Stephan, Mattingsdal, Morten, Kelsoe, John R, Kendler, Kenneth S, O'Donovan, Michael C, Rujescu, Dan, Werge, Thomas, Sklar, Pamela, Psychiatric Genomics Consortium (PGC), Bipolar Disorder and Schizophrenia Working Groups, Roddey, J Cooper, Chen, Chi-Hua, McEvoy, Linda, Desikan, Rahul S, Djurovic, Srdjan, and Dale, Anders M
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Psychiatric Genomics Consortium ,Bipolar Disorder and Schizophrenia Working Groups ,Humans ,Bipolar Disorder ,Schizophrenia ,Polymorphism ,Single Nucleotide ,Developmental Biology ,Genetics - Published
- 2015
40. Recurrent stroke in childhood cancer survivors
- Author
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Fullerton, Heather J, Stratton, Kayla, Mueller, Sabine, Leisenring, Wendy W, Armstrong, Greg T, Weathers, Rita E, Stovall, Marilyn, Sklar, Charles A, Goldsby, Robert E, Robison, Les L, and Krull, Kevin R
- Subjects
Biomedical and Clinical Sciences ,Neurosciences ,Clinical Sciences ,Pediatric ,Rehabilitation ,Aging ,Brain Disorders ,Pediatric Cancer ,Cancer ,Pediatric Research Initiative ,Stroke ,Prevention ,2.4 Surveillance and distribution ,Aetiology ,Adolescent ,Adult ,Child ,Child ,Preschool ,Cohort Studies ,Female ,Follow-Up Studies ,Humans ,Infant ,Longitudinal Studies ,Male ,Middle Aged ,Neoplasms ,Recurrence ,Retrospective Studies ,Survivors ,Young Adult ,Cognitive Sciences ,Neurology & Neurosurgery ,Clinical sciences - Abstract
ObjectiveTo estimate the rates and predictors of recurrent stroke among survivors of pediatric cancer who have had a first stroke.MethodsThe Childhood Cancer Survivor Study is a retrospective cohort study with longitudinal follow-up that enrolled 14,358 survivors (
- Published
- 2015
41. Intestinal Obstruction in Survivors of Childhood Cancer: A Report From the Childhood Cancer Survivor Study
- Author
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Madenci, Arin L, Fisher, Stacey, Diller, Lisa R, Goldsby, Robert E, Leisenring, Wendy M, Oeffinger, Kevin C, Robison, Leslie L, Sklar, Charles A, Stovall, Marilyn, Weathers, Rita E, Armstrong, Gregory T, Yasui, Yutaka, and Weldon, Christopher B
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Clinical Research ,Rare Diseases ,Digestive Diseases ,Cancer ,Prevention ,Management of diseases and conditions ,7.1 Individual care needs ,Adolescent ,Adult ,Child ,Child ,Preschool ,Cohort Studies ,Female ,Humans ,Incidence ,Infant ,Infant ,Newborn ,Intestinal Obstruction ,Male ,Neoplasms ,Survivors ,Clinical Sciences ,Oncology and Carcinogenesis ,Oncology & Carcinogenesis - Abstract
PurposeFor adult survivors of childhood cancer, knowledge about the long-term risk of intestinal obstruction from surgery, chemotherapy, and radiotherapy is limited.MethodsIntestinal obstruction requiring surgery (IOS) occurring 5 or more years after cancer diagnosis was evaluated in 12,316 5-year survivors in the Childhood Cancer Survivor Study (2,002 with and 10,314 without abdominopelvic tumors) and 4,023 sibling participants. Cumulative incidence of IOS was calculated with second malignant neoplasm, late recurrence, and death as competing risks. Using piecewise exponential models, we assessed the associations of clinical and demographic factors with rate of IOS.ResultsLate IOS was reported by 165 survivors (median age at IOS, 19 years; range, 5 to 50 years; median time from diagnosis to IOS, 13 years) and 14 siblings. The cumulative incidence of late IOS at 35 years was 5.8% (95% CI, 4.4% to 7.3%) among survivors with abdominopelvic tumors, 1.0% (95% CI, 0.7% to 1.4%) among those without abdominopelvic tumors, and 0.3% (95% CI, 0.1% to 0.5%) among siblings. Among survivors, abdominopelvic tumor (adjusted rate ratio [ARR], 3.6; 95% CI, 1.9 to 6.8; P < .001) and abdominal/pelvic radiotherapy within 5 years of cancer diagnosis (ARR, 2.4; 95% CI, 1.6 to 3.7; P < .001) increased the rate of late IOS, adjusting for diagnosis year; sex; race/ethnicity; age at diagnosis; age during follow-up (as natural cubic spline); cancer type; and chemotherapy, radiotherapy, and surgery within 5 years of cancer diagnosis. Developing late IOS increased subsequent mortality among survivors (ARR, 1.8; 95% CI, 1.1 to 2.9; P = .016), adjusting for the same factors.ConclusionThe long-term risk of IOS and its association with subsequent mortality underscore the need to promote awareness of this complication among patients and providers.
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- 2015
42. Analysis of exome sequence in 604 trios for recessive genotypes in schizophrenia.
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Rees, E, Kirov, G, Walters, JT, Richards, AL, Howrigan, D, Kavanagh, DH, Pocklington, AJ, Fromer, M, Ruderfer, DM, Georgieva, L, Carrera, N, Gormley, P, Palta, P, Williams, H, Dwyer, S, Johnson, JS, Roussos, P, Barker, DD, Banks, E, Milanova, V, Rose, SA, Chambert, K, Mahajan, M, Scolnick, EM, Moran, JL, Tsuang, MT, Glatt, SJ, Chen, WJ, Hwu, H-G, Taiwanese Trios Exome Sequencing Consortium, Neale, BM, Palotie, A, Sklar, P, Purcell, SM, McCarroll, SA, Holmans, P, Owen, MJ, and O'Donovan, MC
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Taiwanese Trios Exome Sequencing Consortium ,Humans ,Genetic Predisposition to Disease ,Case-Control Studies ,Family ,Schizophrenia ,Gene Frequency ,Genotype ,Heterozygote ,Homozygote ,Genes ,Recessive ,Female ,Male ,Exome ,Voltage-Gated Sodium Channels ,Genes ,Recessive ,Clinical Sciences ,Public Health and Health Services ,Psychology - Abstract
Genetic associations involving both rare and common alleles have been reported for schizophrenia but there have been no systematic scans for rare recessive genotypes using fully phased trio data. Here, we use exome sequencing in 604 schizophrenia proband-parent trios to investigate the role of recessive (homozygous or compound heterozygous) nonsynonymous genotypes in the disorder. The burden of recessive genotypes was not significantly increased in probands at either a genome-wide level or in any individual gene after adjustment for multiple testing. At a system level, probands had an excess of nonsynonymous compound heterozygous genotypes (minor allele frequency, MAF ⩽ 1%) in voltage-gated sodium channels (VGSCs; eight in probands and none in parents, P = 1.5 × 10(-)(4)). Previous findings of multiple de novo loss-of-function mutations in this gene family, particularly SCN2A, in autism and intellectual disability provide biological and genetic plausibility for this finding. Pointing further to the involvement of VGSCs in schizophrenia, we found that these genes were enriched for nonsynonymous mutations (MAF ⩽ 0.1%) in cases genotyped using an exome array, (5585 schizophrenia cases and 8103 controls), and that in the trios data, synaptic proteins interacting with VGSCs were also enriched for both compound heterozygosity (P = 0.018) and de novo mutations (P = 0.04). However, we were unable to replicate the specific association with compound heterozygosity at VGSCs in an independent sample of Taiwanese schizophrenia trios (N = 614). We conclude that recessive genotypes do not appear to make a substantial contribution to schizophrenia at a genome-wide level. Although multiple lines of evidence, including several from this study, suggest that rare mutations in VGSCs contribute to the disorder, in the absence of replication of the original findings regarding compound heterozygosity, this conclusion requires evaluation in a larger sample of trios.
- Published
- 2015
43. Evaluating historical candidate genes for schizophrenia
- Author
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Farrell, MS, Werge, T, Sklar, P, Owen, MJ, Ophoff, RA, O'Donovan, MC, Corvin, A, Cichon, S, and Sullivan, PF
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Human Genome ,Brain Disorders ,Mental Health ,Schizophrenia ,Genetics ,Aetiology ,2.1 Biological and endogenous factors ,Mental health ,Genetic Predisposition to Disease ,Genetic Variation ,Genome-Wide Association Study ,Genomics ,Genotype ,History ,20th Century ,History ,21st Century ,Humans ,PubMed ,Biological Sciences ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry - Abstract
Prior to the genome-wide association era, candidate gene studies were a major approach in schizophrenia genetics. In this invited review, we consider the current status of 25 historical candidate genes for schizophrenia (for example, COMT, DISC1, DTNBP1 and NRG1). The initial study for 24 of these genes explicitly evaluated common variant hypotheses about schizophrenia. Our evaluation included a meta-analysis of the candidate gene literature, incorporation of the results of the largest genomic study yet published for schizophrenia, ratings from informed researchers who have published on these genes, and ratings from 24 schizophrenia geneticists. On the basis of current empirical evidence and mostly consensual assessments of informed opinion, it appears that the historical candidate gene literature did not yield clear insights into the genetic basis of schizophrenia. A likely reason why historical candidate gene studies did not achieve their primary aims is inadequate statistical power. However, the considerable efforts embodied in these early studies unquestionably set the stage for current successes in genomic approaches to schizophrenia.
- Published
- 2015
44. Genetic pleiotropy between multiple sclerosis and schizophrenia but not bipolar disorder: differential involvement of immune-related gene loci
- Author
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Andreassen, OA, Harbo, HF, Wang, Y, Thompson, WK, Schork, AJ, Mattingsdal, M, Zuber, V, Bettella, F, Ripke, S, Kelsoe, JR, Kendler, KS, O'Donovan, MC, Sklar, P, McEvoy, LK, Desikan, RS, Lie, BA, Djurovic, S, and Dale, AM
- Subjects
Clinical Research ,Neurosciences ,Multiple Sclerosis ,Prevention ,Autoimmune Disease ,Genetics ,Schizophrenia ,Bipolar Disorder ,Brain Disorders ,Human Genome ,Mental Health ,Serious Mental Illness ,Neurodegenerative ,Aetiology ,2.1 Biological and endogenous factors ,Inflammatory and immune system ,Female ,Follow-Up Studies ,Genetic Pleiotropy ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Genotype ,HLA Antigens ,Humans ,Male ,Polymorphism ,Single Nucleotide ,false discovery rate ,HLA region ,multiple sclerosis ,polygenic pleiotropy ,schizophrenia ,Psychiatric Genomics Consortium (PGC) Bipolar Disorder and Schizophrenia Work Groups ,International Multiple Sclerosis Genetics Consortium ,Biological Sciences ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry - Abstract
Converging evidence implicates immune abnormalities in schizophrenia (SCZ), and recent genome-wide association studies (GWAS) have identified immune-related single-nucleotide polymorphisms (SNPs) associated with SCZ. Using the conditional false discovery rate (FDR) approach, we evaluated pleiotropy in SNPs associated with SCZ (n=21,856) and multiple sclerosis (MS) (n=43,879), an inflammatory, demyelinating disease of the central nervous system. Because SCZ and bipolar disorder (BD) show substantial clinical and genetic overlap, we also investigated pleiotropy between BD (n=16,731) and MS. We found significant genetic overlap between SCZ and MS and identified 21 independent loci associated with SCZ, conditioned on association with MS. This enrichment was driven by the major histocompatibility complex (MHC). Importantly, we detected the involvement of the same human leukocyte antigen (HLA) alleles in both SCZ and MS, but with an opposite directionality of effect of associated HLA alleles (that is, MS risk alleles were associated with decreased SCZ risk). In contrast, we found no genetic overlap between BD and MS. Considered together, our findings demonstrate genetic pleiotropy between SCZ and MS and suggest that the MHC signals may differentiate SCZ from BD susceptibility.
- Published
- 2015
45. Conserved Higher-Order Chromatin Regulates NMDA Receptor Gene Expression and Cognition
- Author
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Bharadwaj, Rahul, Peter, Cyril J, Jiang, Yan, Roussos, Panos, Vogel-Ciernia, Annie, Shen, Erica Y, Mitchell, Amanda C, Mao, Wenjie, Whittle, Catheryne, Dincer, Aslihan, Jakovcevski, Mira, Pothula, Venu, Rasmussen, Theodore P, Giakoumaki, Stella G, Bitsios, Panos, Sherif, Ajfar, Gardner, Paul D, Ernst, Patricia, Ghose, Subroto, Sklar, Pamela, Haroutunian, Vahram, Tamminga, Carol, Myers, Richard H, Futai, Kensuke, Wood, Marcelo A, and Akbarian, Schahram
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Human Genome ,Neurosciences ,Genetics ,1.1 Normal biological development and functioning ,Underpinning research ,Neurological ,Aged ,Aged ,80 and over ,Animals ,Animals ,Newborn ,Antipsychotic Agents ,Cells ,Cultured ,Cerebral Cortex ,Chromatin ,Cognition ,Female ,Gene Expression Regulation ,HEK293 Cells ,Humans ,Male ,Mice ,Mice ,Inbred C57BL ,Mice ,Transgenic ,Middle Aged ,Neurons ,Polymorphism ,Single Nucleotide ,Receptors ,N-Methyl-D-Aspartate ,Schizophrenia ,Signal Transduction ,Transcription Factors ,Psychology ,Cognitive Sciences ,Neurology & Neurosurgery - Abstract
Three-dimensional chromosomal conformations regulate transcription by moving enhancers and regulatory elements into spatial proximity with target genes. Here we describe activity-regulated long-range loopings bypassing up to 0.5 Mb of linear genome to modulate NMDA glutamate receptor GRIN2B expression in human and mouse prefrontal cortex. Distal intronic and 3' intergenic loop formations competed with repressor elements to access promoter-proximal sequences, and facilitated expression via a "cargo" of AP-1 and NRF-1 transcription factors and TALE-based transcriptional activators. Neuronal deletion or overexpression of Kmt2a/Mll1 H3K4- and Kmt1e/Setdb1 H3K9-methyltransferase was associated with higher-order chromatin changes at distal regulatory Grin2b sequences and impairments in working memory. Genetic polymorphisms and isogenic deletions of loop-bound sequences conferred liability for cognitive performance and decreased GRIN2B expression. Dynamic regulation of chromosomal conformations emerges as a novel layer for transcriptional mechanisms impacting neuronal signaling and cognition.
- Published
- 2014
46. Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia
- Author
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Ruderfer, DM, Fanous, AH, Ripke, S, McQuillin, A, Amdur, RL, Gejman, PV, O'Donovan, MC, Andreassen, OA, Djurovic, S, Hultman, CM, Kelsoe, JR, Jamain, S, Landén, M, Leboyer, M, Nimgaonkar, V, Nurnberger, J, Smoller, JW, Craddock, N, Corvin, A, Sullivan, PF, Holmans, P, Sklar, P, and Kendler, KS
- Subjects
Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,Brain Disorders ,Serious Mental Illness ,Genetics ,Schizophrenia ,Prevention ,Mental Health ,Bipolar Disorder ,Human Genome ,2.1 Biological and endogenous factors ,Aetiology ,Mental health ,Calcium Channels ,L-Type ,Case-Control Studies ,Cell Cycle Proteins ,Factor Analysis ,Statistical ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Humans ,Nuclear Proteins ,Odds Ratio ,Phenotype ,Phosphatidylinositol 3-Kinases ,Polymorphism ,Single Nucleotide ,Schizophrenic Psychology ,bipolar ,clinical symptoms ,cross disorder ,polygenic ,schizophrenia ,Schizophrenia Working Group of the Psychiatric Genomics Consortium ,Bipolar Disorder Working Group of the Psychiatric Genomics Consortium ,Cross-Disorder Working Group of the Psychiatric Genomics Consortium ,Biological Sciences ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry ,Clinical sciences ,Biological psychology ,Clinical and health psychology - Abstract
Bipolar disorder and schizophrenia are two often severe disorders with high heritabilities. Recent studies have demonstrated a large overlap of genetic risk loci between these disorders but diagnostic and molecular distinctions still remain. Here, we perform a combined genome-wide association study (GWAS) of 19 779 bipolar disorder (BP) and schizophrenia (SCZ) cases versus 19 423 controls, in addition to a direct comparison GWAS of 7129 SCZ cases versus 9252 BP cases. In our case-control analysis, we identify five previously identified regions reaching genome-wide significance (CACNA1C, IFI44L, MHC, TRANK1 and MAD1L1) and a novel locus near PIK3C2A. We create a polygenic risk score that is significantly different between BP and SCZ and show a significant correlation between a BP polygenic risk score and the clinical dimension of mania in SCZ patients. Our results indicate that first, combining diseases with similar genetic risk profiles improves power to detect shared risk loci and second, that future direct comparisons of BP and SCZ are likely to identify loci with significant differential effects. Identifying these loci should aid in the fundamental understanding of how these diseases differ biologically. These findings also indicate that combining clinical symptom dimensions and polygenic signatures could provide additional information that may someday be used clinically.
- Published
- 2014
47. Aligning Leadership Across Systems and Organizations to Develop a Strategic Climate for Evidence-Based Practice Implementation
- Author
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Aarons, Gregory A, Ehrhart, Mark G, Farahnak, Lauren R, and Sklar, Marisa
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Health Services ,Clinical Research ,Generic health relevance ,Good Health and Well Being ,Evidence-Based Practice ,Health Services Research ,Humans ,Leadership ,Motivation ,Organizational Culture ,Personnel Management ,Public Health ,Resource Allocation ,Translational Research ,Biomedical ,dissemination ,implementation ,evidence-based practice ,leadership ,organizational climate ,strategic climate ,system ,Public Health and Health Services - Abstract
There has been a growing impetus to bridge the gap between basic science discovery, development of evidence-based practices (EBPs), and the availability and delivery of EBPs in order to improve the public health impact of such practices. To capitalize on factors that support implementation and sustainment of EBPs, it is important to consider that health care is delivered within the outer context of public health systems and the inner context of health care organizations and work groups. Leaders play a key role in determining the nature of system and organizational contexts. This article addresses the role of leadership and actions that leaders can take at and across levels in developing a strategic climate for EBP implementation within the outer (i.e., system) and inner (i.e., organization, work group) contexts of health care. Within the framework of Edgar Schein's "climate embedding mechanisms," we describe strategies that leaders at the system, organization, and work group levels can consider and apply to develop strategic climates that support the implementation and sustainment of EBP in health care and allied health care settings.
- Published
- 2014
48. Radiation, atherosclerotic risk factors, and stroke risk in survivors of pediatric cancer: a report from the Childhood Cancer Survivor Study.
- Author
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Stratton, Kayla, Leisenring, Wendy, Weathers, Rita, Stovall, Marilyn, Armstrong, Gregory, Packer, Roger, Sklar, Charles, Bowers, Daniel, Robison, Leslie, Krull, Kevin, Mueller, Sabine, Fullerton, Heather, and Goldsby, Robert
- Subjects
Adolescent ,Adult ,Age Factors ,Atherosclerosis ,Case-Control Studies ,Child ,Child ,Preschool ,Cranial Irradiation ,Female ,Follow-Up Studies ,Humans ,Hypertension ,Incidence ,Infant ,Male ,Neoplasms ,Proportional Hazards Models ,Retrospective Studies ,Risk Factors ,Stroke ,Survivors ,Young Adult - Abstract
PURPOSE: To test the hypotheses that (1) the increased risk of stroke conferred by childhood cranial radiation therapy (CRT) persists into adulthood; and (2) atherosclerotic risk factors further increase the stroke risk in cancer survivors. METHODS AND MATERIALS: The Childhood Cancer Survivor Study is a multi-institutional retrospective cohort study of 14,358 5-year survivors of childhood cancer and 4023 randomly selected sibling controls with longitudinal follow-up. Age-adjusted incidence rates of self-reported late-occurring (≥5 years after diagnosis) first stroke were calculated. Multivariable Cox proportional hazards models were used to identify independent stroke predictors. RESULTS: During a mean follow-up of 23.3 years, 292 survivors reported a late-occurring stroke. The age-adjusted stroke rate per 100,000 person-years was 77 (95% confidence interval [CI] 62-96), compared with 9.3 (95% CI 4-23) for siblings. Treatment with CRT increased stroke risk in a dose-dependent manner: hazard ratio 5.9 (95% CI 3.5-9.9) for 30-49 Gy CRT and 11.0 (7.4-17.0) for 50+ Gy CRT. The cumulative stroke incidence in survivors treated with 50+ Gy CRT was 1.1% (95% CI 0.4-1.8%) at 10 years after diagnosis and 12% (95% CI 8.9-15.0%) at 30 years. Hypertension increased stroke hazard by 4-fold (95% CI 2.8-5.5) and in black survivors by 16-fold (95% CI 6.9-36.6). CONCLUSION: Young adult pediatric cancer survivors have an increased stroke risk that is associated with CRT in a dose-dependent manner. Atherosclerotic risk factors enhanced this risk and should be treated aggressively.
- Published
- 2013
49. Radiation, Atherosclerotic Risk Factors, and Stroke Risk in Survivors of Pediatric Cancer: A Report From the Childhood Cancer Survivor Study
- Author
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Mueller, Sabine, Fullerton, Heather J, Stratton, Kayla, Leisenring, Wendy, Weathers, Rita E, Stovall, Marilyn, Armstrong, Gregory T, Goldsby, Robert E, Packer, Roger J, Sklar, Charles A, Bowers, Daniel C, Robison, Leslie L, and Krull, Kevin R
- Subjects
Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Prevention ,Clinical Research ,Pediatric Research Initiative ,Pediatric ,Pediatric Cancer ,Aging ,Brain Disorders ,Cancer ,Stroke ,Rehabilitation ,Adolescent ,Adult ,Age Factors ,Atherosclerosis ,Case-Control Studies ,Child ,Child ,Preschool ,Cranial Irradiation ,Female ,Follow-Up Studies ,Humans ,Hypertension ,Incidence ,Infant ,Male ,Neoplasms ,Proportional Hazards Models ,Retrospective Studies ,Risk Factors ,Survivors ,Young Adult ,Other Physical Sciences ,Clinical Sciences ,Oncology & Carcinogenesis ,Oncology and carcinogenesis ,Theoretical and computational chemistry ,Medical and biological physics - Abstract
PurposeTo test the hypotheses that (1) the increased risk of stroke conferred by childhood cranial radiation therapy (CRT) persists into adulthood; and (2) atherosclerotic risk factors further increase the stroke risk in cancer survivors.Methods and materialsThe Childhood Cancer Survivor Study is a multi-institutional retrospective cohort study of 14,358 5-year survivors of childhood cancer and 4023 randomly selected sibling controls with longitudinal follow-up. Age-adjusted incidence rates of self-reported late-occurring (≥5 years after diagnosis) first stroke were calculated. Multivariable Cox proportional hazards models were used to identify independent stroke predictors.ResultsDuring a mean follow-up of 23.3 years, 292 survivors reported a late-occurring stroke. The age-adjusted stroke rate per 100,000 person-years was 77 (95% confidence interval [CI] 62-96), compared with 9.3 (95% CI 4-23) for siblings. Treatment with CRT increased stroke risk in a dose-dependent manner: hazard ratio 5.9 (95% CI 3.5-9.9) for 30-49 Gy CRT and 11.0 (7.4-17.0) for 50+ Gy CRT. The cumulative stroke incidence in survivors treated with 50+ Gy CRT was 1.1% (95% CI 0.4-1.8%) at 10 years after diagnosis and 12% (95% CI 8.9-15.0%) at 30 years. Hypertension increased stroke hazard by 4-fold (95% CI 2.8-5.5) and in black survivors by 16-fold (95% CI 6.9-36.6).ConclusionYoung adult pediatric cancer survivors have an increased stroke risk that is associated with CRT in a dose-dependent manner. Atherosclerotic risk factors enhanced this risk and should be treated aggressively.
- Published
- 2013
50. Improved detection of common variants associated with schizophrenia and bipolar disorder using pleiotropy-informed conditional false discovery rate.
- Author
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Andreassen, Ole A, Thompson, Wesley K, Schork, Andrew J, Ripke, Stephan, Mattingsdal, Morten, Kelsoe, John R, Kendler, Kenneth S, O'Donovan, Michael C, Rujescu, Dan, Werge, Thomas, Sklar, Pamela, Psychiatric Genomics Consortium (PGC), Bipolar Disorder and Schizophrenia Working Groups, Roddey, J Cooper, Chen, Chi-Hua, McEvoy, Linda, Desikan, Rahul S, Djurovic, Srdjan, and Dale, Anders M
- Subjects
Psychiatric Genomics Consortium ,Bipolar Disorder and Schizophrenia Working Groups ,Humans ,Genetic Predisposition to Disease ,Bipolar Disorder ,Schizophrenia ,Polymorphism ,Single Nucleotide ,Genome-Wide Association Study ,Developmental Biology ,Genetics - Abstract
Several lines of evidence suggest that genome-wide association studies (GWAS) have the potential to explain more of the "missing heritability" of common complex phenotypes. However, reliable methods to identify a larger proportion of single nucleotide polymorphisms (SNPs) that impact disease risk are currently lacking. Here, we use a genetic pleiotropy-informed conditional false discovery rate (FDR) method on GWAS summary statistics data to identify new loci associated with schizophrenia (SCZ) and bipolar disorders (BD), two highly heritable disorders with significant missing heritability. Epidemiological and clinical evidence suggest similar disease characteristics and overlapping genes between SCZ and BD. Here, we computed conditional Q-Q curves of data from the Psychiatric Genome Consortium (SCZ; n = 9,379 cases and n = 7,736 controls; BD: n = 6,990 cases and n = 4,820 controls) to show enrichment of SNPs associated with SCZ as a function of association with BD and vice versa with a corresponding reduction in FDR. Applying the conditional FDR method, we identified 58 loci associated with SCZ and 35 loci associated with BD below the conditional FDR level of 0.05. Of these, 14 loci were associated with both SCZ and BD (conjunction FDR). Together, these findings show the feasibility of genetic pleiotropy-informed methods to improve gene discovery in SCZ and BD and indicate overlapping genetic mechanisms between these two disorders.
- Published
- 2013
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