32,713 results on '"Research Paper"'
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2. Labor division and advantages and limits of participation in creation of intangible assets in industry 4.0: humans versus machines
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Lobova, Svetlana V., Alekseev, Alexander N., Litvinova, Tatiana N., and Sadovnikova, Natalia A.
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- 2020
- Full Text
- View/download PDF
3. Sport hunting and tourism in the twenty-second century: humans as the ultimate trophy
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Wright, Daniel William Mackenzie
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- 2019
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- View/download PDF
4. Multi-stage structure-based virtual screening approach towards identification of potential SARS-CoV-2 NSP13 helicase inhibitors
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Mahmoud A. El Hassab, Wagdy M. Eldehna, Sara T. Al-Rashood, Amal Alharbi, Razan O. Eskandrani, Hamad M. Alkahtani, Eslam B. Elkaeed, and Sahar M. Abou-Seri
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Pharmacology ,sars cov-2 nsp13 helicase ,SARS-CoV-2 ,protein-ligand interaction fingerprint ,COVID-19 ,Quantitative Structure-Activity Relationship ,structure-based pharmacophore ,General Medicine ,molecular dynamics simulations ,RM1-950 ,Molecular Dynamics Simulation ,Viral Nonstructural Proteins ,Ligands ,High-Throughput Screening Assays ,COVID-19 Drug Treatment ,Molecular Docking Simulation ,Catalytic Domain ,Exoribonucleases ,Drug Discovery ,docking ,Humans ,Therapeutics. Pharmacology ,Research Article ,Research Paper - Abstract
On account of its crucial role in the virus life cycle, SARS-COV-2 NSP13 helicase enzyme was exploited as a promising target to identify a novel potential inhibitor using multi-stage structure-based drug discovery approaches. Firstly, a 3D pharmacophore was generated based on the collected data from a protein-ligand interaction fingerprint (PLIF) study using key interactions between co-crystallised fragments and the NSP13 helicase active site. The ZINC database was screened through the generated 3D-pharmacophore retrieving 13 potential hits. All the retrieved hits exceeded the benchmark score of the co-crystallised fragments at the molecular docking step and the best five-hit compounds were selected for further analysis. Finally, a combination between molecular dynamics simulations and MM-PBSA based binding free energy calculations was conducted on the best hit (compound FWM-1) bound to NSP13 helicase enzyme, which identified FWM-1 as a potential potent NSP13 helicase inhibitor with binding free energy equals −328.6 ± 9.2 kcal/mol., Graphical Abstract
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- 2022
5. Design, synthesis, and biological evaluation of new thieno[2,3-d] pyrimidine derivatives as targeted therapy for PI3K with molecular modelling study
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Fatma M. Elmenier, Deena S. Lasheen, and Khaled A. M. Abouzid
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Pharmacology ,Models, Molecular ,Dose-Response Relationship, Drug ,Molecular Structure ,pi3k and its isoforms ,Antineoplastic Agents ,General Medicine ,molecular docking ,RM1-950 ,lipid kinase ,Phosphatidylinositol 3-Kinases ,Structure-Activity Relationship ,Pyrimidines ,Cell Line, Tumor ,Drug Design ,Drug Discovery ,thieno[2,3-d] pyrimidine ,Humans ,cancer ,Therapeutics. Pharmacology ,Drug Screening Assays, Antitumor ,Research Article ,Research Paper ,Cell Proliferation ,Phosphoinositide-3 Kinase Inhibitors - Abstract
Cancer is one of the most aggressive diseases characterised by abnormal growth and uncontrolled cell division. PI3K is a lipid kinase involved in cancer progression which makes it fruitful target for cancer control. 28 new morpholine based thieno[2,3-d] pyrimidine derivatives were designed and synthesised as anti-PI3K agents maintaining the common pharmacophoric features of several potent PI3K inhibitors. Their antiproliferative activity on NCI 60 cell lines as well as their enzymatic activity against PI3K isoforms were evaluated. Three compounds revealed good cytotoxic activities against breast cancer cell lines, especially T-47D. Compound VIb exhibited the best enzymatic inhibitory activity (72% & 84% on PI3Kβ & PI3Kγ), respectively and good activity on most NCI cell lines especially those with over expressed PI3K. Docking was carried out into PI3K active site which showed comparable binding mode to that of the PI-103 inhibitor. Compound VIb could be optimised to serve as a new chemical entity for discovering new anticancer agents., Graphical Abstract
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- 2022
6. Synthesis, biological evaluation, and molecular docking of new series of antitumor and apoptosis inducers designed as VEGFR-2 inhibitors
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Abdallah E. Abdallah, Reda R. Mabrouk, Maged Mohammed Saleh Al Ward, Sally I. Eissa, Eslam B. Elkaeed, Ahmed B. M. Mehany, Mariam A. Abo-Saif, Ola A. El-Feky, Mohamed S. Alesawy, and Mohamed Ayman El-Zahabi
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Cell Survival ,vegfr-2 ,Antineoplastic Agents ,RM1-950 ,anticancer ,Structure-Activity Relationship ,Cell Line, Tumor ,Quinoxalines ,Drug Discovery ,Humans ,Protein Kinase Inhibitors ,Nitrobenzenes ,Cell Proliferation ,multi-kinase ,Pharmacology ,Dose-Response Relationship, Drug ,Molecular Structure ,apoptosis ,General Medicine ,Vascular Endothelial Growth Factor Receptor-2 ,Molecular Docking Simulation ,pharmacophoric features ,Quinazolines ,Therapeutics. Pharmacology ,Drug Screening Assays, Antitumor ,Research Article ,Research Paper - Abstract
Based on quinazoline, quinoxaline, and nitrobenzene scaffolds and on pharmacophoric features of VEGFR-2 inhibitors, 17 novel compounds were designed and synthesised. VEGFR-2 IC50 values ranged from 60.00 to 123.85 nM for the new derivatives compared to 54.00 nM for sorafenib. Compounds 15a, 15b, and 15d showed IC50 from 17.39 to 47.10 µM against human cancer cell lines; hepatocellular carcinoma (HepG2), prostate cancer (PC3), and breast cancer (MCF-7). Meanwhile, the first in terms of VEGFR-2 inhibition was compound 15d which came second with regard to antitumor assay with IC50 = 24.10, 40.90, and 33.40 µM against aforementioned cell lines, respectively. Furthermore, Compound 15d increased apoptosis rate of HepG2 from 1.20 to 12.46% as it significantly increased levels of Caspase-3, BAX, and P53 from 49.6274, 40.62, and 42.84 to 561.427, 395.04, and 415.027 pg/mL, respectively. Moreover, 15d showed IC50 of 253 and 381 nM against HER2 and FGFR, respectively.
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- 2022
7. 2-Arylquinolines as novel anticancer agents with dual EGFR/FAK kinase inhibitory activity: synthesis, biological evaluation, and molecular modelling insights
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Mostafa M. Elbadawi, Wagdy M. Eldehna, Amer Ali Abd El-Hafeez, Warda R. Somaa, Amgad Albohy, Sara T. Al-Rashood, Keli K. Agama, Eslam B. Elkaeed, Pradipta Ghosh, Yves Pommier, and Manabu Abe
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Medicinal & Biomolecular Chemistry ,Quinoline ,Antineoplastic Agents ,Apoptosis ,RM1-950 ,Drug Screening Assays ,anticancer ,Dose-Response Relationship ,Structure-Activity Relationship ,Medicinal and Biomolecular Chemistry ,Models ,quinoline ,Drug Discovery ,fak inhibitors ,Humans ,Protein Kinase Inhibitors ,Cell Proliferation ,Cancer ,Pharmacology ,Cultured ,EGFR inhibitors ,Molecular Structure ,FAK inhibitors ,Molecular ,General Medicine ,Antitumor ,molecular dynamics ,Tumor Cells ,ErbB Receptors ,Focal Adhesion Kinase 1 ,Quinolines ,Biochemistry and Cell Biology ,Therapeutics. Pharmacology ,Drug ,egfr inhibitors ,Research Article ,Research Paper - Abstract
In this study, different assortments of 2-arylquinolines and 2,6-diarylquinolines have been developed. Recently, we have developed a new series of 6,7-dimethoxy-4-alkoxy-2-arylquinolines as Topoisomerase I (TOP1) inhibitors with potent anticancer activity. Utilising the SAR outputs from this study, we tried to enhance anticancer and TOP1 inhibitory activities. Though target quinolines demonstrated potent antiproliferative effect, specifically against colorectal cancer DLD-1 and HCT-116, they showed weak TOP1 inhibition which may be attributable to their non-coplanarity. Thereafter, screening against kinase panel revealed their dual inhibitory activity against EGFR and FAK. Quinolines 6f, 6h, 6i, and 20f were the most potent EGFR inhibitors (IC50s = 25.39, 20.15, 22.36, and 24.81 nM, respectively). Meanwhile, quinolines 6f, 6h, 6i, 16d, and 20f exerted the best FAK inhibition (IC50s = 22.68, 14.25, 18.36, 17.36, and 15.36 nM, respectively). Finally, molecular modelling was employed to justify the promising EGFR/FAK inhibition. The study outcomes afforded the first reported quinolines with potent EGFR/FAK dual inhibition., Graphical Abstract
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- 2022
8. Rapid development and implementation of a behaviour change strategy to improve COVID-19 personal protective equipment use in a regional Australian emergency department
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Curtis, Kate, Jansen, Peter, Mains, Margot, O’Hare, Anna, Scotcher, Bradley, Alcorn, David, Nahidi, Shizar, Harris, Joanna, Brouillard, Daniel, Morton, Sarah, and Shaban, Ramon Z.
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Coronavirus ,Implementation ,Emergency ,Australia ,Behaviour change ,COVID-19 ,Humans ,Emergency Nursing ,Emergency Service, Hospital ,Personal Protective Equipment ,Referral and Consultation ,Research Paper - Abstract
OBJECTIVE: To identify barriers to, describe the development of and evaluate the implementation of a behavioural theory informed strategy to improve staff personal protective equipment (PPE) compliance during COVID-19 in a regional Australian Emergency Department. METHODS: Barriers to PPE use were identified through staff consultation then categorised using the Theoretical Domains Framework. The Behaviour Change Wheel was used to develop a strategy to address the barriers to PPE compliance. The strategy was refined and endorsed by the site COVID taskforce. Data were collected through direct observation. Descriptive statistics were used to summarise PPE compliance and inductive content analysis for free text data of staff behaviours. RESULTS: 73 barriers were identified, mapped to 9 intervention functions and 42 behaviour change techniques. The predominant mechanisms were: (1) Executive communication reinforcing policy and consequences; (2) implementation of a PPE Marshal; (3) face to face reinforcement / modeling; (4) environmental restructuring including electronic medical record modifications. The PPE Marshal observed 281 PPE activities. PPE compliance varied between 47.9% (Buddy check) and 91.8% (Bare below elbow). The PPE Marshal intervened on 121 occasions, predominantly through buddying, explaining and demonstrating correct PPE use, most frequently with medical staff (72%). CONCLUSION: We describe an evidence-based process to overcome barriers to PPE compliance that maximize safe work practice in a time critical situation. Staff require enabling, access to equipment and reinforcement to use PPE correctly.
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- 2022
9. A Straightforward Method for Adipocyte Size and Count Analysis Using Open-source Software QuPath
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Ville A Palomäki, Vesa Koivukangas, Sanna Meriläinen, Petri Lehenkari, and Tuomo J Karttunen
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Adipocyte size ,obesity ,Histology ,qupath ,QH573-671 ,Physiology ,Qupath ,adipocyte size ,imagej ,Cell Biology ,Adipocyte Tools ,fat cell size ,RC648-665 ,ImageJ ,Diseases of the endocrine glands. Clinical endocrinology ,Adipose Tissue ,Diabetes Mellitus, Type 2 ,Adipocytes ,Humans ,QP1-981 ,adipocyte tools ,Cytology ,Software ,Research Article ,Research Paper - Abstract
Changes in adipose tissue morphology, depicted by cell morphology alterations such as enlargement of fat cells, always accompany over-weight and obesity. The variables related to cell size have been shown to associate with low-grade inflammation of adipose tissue and common obesity-related comorbidities including metabolic syndrome and type 2 diabetes. Quantifying fat cell morphology from images of histological specimens can be tedious. Here, we present a straightforward method for the task using the free open-source software QuPath with its inbuilt tools only. Measurements of human adipose tissue samples with the described protocol showed an excellent correlation with those obtained with ImageJ software with Adipocyte Tools plugin combined with manual correction of misdetections. Intraclass correlation between the two methods was at good to excellent level. The method described here can be applied to considerably large tissue areas, even whole-slide analysis.
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- 2022
10. Long-term in vivo survival of 3D-bioprinted human lipoaspirate-derived adipose tissue: proteomic signature and cellular content
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Karin Säljö, Peter Apelgren, Linnea Stridh Orrhult, Susann Li, Matteo Amoroso, Paul Gatenholm, and Lars Kölby
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3d bioprinting ,Histology ,QH573-671 ,Physiology ,flow cytometry ,Mice, Nude ,adipose-derived stem cells/ascs ,Cell Biology ,endothelial progenitor cells/epcs ,RC648-665 ,Diseases of the endocrine glands. Clinical endocrinology ,Mice ,proteomics ,Adipose Tissue ,lipoaspirate-derived adipose tissue ,Animals ,Humans ,QP1-981 ,Cytology ,Research Article ,Research Paper ,Endothelial Progenitor Cells ,Secretome - Abstract
Three-dimensional (3D)-bioprinted lipoaspirate-derived adipose tissue (LAT) is a potential alternative to lipo-injection for correcting soft-tissue defects. This study investigated the long-term in vivo survival of 3D-bioprinted LAT and its proteomic signature and cellular composition. We performed proteomic and multicolour flow cytometric analyses on the lipoaspirate and 3D-bioprinted LAT constructs were transplanted into nude mice, followed by explantation after up to 150 days. LAT contained adipose-tissue-derived stem cells (ASCs), pericytes, endothelial progenitor cells (EPCs) and endothelial cells. Proteomic analysis identified 6,067 proteins, including pericyte markers, adipokines, ASC secretome proteins, proangiogenic proteins and proteins involved in adipocyte differentiation and developmental morphogenic signalling, as well as proteins not previously described in human subcutaneous fat. 3D-bioprinted LAT survived for 150 days in vivo with preservation of the construct shape and size. Furthermore, we identified human blood vessels after 30 and 150 days in vivo, indicating angiogenesis from capillaries. These results showed that LAT has a favourable proteomic signature, contains ASCs, EPCs and blood vessels that survive 3D bioprinting and can potentially facilitate angiogenesis and successful autologous fat grafting in soft-tissue reconstruction.
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- 2022
11. Coumarins effectively inhibit bacterial α-carbonic anhydrases
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Simone Giovannuzzi, Chad S. Hewitt, Alessio Nocentini, Clemente Capasso, Daniel P. Flaherty, and Claudiu T. Supuran
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Pharmacology ,coumarins ,Dose-Response Relationship, Drug ,Molecular Structure ,carbonic anhydrase ,Microbial Sensitivity Tests ,General Medicine ,RM1-950 ,Anti-Bacterial Agents ,neisseria gonorrhoeae ,inhibitor ,Structure-Activity Relationship ,Drug Discovery ,Humans ,Therapeutics. Pharmacology ,Carbonic Anhydrase Inhibitors ,Vibrio cholerae ,Research Article ,Research Paper ,Carbonic Anhydrases ,antibacterials - Abstract
Coumarins are known to act as prodrug inhibitors of mammalian α-carbonic anhydrases (CAs, EC 4.2.1.1) but they were not yet investigated for the inhibition of bacterial α-CAs. Here we demonstrate that such enzymes from the bacterial pathogens Neisseria gonorrhoeae (NgCAα) and Vibrio cholerae (VchCAα) are inhibited by a panel of simple coumarins incorporating hydroxyl, amino, ketone or carboxylic acid ester moieties in various positions of the ring system. The nature and the position of the substituents in the coumarin ring were the factors which strongly influenced inhibitory efficacy. NgCAα was inhibited with KIs in the range of 28.6–469.5 µM, whereas VchCAα with KIs in the range of 39.8–438.7 µM. The two human (h)CA isoforms included for comparison reason in the study, hCA I and II, were less prone to inhibition by these compounds, with KIs of 137–948.9 µM for hCA I and of 296.5–961.2 µM for hCA II, respectively. These findings are relevant for discovering coumarin bacterial CA inhibitors with selectivity for the bacterial over human isoform, with potential applications as novel antibacterial agents.
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- 2022
12. Discovery of triterpenoids as potent dual inhibitors of pancreatic lipase and human carboxylesterase 1
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Jing Zhang, Qiu-Sha Pan, Xing-Kai Qian, Xiang-Lu Zhou, Ya-Jie Wang, Rong-Jing He, Le-Tian Wang, Yan-Ran Li, Hong Huo, Cheng-Gong Sun, Lei Sun, Li-Wei Zou, and Ling Yang
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Pharmacology ,Dose-Response Relationship, Drug ,Molecular Structure ,Lipase ,General Medicine ,RM1-950 ,triterpenoids ,human carboxylesterase 1 ,Triterpenes ,adipocyte adipogenesis ,Structure-Activity Relationship ,pancreatic lipase ,Drug Discovery ,Humans ,Therapeutics. Pharmacology ,Enzyme Inhibitors ,Carboxylic Ester Hydrolases ,Pancreas ,dual inhibitors ,Research Article ,Research Paper - Abstract
Pancreatic lipase (PL) is a well-known key target for the prevention and treatment of obesity. Human carboxylesterase 1A (hCES1A) has become an important target for the treatment of hyperlipidaemia. Thus, the discovery of potent dual-target inhibitors based on PL and hCES1A hold great potential for the development of remedies for treating related metabolic diseases. In this study, a series of natural triterpenoids were collected and the inhibitory effects of these triterpenoids on PL and hCES1A were determined using fluorescence-based biochemical assays. It was found that oleanolic acid (OA) and ursolic acid (UA) have the excellent inhibitory effects against PL and hCES1A, and highly selectivity over hCES2A. Subsequently, a number of compounds based on the OA and UA skeletons were synthesised and evaluated. Structure���activity relationship (SAR) analysis of these compounds revealed that the acetyl group at the C-3 site of UA (compound 41) was very essential for both PL and hCES1A inhibition, with IC50 of 0.75 ��M and 0.014 ��M, respectively. In addition, compound 39 with 2-enol and 3-ketal moiety of OA also has strong inhibitory effects against both PL and hCES1A, with IC50 of 2.13 ��M and 0.055 ��M, respectively. Furthermore, compound 39 and 41 exhibited good selectivity over other human serine hydrolases including hCES2A, butyrylcholinesterase (BChE) and dipeptidyl peptidase IV (DPP-IV). Inhibitory kinetics and molecular docking studies demonstrated that both compounds 39 and 41 were effective mixed inhibitors of PL, while competitive inhibitors of hCES1A. Further investigations demonstrated that both compounds 39 and 41 could inhibit adipocyte adipogenesis induced by mouse preadipocytes. Collectively, we found two triterpenoid derivatives with strong inhibitory ability on both PL and hCES1A, which can be served as promising lead compounds for the development of more potent dual-target inhibitors targeting on PL and hCES1A.
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- 2022
13. Polycyclic nitrogen heterocycles as potential thymidine phosphorylase inhibitors: synthesis, biological evaluation, and molecular docking study
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Aknin, Karen, Bontemps, Alexis, Farce, Amaury, Merlet, Eric, Belmont, Philippe, Helissey, Philippe, Chavatte, Philippe, Sari, Marie-Agnès, Giorgi-Renault, Sylviane, and Desbène-Finck, Stéphanie
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Thymidine Phosphorylase ,Dose-Response Relationship, Drug ,Molecular Structure ,Cell Survival ,Nitrogen ,multicomponent reactions ,molecular docking ,RM1-950 ,Cell Line ,pyrimido[4,5-b]quinoline-2,4-dione ,Molecular Docking Simulation ,thymidine phosphorylase inhibitor ,Structure-Activity Relationship ,pyrido[2,3-d]pyrimidinedione ,Heterocyclic Compounds ,Humans ,Polycyclic Compounds ,Therapeutics. Pharmacology ,Enzyme Inhibitors ,Research Article ,Research Paper - Abstract
New polycyclic heterocycles were synthesised and evaluated as potential inhibitors of thymidine phosphorylase (TP). Inspired by the pharmacophoric pyrimidinedione core of the natural substrate, four series have been designed in order to interact with large empty pockets of the active site: pyrimidoquinoline-2,4-diones (series A), pyrimidinedione linked to a pyrroloquinoline-1,3-diones (series B and C), the polycyclic heterocycle has been replaced by a pyrimidopyridopyrrolidinetetraone (series D). In each series, the tricyclic nitrogen heterocyclic moiety has been synthesised by a one-pot multicomponent reaction. Compared to 7-DX used as control, 2d, 2l, 2p (series A), 28a (series D), and the open intermediate 30 showed modest to good activities. A kinetic study confirmed that the most active compounds 2d, 2p are competitive inhibitors. Molecular docking analysis confirmed the interaction of these new compounds at the active binding site of TP and highlighted a plausible specific interaction in a pocket that had not yet been explored.
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- 2022
14. A multidisciplinary, cross-sectional survey of burnout and wellbeing in emergency department staff during COVID-19
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Dixon, Emma, Murphy, Margaret, and Wynne, Rochelle
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Cross-Sectional Studies ,Emergency department ,COVID-19 ,Burnout ,Medicine ,Humans ,Nursing ,Burnout, Psychological ,Emergency Nursing ,Stress ,Emergency Service, Hospital ,Burnout, Professional ,Research Paper - Abstract
Background Emergency department (ED) staff are at-risk of burnout, poor wellbeing and increased stress that can impact patient satisfaction, staff morale and retention. The aim of this survey was to determine level of burnout, stress and satisfaction with current employment role in ED during COVID-19. Methods A multisite cross-sectional survey captured ED employment data, wellbeing, burnout (Maslach Burnout Inventory), stress (Health Professions Stress Inventory), work environment (WES-10) and Caring for COVID-19 Patients questions. Results The response rate of 44.2% (n = 177) represented all healthcare disciplines. Only 58.8% (n = 104) of participants were happy in their role, satisfaction was low, burnout was high (M 71.0, SD 17.1) as was level of stress (M 90.6, SD 16.5). Nurses and allied health staff were more stressed than their medical or support staff colleagues. Participants perceived discriminatory behaviours from friends and family in caring for suspected or infected COVID-19 patients. Conclusions ED staff are a vulnerable group. Programmes to promote wellbeing, personal resilience, and self-care together with personal and professional growth are needed to build individual capability and a culture of organisational resilience, particularly in the context of the COVID pandemic.
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- 2022
15. Primary healthcare physicians’ satisfaction towards work safety and personal protective equipment during the COVID-19 pandemic in Qatar: A cross-sectional study
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Mansoura Ismail, Anwar Joudeh, Ayman Al-Dahshan, Muna Ahmed Nur, Fayrouz Hamed El Aguizy, and Nagah Selim
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Male ,Nursing (miscellaneous) ,Primary Health Care ,SARS-CoV-2 ,Public Health, Environmental and Occupational Health ,Satisfaction ,COVID-19 ,Personal Satisfaction ,Primary care ,Cross-Sectional Studies ,Infectious Diseases ,Physicians ,Work Safety ,Humans ,Female ,Pandemics ,Personal Protective Equipment ,Qatar ,Research Paper - Abstract
Background During COVID-19 pandemic, healthcare workers are experiencing unprecedented pressure from stressors including enormous workload, virus exposure, and inadequate PPE. This study aimed to assess primary healthcare physicians’ satisfaction towards work safety and personal protective equipment and their predictors during early stages of COVID-19 pandemic in Qatar. Methods A cross-sectional web-based survey was conducted in 27 primary healthcare centers in Qatar from 1st June to 30 July 2020. Descriptive and analytical statistics were used when appropriate. A multivariable linear regression analysis was done to identify predictors of satisfaction among participants. Results A total of 262 participants completed the questionnaire with a response rate of 58.2%. 51.9% were males and 68.3% were family physicians. Only 14.9% and 17.2% of respondents were satisfied or highly satisfied about the overall safety of work and the clinical guidelines on the use of PPE in the context of COVID-19 respectively. Participants who were general practitioners were significantly more likely to be satisfied with maintaining work safety and local PPE guidelines compared to family physicians by 2.93 scores (95% CI 1.43, 4,43 p -value
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- 2022
16. DLEU2 modulates proliferation, migration and invasion of platelet-derived growth factor-BB (PDGF-BB)-induced vascular smooth muscle cells (VSMCs) via miR-212-5p/YWHAZ axis
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Zhiying Zhao, Guangming Zhang, Jing Yang, Rui Lu, and Haijuan Hu
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Myocytes, Smooth Muscle ,Becaplermin ,Cell Biology ,Atherosclerosis ,Muscle, Smooth, Vascular ,MicroRNAs ,14-3-3 Proteins ,Cell Movement ,Humans ,RNA, Long Noncoding ,Molecular Biology ,Cells, Cultured ,Developmental Biology ,Cell Proliferation ,Research Paper - Abstract
DLEU2 has been proved to act as an oncogene in a variety of cancers, but its role in cardiovascular diseases is dearth of research. Thus, this study mainly discussed the effect and possible mechanism of DLEU2 on platelet-derived growth factor-BB (PDGF-BB)-triggered vascular smooth muscle cell (VSMC) injury. To obtain authentic results, the expressions of target genes in atherosclerosis serum were determined by reverse transcription quantitative PCR (RT-qPCR) and the protein levels were evaluated by Western blot. PDGF-BB was used to simply simulate the biological characteristics of VSMCs in vitro. The effect of DLEU2 on the biological behavior of PDGF-BB-induced VSMCs was analyzed by gain- and loss-of-function assays. Bioinformatics analysis, dual luciferase reporter assay, and Pearson correlation method were conducted to determine the relationship between target genes. The role of DLEU2/miR-212-5p/ YWHAZ (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta) axis in PDGF-BB-induced VSMCs was verified by rescue experiments. As a result, DLEU2 and YWHAZ were up-regulated, and miR-212-5p was down-regulated in atherosclerosis serum. Overexpressed DLEU2 facilitated the biological behavior of PDGF-BB-induced VSMCs, whilst siDLEU2 did the opposite. Moreover, overexpressed DLEU2 promoted proliferating cell nuclear antigen (PCNA) expression but repressed α-smooth muscle actin (α-SMA) and Calponin expressions, while it also enhanced YWHAZ expression via suppressing miR-212-5p. MiR-212-5p mimic and siYWHAZ reversed the effects of overexpressed DLEU2 on above biological characteristics and protein expressions in PDGF-BB-induced VSMCs, while the regulatory effect of miR-212-5p mimic was partially offset by overexpressed YWHAZ. Collectively, DLEU2 modulates PDGF-BB-induced VSMC injury via miR-212-5p/YWHAZ axis in atherosclerosis.
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- 2023
17. NSUN2-mediated RNA m
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Guangying, Luo, Weiwei, Xu, Xiaoyan, Chen, Siqi, Wang, Jiao, Wang, Feng, Dong, Dan-Ning, Hu, Peter S, Reinach, and Dongsheng, Yan
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Uveal Neoplasms ,Cell Movement ,Cell Line, Tumor ,Humans ,RNA ,Methyltransferases ,DNA Methylation ,Melanoma ,Cell Proliferation ,Research Paper - Abstract
RNA 5-methylcytosine (m(5)C) is a widespread post-transcriptional modification involved in diverse biological processes through controlling RNA metabolism. However, its roles in uveal melanoma (UM) remain unknown. Here, we describe the biological roles and regulatory mechanisms of RNA m(5)C in UM. Initially, we identified significantly elevated global RNA m(5)C levels in both UM cells and tissue specimens using ELISA assay and dot blot analysis. Meanwhile, NOP2/Sun RNA methyltransferase family member 2 (NSUN2) was upregulated in both types of these samples, whereas NSUN2 knockdown significantly decreased RNA m(5)C level. Such declines inhibited UM cell migration and suppressed cell proliferation through cell cycle G1 arrest. Furthermore, bioinformatic analyses, m(5)C-RIP-qPCR, and luciferase assay identified β-Catenin (CTNNB1) as a direct target of NSUN2-mediated m(5)C modification in UM cells. Additionally, overexpression of miR-124a in UM cells diminished NSUN2 expression levels indicating that it is an upstream regulator of this response. Our study suggests that NSUN2-mediated RNA m(5)C methylation provides a potential novel target to improve the therapeutic management of UM pathogenesis.
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- 2023
18. Residential green space in association with the methylation status in a CpG site within the promoter region of the placental serotonin receptor
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Yinthe, Dockx, Esmée, Bijnens, Nelly, Saenen, Raf, Aerts, Jean-Marie, Aerts, Lidia, Casas, Andy, Delcloo, Nicolas, Dendoncker, Catherine, Linard, Michelle, Plusquin, Michiel, Stas, An, Van Nieuwenhuyse, Jos, Van Orshoven, Ben, Somers, and Tim, Nawrot
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Pregnancy ,Maternal Exposure ,Parks, Recreational ,Placenta ,Humans ,Female ,Receptor, Serotonin, 5-HT2A ,DNA Methylation ,Promoter Regions, Genetic ,Epigenesis, Genetic ,Research Paper - Abstract
Green space could influence adult cognition and childhood neurodevelopment , and is hypothesized to be partly driven by epigenetic modifications. However, it remains unknown whether some of these associations are already evident during foetal development. Similar biological signals shape the developmental processes in the foetal brain and placenta.Therefore, we hypothesize that green space can modify epigenetic processes of cognition-related pathways in placental tissue, such as DNA-methylation of the serotonin receptor HTR2A. HTR2A-methylation was determined within 327 placentas from the ENVIRONAGE (ENVIRonmental influence ON early AGEing) birth cohort using bisulphite-PCR-pyrosequencing. Total green space exposure was calculated using high-resolution land cover data derived from the Green Map of Flanders in seven buffers (50 m-3 km) and stratified into low (
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- 2023
19. circFCHO2 promotes gastric cancer progression by activating the JAK1/STAT3 pathway via sponging miR-194-5p
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Zhe Zhang, Chengying Sun, Yan Zheng, and Yanying Gong
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STAT3 Transcription Factor ,Lung Neoplasms ,Membrane Proteins ,Mice, Nude ,Cell Biology ,Janus Kinase 1 ,RNA, Circular ,Deoxyuridine ,Gene Expression Regulation, Neoplastic ,Mice ,MicroRNAs ,Stomach Neoplasms ,Cell Line, Tumor ,Animals ,Eosine Yellowish-(YS) ,Humans ,Hematoxylin ,Molecular Biology ,In Situ Hybridization, Fluorescence ,Developmental Biology ,Cell Proliferation ,Research Paper - Abstract
circFCHO2 has been revealed to be overexpressed in gastric cancer (GC) patients. This article identified the function of circFCHO2 on GC progression. The expression of circFCHO2, miR-194-5p and JAK1 in 30 GC patients and cells was monitored by quantitative reverse transcription-polymerase chain reaction. circFCHO2 localization in GC cells was monitored by RNA fluorescence in situ hybridization. Cell counting kit-8 assay, 5-ethynyl-2-deoxyuridine staining, transwell experiment, tube formation and sphere formation experiments were applied to detect GC cell proliferation, invasion, angiogenesis and cancer stem cell characteristics. Dual-luciferase reporter gene assay, RNA pull down assay and RNA immunoprecipitation experiment were utilized to research the binding between two genes. In vivo tumorigenesis and lung metastasis were studied using nude mice. Immunohistochemistry and hematoxylin–eosin staining were conducted. Protein expression was assessed by Western blot. Serum exosomes of GC patients and healthy participants were isolated. circFCHO2 up-modulation in GC patients was related to poor outcome. circFCHO2 was located in the cytoplasm of GC cells. circFCHO2 silencing weakened the proliferation, invasion, angiogenesis and stem cell characteristics of GC cells. miR-194-5p knockdown counteracted this effect. circFCHO2 activated the JAK1/STAT3 pathway by sponging miR-194-5p. miR-194-5p overexpression attenuated the malignant phenotypes of GC cells. JAK1 overexpression abrogated this effect. circFCHO2 silencing weakened GC cells growth and lung metastasis in vivo. circFCHO2 was up-modulated in serum exosomes of GC patients. circFCHO2 was an oncogene in GC by activating the JAK1/STAT3 pathway via sponging miR-194-5p. circFCHO2 might be a novel target and diagnostic marker for GC.
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- 2023
20. Association between
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Xinglv, Hu, Dingjun, Hao, Jichao, Yin, Futai, Gong, Xiangyang, Wang, Ruoxi, Wang, and Bo, Liu
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Male ,China ,Lumbar Vertebrae ,Genotype ,Polymorphism, Single Nucleotide ,Gene Frequency ,Risk Factors ,Case-Control Studies ,Humans ,Female ,Genetic Predisposition to Disease ,RNA, Long Noncoding ,Intervertebral Disc Displacement ,Research Paper - Abstract
Lumbar disc herniation (LDH) is a common spinal disease that endangers human health. Genetic factors play a vital role in the progression of LDH. This study aimed to explore the relationship of the MIR31HG polymorphism with LDH risk in the Chinese population. Seven candidate SNPs on MIR31HG in 504 patients with LDH and 503 healthy people were genotyped by Agena MassARRAY platform. Logistic regression was used to calculate the relationship between MIR31HG polymorphism and LDH risk under different genetic models. Multi-factor dimensionality reduction (MDR) analysis was performed to evaluate the SNP–SNP interaction. We found that rs10965059 was significantly associated with a decreased risk of LDH under the dominant (OR = 0.46, 95% CI: 0.34–0.62, P 0.96, suggesting a significant linkage disequilibrium presence among each pair SNPs. MDR analysis showed that the best single-locus and multi-locus models for the prediction of LDH risk were rs10965059 and seven-locus models, respectively, and both of them increased LDH risk. Our results shown that in the Chinese Han population, the MIR31HG polymorphism rs10965059 was involved in a risk to symptomatic LDH, which provides a scientific basis for early screening, prevention, diagnosis and treatment of local LDH high-risk populations.
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- 2023
21. Knockdown of NUSAP1 inhibits cell proliferation and invasion through downregulation of TOP2A in human glioblastoma
- Author
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Jian Wang, Zichao Feng, Zhaoyang Zhong, Qichao Qi, Wenjie Li, Jiwei Wang, Ning Yang, Qing Zhang, Bin Huang, Chen Qiu, Xiaofei Liu, Yaotian Hu, Anjing Chen, Wenxing Jin, Wenjing Zhou, and Zhiyi Xue
- Subjects
Down-Regulation ,Biology ,Mice ,Downregulation and upregulation ,Cell Line, Tumor ,medicine ,Animals ,Humans ,RNA, Small Interfering ,Poly-ADP-Ribose Binding Proteins ,Molecular Biology ,Cell Proliferation ,Gene knockdown ,Cell growth ,Brain Neoplasms ,Cell Biology ,Glioma ,medicine.disease ,Gene Expression Regulation, Neoplastic ,DNA Topoisomerases, Type II ,Cancer research ,Glioblastoma ,Microtubule-Associated Proteins ,Developmental Biology ,Research Paper - Abstract
Background: Nucleolar and spindle associated protein 1 (NUSAP1) is an indispensable mitotic regulator, which has been reported to be involved in the development, progression, and metastasis of several types of cancer. Here, we investigated the expression and biological function of NUSAP1 in human glioblastoma multiforme (GBM). Methods: The expression of NUSAP1 on GBM tissues and cells were determined by database analysis, immunohistochemistry and Western blot. EdU assay, transwell assay and flow cytometric analysis were performed to evaluate the effect of NUSAP1 knockdown on GBM cell proliferation, cell invasion and cell apoptosis. RNA sequencing was used to screen for downstream molecules altered in GBM cells after NUSAP1 depletion. An intracranial mice model and bioluminescent imaging were used to assess the effect of NUSAP1 on tumor growth and survival time in vivo. Results: Analysis of the molecular data in CGGA, TCGA and Rembrandt datasets demonstrated that NUSAP1 was significantly up-regulated in GBM relative to low grade gliomas and non-neoplastic brain tissue samples. Kaplan-Meier analysis indicated that patients with tumors showing high NUSAP1 expression exhibited significantly poorer survival in both CGGA (P = 0.002) and Rembrandt cohorts (P = 0.017). Analysis of RNA sequencing data from P3-cells with stable knockdown of NUSAP1 revealed topoisomerase 2A (TOP2A) as a possible molecule down-regulated by the loss of NUSAP1. SiRNA knockdown of either NUSAP1 or TOP2A in U251, T98 and GBM derived patient P3 cells inhibited GBM cell proliferation and invasion, and induced cell apoptosis. Finally, stable knockdown of NUSAP1 with shRNA led to decreased tumor growth in an orthotopic xenograft model of GBM in mice. Conclusions: Taken together, NUSAP1 gene silencing induced apoptosis possibly through the down-regulation of the candidate downstream molecule TOP2A. Interference with the expression of NUSAP1 might therefore inhibit malignant progression in GBM, and NUSAP1 might thus serve as a promising molecular target for GBM treatment.
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- 2023
22. Low-dose aspirin inhibits trophoblast cell apoptosis by activating the CREB/Bcl-2 pathway in pre-eclampsia
- Author
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Kai-Min, Guo, Wei, Li, Zhao-Hua, Wang, Lang-Chi, He, Yan, Feng, and Hui-Shu, Liu
- Subjects
Aspirin ,Caspase 3 ,Placenta ,Cytochromes c ,Apoptosis ,Hydrogen Peroxide ,Cell Biology ,Caspase 9 ,Sincalide ,Phosphates ,Rats ,Trophoblasts ,Pre-Eclampsia ,Cell Movement ,Pregnancy ,Animals ,Humans ,Female ,Cyclic AMP Response Element-Binding Protein ,Reactive Oxygen Species ,Molecular Biology ,bcl-2-Associated X Protein ,Research Paper ,Developmental Biology - Abstract
Excessive apoptosis of placental trophoblast cells is considered a major cause of pre-eclampsia (PE) pathogenesis. Phosphorylation of the widely expressed cAMP response element binding protein (CREB) regulates apoptosis and may be involved in PE incidence. Low-dose aspirin (LDA) is an effective approach for preventing PE with unclear mechanisms. Thus we examined whether LDA protects against PE by inhibiting trophoblast cell apoptosis through CREB. The effects of LDA on human PE placenta, PE model rat placenta, and hydrogen peroxide (H(2)O(2))-induced HTR-8/SVneo cell apoptosis were analyzed. TUNEL assay, immunohistochemistry, Cell Counting Assay Kit-8 (CCK-8) assay, western blot, and flow cytometry assay were performed. In the placenta of human PE and rat PE models, the TUNEL index increased and was partially corrected with LDA pre-treatment. Meanwhile, decreased Bcl-2 and increased Bax expression were significantly reversed by LDA pre-treatment. In HTR-8/SVneo cells, H(2)O(2) decreased cell viability, promoted apoptosis, reduced the Bcl-2/Bax ratio, aggravated loss of mitochondrial membrane potential (MMP), increased cytoplasmic cytochrome c release, and simultaneously activated caspase-9 and caspase-3. These effects were effectively restored by LDA pre-treatment in the cells. Moreover, LDA promoted CREB phosphorylation in trophoblast cells. CREB interference further promoted apoptosis, reduced the Bcl-2/Bax ratio, and increased MMP loss. CREB interference also reversed the inhibitory effect of LDA on H(2)O(2)-induced apoptosis in HTR-8/SVneo cells. Thus, LDA was shown to inhibit trophoblast cell mitochondrial apoptosis by activating the CREB/Bcl-2 pathway, providing novel evidence for the protective mechanism of LDA in PE. Abbreviations; PE: Pre-eclampsia; LDA: low-dose aspirin; CREB: cAMP response element binding protein; ROS: reactive oxygen species; H(2)O(2): hydrogen peroxide; PBS: Phosphate-buffered saline; Bcl-2: B-cell lymphoma-2; MMP: Mitochondrial membrane potential; Cyt-c: CytochromeC.
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- 2022
23. Development and validation of a tool to appraise guidelines on SARS-CoV-2 infection control strategies in healthcare workers
- Author
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Mallikarjuna Ponnapa Reddy, Umesh Kadam, Francesca Rubulotta, Shailesh Bihari, Zheng Lim, Alexander Zubarev, Ashwin Subramaniam, Kollengode Ramanathan, Chris Anstey, Erik Svensk, Jinghang Luo, Jumana Haji, Arvind Rajamani, Saikat Mitra, and Kiran Shekar
- Subjects
Infectious Disease Transmission, Patient-to-Professional ,Health Personnel ,guideline appraisal tool ,education ,Infection control guidelines ,Delphi method ,Emergency Nursing ,Critical Care Nursing ,1117 Public Health and Health Services ,Health care ,Pandemic ,Humans ,Medicine ,Infection control ,Pandemics ,Personal protective equipment ,11 Medical and Health Sciences ,computer.programming_language ,Infection Control ,PPE guidelines ,healthcare workers ,SARS-CoV-2 ,business.industry ,pandemic ,COVID-19 ,Guideline ,medicine.disease ,Coronavirus ,Gross national income ,Medical emergency ,business ,computer ,Delphi ,Research Paper - Abstract
Background Clinical guidelines on infection control strategies in healthcare workers (HCWs) play an important role in protecting them during the severe acute respiratory syndrome coronavirus 2 pandemic. Poorly constructed guidelines that are incomprehensive and/or ambiguous may compromise HCWs’ safety. Objective The objective of this study was to develop and validate a tool to appraise guidelines on infection control strategies in HCWs based on the guidelines published early in the coronavirus disease 2019 pandemic. Design, setting, and outcomes A three-stage, web-based, Delphi consensus-building process among a panel of diverse HCWs and healthcare managers was performed. The tool was validated by appraising 40 international, specialty-specific, and procedure-specific guidelines along with national guidelines from countries with a wide range of gross national income. Results Overall consensus (≥75%) was reached at the end of three rounds for all six domains included in the tool. The Delphi panel recommended an ideal infection control guideline should encompass six domains: general characteristics (domain 1), engineering recommendations (domain 2), personal protective equipment (PPE) use (domain 3), and administrative aspects (domain 4-6) of infection control. The appraisal tool performed well across the six domains, and the inter-rater agreement was excellent for the 40 guidelines. All included guidelines performed relatively better in domains 1–3 than in domains 4–6, and this was more evident in guidelines originating from lower income countries. Conclusion The guideline appraisal tool was robust and easy to use. Engineering recommendations aspects of infection control, administrative measures that promote optimal PPE use, and HCW wellbeing were generally lacking in assessed guidelines. This tool may enable health systems to adopt high-quality HCW infection control guidelines during the severe acute respiratory syndrome coronavirus 2 pandemic and may also provide a framework for future guideline development.
- Published
- 2022
24. Inspection Reports: The Canary in the Coal Mine
- Author
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Mary Crea-Arsenio, Andrea Baumann, and Victoria Smith
- Subjects
Ontario ,Social Responsibility ,Coal ,Humans ,Family ,General Medicine ,Long-Term Care ,Research Paper ,Nursing Homes - Abstract
Neglect in the Ontario long-term care (LTC) sector is defined under section 5 of O. Reg. 79/10 of the Long-Term Care Homes Act, 2007. Allegations are monitored and investigated via inspections. Using an exploratory descriptive design, we analyzed reports of neglect in LTC homes from 2019 to 2020. The majority were in response to critical incidents, followed by complaints from family members or staff. Thematic analysis revealed four areas of neglect: (1) failure to provide treatment; (2) failure to provide care; (3) failure to attend to or assist residents; and (4) failure to investigate allegations. Study findings demonstrate that an accountability framework that includes consequences for institutions is needed.
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- 2022
25. Perspectives from the Netherlands: Responses from, Strategies of and Challenges for Long-Term Care Health Personnel
- Author
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Agnes Meershoek, Laura Broek, Mary Crea-Arsenio, RS: CAPHRI - R4 - Health Inequities and Societal Participation, and Metamedica
- Subjects
Health Personnel ,COVID-19 ,Humans ,General Medicine ,Long-Term Care ,COVID-19/epidemiology ,Research Paper ,Netherlands ,Nursing Homes - Abstract
The outbreak of the COVID-19 crisis severely afflicted the Dutch long-term care sector. To protect vulnerable residents of nursing homes the government took several measures, of which the complete nationwide visitors' ban was the most restrictive. These measures had not only a large impact on residents but they also greatly impacted nursing home personnel. Based on a descriptive review and a few interviews, this paper discusses the measures taken in the Dutch long-term care sector and the challenges healthcare personnel encountered in terms of workload and well-being. It further explores the strategies that were implemented to support personnel to cope with these challenges.
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- 2022
26. Frequency of Neglect and Its Effect on Mortality in Long-Term Care before and during the COVID-19 Pandemic
- Author
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Noori Akhtar-Danesh, Andrea Baumann, Mary Crea-Arsenio, and Valentina Antonipillai
- Subjects
Adult ,Pressure Ulcer ,Dehydration ,COVID-19 ,Humans ,General Medicine ,Long-Term Care ,Pandemics ,Research Paper ,Nursing Homes ,Retrospective Studies - Abstract
Neglect of vulnerable adults living in long-term care (LTC) homes has been well documented. It often presents first in the physical symptoms of decubitus ulcers, dehydration and urinary tract infections (UTIs). A retrospective cohort study was conducted to examine the relationship between neglect and 90-day mortality among LTC residents in Ontario. An index of neglect was created. Of 106,765 residents, more than one-quarter were found to have at least one indicator of neglect: 13.1% had decubitus ulcers, 13.5% had dehydration, 6.2% had a UTI. Residents who exhibited clinical signs of neglect had higher risks of death within 90 days, both before and during the COVID-19 pandemic.
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- 2022
27. Exemplars in Long-Term Care during COVID-19: The Importance of Leadership
- Author
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Andrea Baumann, Mary Crea-Arsenio, Mélanie Lavoie-Tremblay, Agnes Meershoek, Pat Norman, Raisa Deber, Metamedica, and RS: CAPHRI - R4 - Health Inequities and Societal Participation
- Subjects
Ontario ,Leadership ,COVID-19 ,Humans ,Ontario/epidemiology ,General Medicine ,Long-Term Care ,Pandemics ,COVID-19/epidemiology ,Research Paper ,Nursing Homes - Abstract
Early in the pandemic, many long-term care (LTC) homes struggled to manage resources and care for vulnerable residents. Using an appreciative inquiry approach, we analyzed exemplar homes in Ontario that remained free of COVID-19 in wave one and interviewed executive directors, directors of care and staff. Findings demonstrate the importance of leadership styles; clear, consistent communication; focusing on staff and resident safety; using a team-based approach; and adapting staff roles to meet care needs. The exemplar homes showed what works in practice. The decisions and approaches that they implemented could be used to develop standards to improve LTC and strengthen the sector.
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- 2022
28. What is Old is New Again: Global Issues Influencing Workers and Their Work in Long-Term Care
- Author
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Berta, Whitney B., Stewart, Cal, and Baumann, Andrea
- Subjects
Humans ,General Medicine ,Workplace ,Long-Term Care ,Research Paper - Abstract
We offer a broad understanding of contemporary issues relevant to the long-term care (LTC) sector and its workers, globally, and the concurrent evolution and involution of these workers' roles, their work and policy environments. While contemporary, most issues are also longstanding and fall into two broad categories: issues relating to the work environments in LTC, including resource availability and worker support, and issues relating to the changing nature of LTC work. We identify five key challenges that relate to the system structures of the LTC sector.
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- 2022
29. COVID-19 Issues in Long-Term Care in Ontario: A Document Analysis
- Author
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David Oldenburger, Andrea Baumann, Mary Crea-Arsenio, Raisa Deber, and Vishwanath Baba
- Subjects
Ontario ,Leadership ,COVID-19 ,Humans ,General Medicine ,Long-Term Care ,Research Paper - Abstract
The COVID-19 crisis in long-term care in Canada has been characterized as a crisis upon a crisis. This study examines recent documents on the crisis in long-term care in Ontario, using document and thematic analysis to synthesize issues and recommendations from the perspectives of different groups and organizations. Thirty-three documents from 20 organizations were analysed and six thematic areas were identified: resident care; human resources; governance, leadership and management; financing; physical infrastructure and supplies; and training and preparation. The six common themes, as perceived by different perspectives, can inform policy makers on long-term care issues.
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- 2022
30. MiR-4268 suppresses gastric cancer genesis through inhibiting keratin 80
- Author
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Zhang, Fan, Wang, Guoxian, Yan, Wenjuan, and Jiang, Hongmei
- Subjects
Keratins, Type II ,Cell Biology ,Gene Expression Regulation, Neoplastic ,MicroRNAs ,Phosphatidylinositol 3-Kinases ,Cell Movement ,Stomach Neoplasms ,Cell Line, Tumor ,Humans ,Keratins ,Molecular Biology ,Research Paper ,Cell Proliferation ,Developmental Biology - Abstract
Gastric cancer (GC) affects a large proportion of cancer patients worldwide, and the prediction of potential biomarkers can greatly improve its diagnosis and treatment. Here, miR-4268 and keratin 80 (KRT80) expression in GC tissues and cell lines was determined. The effect of downregulating miR-4268 and interfering with KRT80 expression on the viability, proliferation, apoptosis, and migration of GC cells were evaluated. The interaction between miR-4268 and KRT80 was studied using luciferase reporter and RNA pull-down assays. The western blot, CCK-8, BrdU, caspase-3 activity, Transwell assays were performed for the functional characterization. In GC tissues and cells, KRT80 expression was found to be significantly higher, while that of miR-4268 was significantly lower than the respective expressions in normal tissues and cells. Interference with KRT80 expression inhibited the viability, proliferation, and migration of GC cells and facilitated cell apoptosisiin vitro/i. We further demonstrated that miR-4268 targeted KRT80 and negatively regulated its expression, and miR-4268 inhibitor alleviated the inhibitory effects of KRT80 downregulation on GC cell growth. Finally, miR-4268 may function as tumor suppressor through inhibiting PI3K/AKT/JNK pathways by targeting KRT80 in GC. Collectively, our present results indicate that the miR-4268/KRT80 axis acts as a potential therapeutic target for patients with GC.bAbbreviations:/bGastric cancer (GC); MicroRNAs (miRNAs); Keratin 80 (KRT80); differentially expressed genes (DEGs); chemoradiotherapy (CRT); negative nonsense sequence (NC); radioimmunoprecipitation assay (RIPA); polyvinylidene fluoride (PVDF).
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- 2022
31. Bit1 is involved in regulation between integrin and TGFβ signaling in lens epithelial cells
- Author
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Ma, Bo, Ni, Ni, Shao, Wanyu, Xu, Jingying, Ji, Jiali, and Luo, Min
- Subjects
Integrins ,Epithelial-Mesenchymal Transition ,Cell Movement ,Transforming Growth Factor beta ,Humans ,Epithelial Cells ,Cell Biology ,RNA, Small Interfering ,Molecular Biology ,Sincalide ,Cell Proliferation ,Research Paper ,Developmental Biology - Abstract
Bit1, as an integrin-specific effector, is specifically expressed in lens epithelial cells (LECs) and may be essential to maintain the normal function of LECs. The present study investigated the function of Bit1 and its regulatory mechanism in LECs. Knockdown of Bit1 was mediated by a lentivirus with a specific short-hairpin RNA against Bit1 in SRA01/04 cells. Cell proliferation ability was measured by CCK-8 assay. Cell migration was examined by transwell and wound-healing assays. The effect of Bit1 knockdown on genome-wide expression patterns was studied via a GeneChip® PrimeView™ Human Gene Expression Array. Based on the ingenuity pathway analysis (IPA), Bit1ʹs regulation of target pathways and genes was verified by real-time qPCR and Western blotting. Bit1 knockdown inhibited proliferation, migration, and regulated cell cycle and apoptosis of LECs. Microarray gene expression analysis and IPA assays revealed that integrin and TGFβ signaling pathways were remarkably impacted by Bit1 expression. FAK, PAK2, ITGA5, and ITGB1 were identified as core node molecules under the control of Bit1. Bit1 participates in integrin and TGFβ signaling via regulating downstream FAK and PAK2 and subsequently affecting EMT-related gene expression including ITGA5, ITGB1, and αSMA. In conclusion, Bit1 plays as an important role in the regulation between integrin and TGFβ signaling, which affects cell survival, migration, and EMT of LECs.
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- 2022
32. Does genetic predisposition modify the effect of lifestyle-related factors on DNA methylation?
- Author
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Chenglong Yu, Allison M Hodge, Ee Ming Wong, Jihoon E Joo, Enes Makalic, Daniel F Schmidt, Daniel D Buchanan, Gianluca Severi, John L Hopper, Dallas R English, Graham G Giles, Roger L Milne, Melissa C Southey, and Pierre-Antoine Dugué
- Subjects
Cancer Research ,Alcohol Drinking ,Smoking ,Humans ,Genetic Predisposition to Disease ,DNA Methylation ,Molecular Biology ,Body Mass Index ,Epigenesis, Genetic ,Research Paper - Abstract
Lifestyle-related phenotypes have been shown to be heritable and associated with DNA methylation. We aimed to investigate whether genetic predisposition to tobacco smoking, alcohol consumption, and higher body mass index (BMI) moderates the effect of these phenotypes on blood DNA methylation. We calculated polygenic scores (PGS) to quantify genetic predisposition to these phenotypes using training (N = 7,431) and validation (N = 4,307) samples. Using paired genetic-methylation data (N = 4,307), gene–environment interactions (i.e., PGS × lifestyle) were assessed using linear mixed-effects models with outcomes: 1) methylation at sites found to be strongly associated with smoking (1,061 CpGs), alcohol consumption (459 CpGs), and BMI (85 CpGs) and 2) two epigenetic ageing measures, PhenoAge and GrimAge. In the validation sample, PGS explained ~1.4% (P = 1 × 10(−14)), ~0.6% (P = 2 × 10(−7)), and ~8.7% (P = 7 × 10(−87)) of variance in smoking initiation, alcohol consumption, and BMI, respectively. Nominally significant interaction effects (P
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- 2022
33. Celastrol inhibits pathologic neovascularization in oxygen-induced retinopathy by targeting the miR-17-5p/HIF-1α/VEGF pathway
- Author
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Kun Zhao, Yaping Jiang, Jing Zhang, Jing Shi, Pengxiang Zheng, Chuanxi Yang, and Yihui Chen
- Subjects
Inflammation ,Vascular Endothelial Growth Factor A ,Neovascularization, Pathologic ,Infant, Newborn ,Endothelial Cells ,Cell Biology ,Retinal Neovascularization ,Hypoxia-Inducible Factor 1, alpha Subunit ,Mice, Inbred C57BL ,Disease Models, Animal ,Mice ,MicroRNAs ,Animals ,Humans ,Retinopathy of Prematurity ,Pentacyclic Triterpenes ,Molecular Biology ,Research Paper ,Developmental Biology - Abstract
Retinopathy of prematurity (ROP), which is characterized by retinal neovascularization (RNV), is a major cause of neonatal blindness. The primary treatment for ROP is anti-vascular endothelial growth factor (VEGF) therapy, which is costly and can rapidly lead to desensitization. Celastrol, a bioactive compound extracted fromiTripterygium wilfordii/iHook F. ("Thunder of God Vine"), has been shown to exert anticancer and anti-inflammatory effects. However, whether celastrol has antiangiogenic activity and can suppress inflammation to inhibit ROP progression is unclear. This was investigated in the present study in vitro as well as in vivo using a mouse model of oxygen-induced retinopathy (OIR). Our results showed that celastrol treatment reduced neovascular and avascular areas in the retina and inhibited microglia activation and inflammation in OIR mice. Celastrol also inhibited proliferation, migration, and tube formation in cultured human retinal microvascular endothelial cells, and reversed the activation of the microRNA (miR)-17-5p/hypoxia-inducible factor (HIF)-1α/VEGF pathway in the retina of OIR mice. These results indicate that celastrol alleviates pathologic RNV in the retina by protecting neuroglia and suppressing inflammation via inhibition of miR-17-5p/HIF-1α/VEGF signaling, and thus has therapeutic potential for the prevention and treatment of ROP.bAbbreviations:/bBSA, bovine serum albumin; COX2, cyclooxygenase 2; ECM, endothelial cell medium; FBS, fetal bovine serum; HDAC, histone deacetylase; HIF-1, hypoxia-inducible factor 1; HRMEC, human retinal microvascular endothelial cell; Hsp70, heat shock protein; IB4, isolectin B4; ICAM-1, intercellular adhesion molecule 1; IL-1β/6, interleukin 1 beta/6; MAPK, mitogen-activated protein kinase; MCP-1, monocyte chemoattractant protein 1; miRNA, microRNA; MMP, matrix metalloproteinase; mTOR, mammalian target of rapamycin; NF-κB, nuclear factor-kappa B; OIR, oxygen-induced retinopathy; PBS, phosphate-buffered saline; PCNA, proliferating cell nuclear antigen; PI3K, phosphatidylinositol-3-kinase; qRT-PCR, quantitative real-time PCR; RNV, retinal neovascularization; ROP, retinopathy of prematurity; RTCA, real-time cell analyzer; RVO, retinal vaso-obliteration; TNF-α, tumor necrosis factor alpha; VCAM-1, vascular cell adhesion molecule 1; VEGF, vascular endothelial growth factor.
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- 2022
34. SAMHD1, positively regulated by KLF4, suppresses the proliferation of gastric cancer cells through MAPK p38 signaling pathway
- Author
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Zhangming Chen, Zhe Jiang, Lei Meng, Ye Wang, Minggui Lin, Zhijian Wei, Wenxiu Han, Songcheng Ying, and Aman Xu
- Subjects
Gene Expression Regulation, Neoplastic ,SAM Domain and HD Domain-Containing Protein 1 ,Kruppel-Like Factor 4 ,Cell Movement ,Stomach Neoplasms ,Cell Line, Tumor ,Humans ,Cell Biology ,Molecular Biology ,Cell Proliferation ,Signal Transduction ,Research Paper ,Developmental Biology - Abstract
SAMHD1 was reported to be related with the development of tumors, while its function in gastric cancer (GC) has not been elucidated yet. Here, we investigated the role and mechanism of SAMHD1 in regulating the proliferation of GC, as well as the mechanism of its expression regulation. Our results revealed that SAMHD1 was downregulated in GC tissues and cell lines, which was correlated with tumor size, depth of invasion and TNM stage. Overexpression of SAMHD1 inhibited the proliferation, clone formation, DNA synthesis and cell cycle progression, while knockdown of SAMHD1 promoted the proliferation of GC cells in vitro and vivo. Meanwhile, SAMHD1 inhibited the activation of MAPK p38 signaling pathway. Moreover, SB203580, as a MAPK p38 inhibitor, could reverse the proliferation and activation of MAPK p38 signaling pathway caused by knockdown of SAMHD1 in GC cells. Additionally, transcription factor Krüppel-like factor 4 (KLF4) bound to the core promoter of SAMHD1, increasing its transcriptional expression in GC cells. In conclusion, SAMHD1 suppressed the proliferation of GC through negatively regulating the activation of MAPK p38 signaling pathway and was upregulated by KLF4 in GC cells.
- Published
- 2022
35. Effect of COVID-19 on management of patients with low back pain in the emergency department
- Author
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Caitlin Jones, Sweekriti Sharma, Gustavo C Machado, Adrian C Traeger, Christina Abdel Shaheed, and Christopher G. Maher
- Subjects
2019-20 coronavirus outbreak ,medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,Opioid ,Emergency Nursing ,Ambulance ,Retrospective analysis ,Humans ,Medicine ,Low back pain ,Pandemics ,Retrospective Studies ,Emergency department ,business.industry ,Electronic medical record ,COVID-19 ,Analgesics, Opioid ,Coronavirus ,Relative risk ,Emergency medicine ,Diagnostic imaging ,medicine.symptom ,Emergency Service, Hospital ,business ,Research Paper ,Healthcare system - Abstract
Background Patients presenting to Emergency Department (ED) with non-specific low back pain can receive more unnecessary, intensive and costly care than is recommended. The COVID-19 pandemic has provided an unprecedented opportunity to examine how health systems prioritise necessary care that provides clear benefits to patients. The purpose of this study was to examine the impact of COVID-19 on care of low back pain in the ED. Methods We performed a retrospective analysis of electronic medical record data on care for low back pain from three public hospitals in Sydney. We included patients diagnosed with spinal conditions who presented between March and May in 2019 and in 2020. Outcomes were the total number of patients presenting with spinal conditions to ED, the proportion diagnosed with non-specific low back pain, and the proportion receiving potentially unnecessary aspects of care (ambulance use, imaging, opioids, hospital admissions). We calculated relative risk with 95% CIs and examined plots with locally weighted smoothed curves. Results Presentations for spinal conditions over a three-month period to three EDs reduced from 694 in 2019 to 475 in 2020 (31% reduction, 95% CI = 26%–37%). The proportion of patients diagnosed with non-specific low back pain (83% in 2019 vs 86% in 2020), or receiving potentially unnecessary care were similar in 2019 and 2020 (Imaging = 25% vs 25%; Opioids = 54% vs 56%; Admitted = 18% vs 20%; pathology test = 24% vs 23%). The proportion of patients arriving by ambulance was higher during the pandemic; 29% in 2019 vs 41% in 2020 (RR = 1.39, 95% CI = 1.19–1.63). Conclusions ED presentations for low back pain associated with spinal conditions decreased substantially during the COVID-19 pandemic. Use of potentially unnecessary aspects of care did not change or increased during the pandemic.
- Published
- 2022
36. miR-29a-3p mitigates the development of osteosarcoma through modulating IGF1 mediated PI3k/Akt/FOXO3 pathway by activating autophagy
- Author
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Qi, Song, Xu, Li, Han, Yongyuan, Chen, Hongkun, and Cheng, Anyuan
- Subjects
Osteosarcoma ,Adolescent ,Forkhead Box Protein O3 ,Bone Neoplasms ,Cell Biology ,Gene Expression Regulation, Neoplastic ,MicroRNAs ,Phosphatidylinositol 3-Kinases ,Cell Movement ,Cell Line, Tumor ,Autophagy ,Humans ,Insulin-Like Growth Factor I ,Child ,Proto-Oncogene Proteins c-akt ,Molecular Biology ,Research Paper ,Cell Proliferation ,Developmental Biology - Abstract
Osteosarcoma (OS), occurring in mesenchymal tissues and with a high degree of malignancy, is most common in children and adolescents. At present, we intend to figure out the expression and functions of miR-29a-3p in OS development. Reverse transcription-polymerase chain reaction (RT-PCR) was adopted to monitor the expression of miR-29a-3p and IGF1 in OS tissues and adjacent non-tumor tissues. Then, the 3- (4,5)-dimethylthiahiazo (-z-y1)-3,5-di- phenytetrazoliumromide (MTT) assay, colony formation experiment, western blot and Transwell assay were conducted to validate OS cell proliferation, colony formation ability, apoptosis, migration and invasion. Next, the association between miR-29a-3p and IGF1 was corroborated by the dual-luciferase reporter assay and the Pearson correlation analysis. Finally, WB was implemented to test the levels of autophagy-related proteins LC3-I/LC3-II, Beclin-1, p62, and the IGF-1 R/PI3k/Akt/FOXO3 axis in OS cells. As a result, miR-29a-3p was down-regulated in OS tissues (versus adjacent non-tumor tissues) and OS cell lines. Overexpressing miR-29a-3p aggravated apoptosis, dampened cell proliferation, colony formation, migration and invasion, and promoted autophagy of OS cells. IGF1 was identified as a target of miR-29a-3p. IGF1 induced oncogenic effects in OS by activating IGF-1 R/ PI3k/Akt pathway, and it dampened the tumor-suppressive effect of miR-29a-3p on OS. Taken together, miR-29a-3p repressed the OS evolvement through inducing autophagy and inhibiting IGF1 mediated PI3k/Akt/FOXO3 pathway.
- Published
- 2022
37. Cyclophilin a represses reactive oxygen species generation and death of hypoxic non-small-cell lung cancer cells by degrading thioredoxin-interacting protein
- Author
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Yang, Li and Lan, Yang
- Subjects
Lung Neoplasms ,Carcinoma ,Cell Biology ,Hypoxia-Inducible Factor 1, alpha Subunit ,Cell Hypoxia ,Thioredoxins ,Carcinoma, Non-Small-Cell Lung ,Cell Line, Tumor ,Tumor Microenvironment ,Humans ,Hypoxia ,Reactive Oxygen Species ,Cyclophilin A ,Molecular Biology ,Research Paper ,Developmental Biology - Abstract
Cyclophilin A (cypA) is overexpressed in many types of carcinomas, including non-small-cell lung cancer (NSCLC). However, the effect of anoxia, a critical feature of the carcinoma cell microenvironment, on cypA expression in NSCLC is unknown. Here, formaldehyde-fixed and paraffin-embedded samples were collected from 60 subjects with NSCLC. The protein expression levels of cypA and hypoxia-inducible factor-1α (HIF-1α) were evaluated using immunohistochemistry. Kaplan-Meier analysis showed that subjects with high cypA expression had remarkably shorter progression-free survival than those with low cypA expression. Furthermore, cypA expression levels were significantly related to HIF-1α expression levels (Spearman's correlation = 0.34, Plt; 0.0001). To further assess the effect of cypA, an anoxic carcinoma cell model was established. CypA expression was remarkably upregulated in H1299 and A549 cell lines under hypoxic conditions. Overexpression of cypA restored hypoxia-impaired cell growth and prevented reactive oxygen species (ROS) production and cell death in hypoxic A549 and H1299 cells. However, these phenotypes were not altered by the inactive R55A mutant of cypA. Mechanistic studies demonstrated that cypA can bind to and degrade the tumor suppressor protein TXNIP in H1299 and A549 cells. Restored TXNIP expression in cypA-overexpressed and hypoxic NSCLC cells led to increased ROS levels and apoptotic cell numbers and decreased cell growth compared with cypA-overexpressed and hypoxic NSCLC cells. These findings indicate that anoxia results in an increase in cypA expression in NSCLC. Additionally, cypA served as an oncogene during hypoxia by interacting with TXNIP.
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- 2022
38. MiR-200b-3p is upregulated in the placental tissues from patients with preeclampsia and promotes the development of preeclampsia via targeting profilin 2
- Author
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Huijun, Liu and Xietong, Wang
- Subjects
MicroRNAs ,Profilins ,Pre-Eclampsia ,Pregnancy ,Placenta ,Humans ,Female ,Cell Biology ,Molecular Biology ,Cell Proliferation ,Trophoblasts ,Research Paper ,Developmental Biology - Abstract
Preeclampsia is a serious pregnancy disorder affecting both maternal and fetal health. However, the pathogenesis of preeclampsia has not been fully understood. This study aimed to investigate the key microRNAs (miRNAs) in the development of preeclampsia. A high-throughput miRNA sequencing analysis for the placental tissues from patients with preeclampsia and healthy controls was conducted, followed by investigation of differentially expressed miRNAs (DEMs) and functional enrichment analysis. Moreover, the expression of a key DEM, named miR-200b-3p, in the preeclampsia patients was validated, and the effects of miR-200b-3p overexpression on the proliferation, migration, and apoptosis of HTR8 trophoblast cells were investigatediin vitro/i. Furthermore, the target gene of miR-200b-3p was investigated based on gene expression profile GSE177049 and miRWalk 2.0 database. The target relationship between miR-200b-3p and profilin 2 (PFN2) was investigatediin vitro/i. A total of 12 DEMs including miR-200b-3p were identified between preeclampsia placental tissues and control placental tissues, which were significantly enriched in several pathways, such as cell adhesion molecules (CAMs) and tight junction. Moreover, increased expression of miR-200b-3p was revealed in the placental tissues of preeclampsia patients, and overexpression of miR-200b-3p suppressed cell proliferation and migration but promoted apoptosis of trophoblast cells. Furthermore, PFN2 was confirmed as a target of miR-200b-3p, and overexpression of PFN2 reversed the inhibitory effects of miR-200b-3p overexpression on trophoblast cell migration. Our findings reveal that miR-200b-3p is upregulated in the placental tissues of patients with preeclampsia and promotes preeclampsia development via PFN2. miR-200b-3p may serve as a promising therapeutic target against preeclampsia.
- Published
- 2022
39. lncRNA TUG1 promotes the development of oral squamous cell carcinoma by regulating the MAPK signaling pathway by sponging miR-593-3p
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Lei, Jiang, Bing, Zhou, Dongjie, Fu, and Bo, Cheng
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Squamous Cell Carcinoma of Head and Neck ,Mice, Nude ,Cell Biology ,Mice ,MicroRNAs ,Cell Line, Tumor ,Animals ,Humans ,Mouth Neoplasms ,RNA, Long Noncoding ,Molecular Biology ,Cell Proliferation ,Signal Transduction ,Research Paper ,Developmental Biology - Abstract
Dysregulation of non‐coding RNAs (ncRNAs) has been proved to play important roles in oral squamous cell carcinoma (OSCC). This study aimed to determine the combined role of lncRNA TUG1, miR-593-3p, and MAPK signaling in oral squamous cell carcinoma (OSCC) development. Here, we found that TUG1 was up-regulated in OSCC tissues and cell lines. Silencing TUG1 suppressed proliferation migration, invasion and promoted apoptosis of OSCC cells. We also validated that knockdown of TUG1 suppressed MAPK signaling pathway and inhibited EMT process in OSCC cells. Then, a novel LncRNA TUG1/ miR-593-3p/MAPK axis was verified to rescue cell viability in OSCC cells. Mechanistically, miR-593-3p bound to lncRNA TUG1, and lncRNA TUG1 positively regulated MAPK related proteins through acting as RNA sponger for miR-593-3p. Further gain- and loss-of-function experiments evidenced that the protective effects of lncRNA TUG1 knock-down on OSCC cells were abrogated by silencing miRNA-593-3p. The OSCC nude mice model experiments demonstrated that depletion of TUG1 further inhibited tumor growth. In conclusion, appropriate diagnostic biomarkers and therapies for OSCC can be identified by targeting the TUG1/miR-593-3p/MAPK axis.
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- 2022
40. Time-course full profiling of circulating miRNAs in neurologically deceased organ donors: a proof of concept study to understand the onset of the cytokine storm
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Andrée-Anne Clément, Daphnée Lamarche, Marie-Hélène Masse, Cécilia Légaré, Lee-Hwa Tai, Laurence Fleury Deland, Marie-Claude Battista, Luigi Bouchard, and Frédérick D’Aragon
- Subjects
Inflammation ,Cancer Research ,Gene Expression Profiling ,AMP-Activated Protein Kinases ,DNA Methylation ,Proof of Concept Study ,Tissue Donors ,MicroRNAs ,Humans ,Cytokines ,Circulating MicroRNA ,Inflammation Mediators ,Cytokine Release Syndrome ,Molecular Biology ,Research Paper - Abstract
Neurologically deceased organ donors (NDDs) generally display an immune response involving an intense production of pro-inflammatory cytokines referred to as the cytokine storm. The sudden surge of inflammatory mediators in circulation promotes tissue and organ damages and ultimately leads to poor transplant outcome. As microRNAs (miRNAs) are frequently proposed as key regulators of inflammation and are relatively stable in circulation, changes in their profiles could play a role in the onset of the cytokine storm in NDDs. In this proof-of-concept study, we sought to investigate differentially abundant circulating miRNAs in a temporal manner between neurological death and organ recovery and to assess the association between specific miRNAs and levels of inflammatory cytokines in blood. Plasma samples from five NDDs were obtained at multiple time points between organ donation consent and organ recovery. Using a time-course analysis and miRNA sequencing, we identified 32 plasma miRNAs fluctuating between consent and organ recovery (false discovery rate; q-value < 0.1). Eleven miRNAs relatively abundant (>100 reads) and detected in all samples were selected for further biological pathway analysis (miR-486-3p, miR-103a-3p, miR-106b-3p, miR-182-5p, miR-101-3p, miR-10a-5p, miR-125a-5p, miR-146b-5p, miR-26a-5p, miR-423-5p, miR-92b-3p). These miRNAs targeted genes such as c-JUN (TNF signalling pathway) and eEF2 (AMPK pathway), suggesting a potential role in regulation of inflammation. Our results contribute to a better understanding of the miRNAs dynamic after neurological death in organ donors and could potentially be used to predict the related early cytokine storm.Trial registration: ClinicalTrials.gov ID NCT03786991. Registered December 2018
- Published
- 2022
41. Abnormal expression of lncRNA CASC9 in pneumonia children with respiratory failure and its feasible value for the clinical diagnosis of patients
- Author
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Zhou, Chi and Wu, Danfei
- Subjects
Gene Expression Regulation, Neoplastic ,Lipopolysaccharides ,Cell Line, Tumor ,Humans ,Apoptosis ,RNA, Long Noncoding ,Pneumonia ,Cell Biology ,Child ,Respiratory Insufficiency ,Molecular Biology ,Research Paper ,Developmental Biology - Abstract
lncRNA CASC9 expression was involved in a variety of diseases and exerted a protective role against inflammation and sepsis-induced injury. However, the role of CASC9 in severe pneumonia remains unclear. This study aimed to explore the potential diagnostic role of lncRNA CASC9 in severe pneumonia. The CASC9 expression levels were measured by RT-qPCR. The receiver operating characteristic curve (ROC) was conducted to evaluate the clinical diagnostic value of CASC9 in severe pneumonia. LPS-induced human lung fibroblast MRC-5 was used to establish the pneumonia model and then transfected with CASC9 overexpression vectors to evaluate the influence of CASC9 on cell viability and apoptosis. The inflammatory cytokines IL-1β, TNF-α, IL-6 levels were detected using a commercial enzyme-linked immunosorbent assay (ELISA). Pearson correlation analysis was used to explore the correlation between CASC9 expression and clinical data. The relative expression of CASC9 was downregulated in serum samples of severe pneumonia patients. The low expression of CASC9 in severe pneumonia was negatively correlated with several clinical data. The CASC9 had the relatively high area under ROC curve (AUC) values for distinguishing severe pneumonia from pneumonia children and healthy control. The elevated expression of CASC9 accelerated cell viability and diminished apoptosis in LPS-induced MRC-5 cells. The CASC9 expression was decreased in serum samples of severe pneumonia, and upregulation of CASC9 facilitated LPS-induced cell viability and inhibited apoptosis. In summary, CASC9 might be a diagnostic predictor and might act as a crucial regulatory roles in the progression of severe pneumonia.
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- 2022
42. An innovative systematic approach introduced the involved lncRNA-miR-mRNA network in cell cycle and proliferation after conventional treatments in breast cancer patients
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Maryam Mohsenikia, Solmaz Khalighfard, Ali Mohammad Alizadeh, Vahid Khori, Maziar Ghandian Zanjan, Mohammadreza Zare, Ramesh Omranipour, Elham Patrad, Hengamesadat Razavi, Ziba Veisi Malekshahi, and Zahra Bagheri-Hosseinabadi
- Subjects
Cell Cycle ,RNA-Binding Proteins ,Breast Neoplasms ,Cell Biology ,MicroRNAs ,Humans ,Female ,Gene Regulatory Networks ,RNA, Long Noncoding ,RNA, Messenger ,Apoptosis Regulatory Proteins ,Molecular Biology ,Cell Proliferation ,Research Paper ,Developmental Biology - Abstract
The present study aimed to explore the involved lncRNA-miRNA-mRNA network in the cell cycle and proliferation after conventional treatments in Luminal A breast cancer patients.The candidate miRNAs (miRs), lncRNAs, and mRNAs were first taken from the Gene Expression Omnibus and TCGA databases. The lncRNA–miR–mRNA network was then constructed using the high-throughput sequencing data. The expression levels of selected targets were measured in the breast cancer and healthy samples by the Real-Time PCR technique and compared with the clinical outcomes by the Kaplan-Meier method.Our analysis revealed a group of differentially expressed 3 lncRNAs, 9 miRs, and 14 mRNAs in breast cancer patients. A significant expression decrease of the selected tumor suppressor lncRNAs, miRs, and genes and a substantial expression increase of the selected onco-lncRNAs, oncomiRs, and oncogenes were obtained in the patients compared to the healthy group. The plasma levels of the lncRNAs, miRs, and mRNAs were more significant after the operation, chemotherapy, and radiotherapy than the pre-treatment. The Kaplan-Meier analysis indicated that the patients with a high expression of miR-21, miR-20b, IGF1R, and E2F2 and a low expression of miR-125a, PDCD4, and PTEN had exhibited a shorter overall survival rate.Our results suggested that the underlying mechanisms of the lncRNA, miRs, and mRNAs and relevant signaling pathways may be considered predictive and therapeutic targets for breast cancer.
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- 2022
43. Hsa_circ_0103232 promotes melanoma cells proliferation and invasion via targeting miR-661/RAB3D
- Author
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Lin, Xing, Zhong, Liang, Wang, Nian, Chu, Xuan, and Liu, Beizhong
- Subjects
rab3 GTP-Binding Proteins ,RNA, Circular ,Cell Biology ,MicroRNAs ,Cell Movement ,Cell Line, Tumor ,Humans ,Neoplasm Invasiveness ,Melanoma ,Molecular Biology ,In Situ Hybridization, Fluorescence ,Research Paper ,Cell Proliferation ,Developmental Biology - Abstract
Little is known about the role of hsa_circ_0103232 in melanoma. This study researched the role of hsa_circ_0103232 in melanoma progression. Hsa_circ_0103232 expression in clinical tissues of melanoma patients and melanoma cells was detected by qRT-PCR. Hsa_circ_0103232 localization in melanoma cells was visualized by fluorescence in situ hybridization. Hsa_circ_0103232 effect on melanoma cells viability, proliferation, migration, and invasion was explored by cell counting kit-8 (CCK-8) assay, Edu experiment, wound healing assay, and Transwell experiment. RNA pull-down assay and dual-luciferase reporter gene assay were performed to verify the binding of hsa_circ_0103232 with miR-661, and the binding of miR-661 and RAB3D. Xenograft tumor models were constructed. Western blot and immunohistochemistry were used for protein expression detection. Hsa_circ_0103232 expression was increased in melanoma patients, indicating lower overall survival. Hsa_circ_0103232 was mainly expressed in the cytoplasm of melanoma cells. Silencing hsa_circ_0103232 suppressed melanoma cell viability, proliferation, migration, invasion, and epithelial–mesenchymal transition (EMT) (P
- Published
- 2022
44. The RPA inhibitor HAMNO sensitizes Fanconi anemia pathway-deficient cells
- Author
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Jang, Seok-Won and Kim, Jung Min
- Subjects
enzymes and coenzymes (carbohydrates) ,Fanconi Anemia ,DNA Repair ,Fanconi Anemia Complementation Group D2 Protein ,Replication Protein A ,Humans ,Cell Biology ,Cisplatin ,Molecular Biology ,Fanconi Anemia Complementation Group Proteins ,Research Paper ,DNA Damage ,Developmental Biology - Abstract
The Fanconi anemia (FA) DNA repair pathway is required for DNA inter-strand crosslink (ICL) repair. Besides its role in ICL repair, FA proteins play a central role in stabilizing stalled replication forks, thereby ensuring genome integrity. We previously demonstrated that depletion of replication protein A (RPA) induces the activation of FA pathway leading to FANCD2 monoubiquitination and FANCD2 foci formation. Thus, we speculated that FA-deficient cells would be more sensitive to RPA inhibition compared to FA-proficient cells. Following treatment with RPA inhibitor HAMNO, we observed significant induction in FANCD2 monoubiquitination and foci formation as observed in RPA depletion. In addition, HAMNO treatment caused increased levels of γ-H2AX and S-phase accumulation in FA-deficient cells. Importantly, FA-deficient cells showed more increased sensitivity to HAMNO than FA-proficient cells. Moreover, in combination with cisplatin, HAMNO further enhanced the cytotoxicity of cisplatin in FA-deficient cells, while being less toxic against FA-proficient cells. This result suggests that RPA inhibition might be a potential therapeutic candidate for the treatment of FA pathway-deficient tumors.
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- 2022
45. LOXL2 small molecule inhibitor restrains malignant transformation of cervical cancer cells by repressing LOXL2-induced epithelial-mesenchymal transition (EMT)
- Author
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Peng, Ting, Lin, Shitong, Meng, Yifan, Gao, Peipei, Wu, Ping, Zhi, Wenhua, Ding, Wencheng, Cao, Canhui, and Wu, Peng
- Subjects
Gene Expression Regulation, Neoplastic ,Protein-Lysine 6-Oxidase ,Cell Transformation, Neoplastic ,Epithelial-Mesenchymal Transition ,Lysine ,Humans ,Uterine Cervical Neoplasms ,Female ,Amino Acid Oxidoreductases ,Cell Biology ,Molecular Biology ,Research Paper ,Developmental Biology - Abstract
Lysyl oxidase-like 2 (LOXL2) is a member of the lysine oxidase (LOX) family. Although its overexpression is known to play pivotal roles in carcinogenesis, its involvement in cervical cancer remains undefined. Here, we comprehensively explored the expression level and functional mechanism of LOXL2 in cervical cancer using bioinformatics and experimental methods. Bioinformatics analysis revealed that LOXL2 was significantly upregulated in cervical cancer compared to normal tissues. Enrichment analysis showed that most positively or negatively correlated genes of LOXL2 were correlated with extracellular matrix (ECM) formation and epithelial-mesenchymal transition (EMT). Further experiments confirmed that overexpression of LOXL2 greatly enhanced the malignant transformation abilities (e.g. proliferation, invasion, and migration) of cervical cancer cells via mediation of EMT. Furthermore, the small molecule inhibitor of LOXL2 ((2-Chloropyridin-4-yl) methanamine hydrochloride) significantly decreased the invasive ability of cervical cancer by reversing the process of LOXL2-induced EMT. In summary, LOXL2 may be a promising diagnostic and therapeutic biomarker for cervical cancer, and its small molecule inhibitor may be an effective anti-tumor drug. Abbreviations: LOXL2 Lysyl oxidase-like 2; LOX lysine oxidase; CI confidence interval; HR hazard ratio; ECM extracellular matrix; EMT epithelial-mesenchymal transition; OS overall survival; IC50 median inhibitory concentration; PPI protein-protein interaction.
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- 2022
46. Co-expression patterns explain how a basic transcriptional role for MYC modulates
- Author
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Melanie Haas, Kucherlapati
- Subjects
Proto-Oncogene Proteins B-raf ,Lung Neoplasms ,MAP Kinase Signaling System ,Adenomatous Polyposis Coli Protein ,Colonic Neoplasms ,Humans ,Adenocarcinoma of Lung ,Adenocarcinoma ,Wnt Signaling Pathway ,Cyclin-Dependent Kinases ,Research Paper - Abstract
A subset of proliferation genes that are associated with origin licensing, firing, and DNA synthesis has been compared to known drivers of colon (COAD) and lung (LUAD) adenocarcinomas using Spearman’s rank correlation coefficients. The frequency with which APC, CTNNB1, KRAS, MYC, Braf, TP53, Rb1, EGFR, and cell cycle components have direct or indirect co-expression with the proliferation factors permits identification of their expression relative to the G1-S phase of the cell cycle. Here, adenomatous polyposis coli (APC), a negative regulator of Wnt signaling known to function through MYC, indirectly co-expresses at the same frequency as proliferation genes in both COAD and LUAD, consistent with M phase expression. However, APC is indirectly co-expressed with MYC and is found mutated only in COAD. MYC is thought to function at the interface of transcription and replication, acting through the SWI/SNF chromatin remodeling complex, and increased or decreased expression of MYC can induce or repress tumorigenesis, respectively. These data suggest that transcription of APC during the M phase with low MYC co-expression contributes by an unknown mechanism to APC mutations and Wnt pathway deregulation in COAD and that upper and lower limits of MYC expression, enforced by the cell cycle, may influence cancer differentially. Other Wnt signaling components co-expressed in the low MYC context in COAD also have significantly higher mutation frequencies, supporting the hypothesis. Additionally, Braf is found here to have direct co-expression with multiple proliferation factors in non-EGFR activated LUAD, and EGFR-activated LUAD are completely deregulated with respect to E2F(s) 4/5/6 expression, potentially explaining the low proliferation rates seen in LUAD. Abbreviations: TCGA: The cancer genome atlas; PANCAN: Pan cancer; CDK: Cyclin-dependent kinase; COAD: Colon adenocarcinoma; LUAD: Lung adenocarcinoma; Wnt: Wingless/integrated signaling; MAPK: Mitogen-activated protein kinase; APC: Adenomatous polyposis coli gene; CIN: Chromosomal instability; GS: Genome stabile; MMR: Mismatch repair; mRNA: Messenger RNA; RPKM: Reads per kilobase of transcription per million mapped reads; RSEM: RNA Seq by expectation maximization; FDR: False discovery rate; GTEx: Genotype-Tissue Expression portal; MPF: Maturation-promoting factor; SCF: Skp1-Cul1-F-box; HH: Hedgehog; EMT: Epithelial mesenchymal transition; RB: Retinoblastoma; EGFR: Epidermal growth factor receptor; r(s) or ρ: Spearman’s correlation
- Published
- 2023
47. m
- Author
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Wei, Wang, Ying, He, Lu-Lu, Zhai, Long-Jiang, Chen, Li-Chao, Yao, Lun, Wu, Zhi-Gang, Tang, and Jin-Zhuo, Ning
- Subjects
Pancreatic Neoplasms ,Adenosine ,Humans ,Alpha-Ketoglutarate-Dependent Dioxygenase FTO ,RNA ,RNA, Messenger ,DNA Methylation ,Research Paper - Abstract
Pancreatic cancer (PC) is one of the most fatal cancers with a very poor prognosis. Here, we found that N(6)-methyladenosine (m(6)A) RNA demethylase fat mass and obesity-related protein (FTO) promote the growth, migration and invasion of PC. FTO expression level is increased in human PC and is associated with poor prognosis of PC patients. Knockdown of FTO increases m(6)A methylation of TFPI-2 mRNA in PC cells, thereby increasing mRNA stability via the m(6)A reader YTHDF1, resulting in up-regulation of TFPI-2 expression, and inhibits PC proliferation, colony formation, sphere formation, migration and invasion in vitro, as well as tumour growth in vivo. Rescue assay further confirms that FTO facilitates cancer progression by reducing the expression of TFPI-2. Mechanistically, FTO promotes the progression of PC at least partially through reducing m(6)A/YTHDF1 mediated TFPI-2 mRNA stability. Our findings reveal that FTO, as an m(6)A demethylase, plays a critical role in promoting PC growth, migration and invasion, suggesting that FTO may be a potential therapeutic target for treating PC.
- Published
- 2023
48. Outer membrane vesicles produced by pathogenic strains of
- Author
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Laure, David, Frédéric, Taieb, Marie, Pénary, Pierre-Jean, Bordignon, Rémi, Planès, Salimata, Bagayoko, Valérie, Duplan-Eche, Etienne, Meunier, and Eric, Oswald
- Subjects
Hemolysin Proteins ,Inflammasomes ,Escherichia coli ,Autophagy ,Humans ,Escherichia coli Infections ,Research Paper - Abstract
Escherichia coli strains are responsible for a majority of human extra-intestinal infections, resulting in huge direct medical and social costs. We had previously shown that HlyF encoded by a large virulence plasmid harbored by pathogenic E. coli is not a hemolysin but a cytoplasmic enzyme leading to the overproduction of outer membrane vesicles (OMVs). Here, we showed that these specific OMVs inhibit the macroautophagic/autophagic flux by impairing the autophagosome-lysosome fusion, thus preventing the formation of acidic autolysosomes and autophagosome clearance. Furthermore, HlyF-associated OMVs were more prone to activate the non-canonical inflammasome pathway. Because autophagy and inflammation are crucial in the host’s response to infection especially during sepsis, our findings revealed an unsuspected role of OMVs in the crosstalk between bacteria and their host, highlighting the fact that these extracellular vesicles have exacerbated pathogenic properties. Abbreviations: AIEC: adherent-invasive E. coliBDI: bright detail intensityBMDM: bone marrow‐derived macrophagesCASP: caspaseE. coli: Escherichia coliEHEC: enterohemorrhagic E. coliExPEC: extra-intestinal pathogenic E. coliGSDMD: gasdermin DGFP: green fluorescent proteinHBSS: Hanks’ balanced salt solutionHlyF: hemolysin FIL1B/IL‐1B: interleukin 1 betaISX: ImageStreamX systemLPS: lipopolysaccharideMut: mutatedOMV: outer membrane vesicleRFP: red fluorescent proteinTEM: transmission electron microscopyWT: wild-type
- Published
- 2023
49. Intestinal aging is alleviated by uridine via regulating inflammation and oxidative stress
- Author
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Na, Jiang and Zhiwei, Zhao
- Subjects
Inflammation ,Aging ,Mice ,Oxidative Stress ,Animals ,Humans ,Uridine ,Antioxidants ,Research Paper - Abstract
Many countries in the world are stepping into the aging society with the challenge of the increasing agin gpopulation. The physiological functions of the human body begins to decline with aging, and the intestinal tract as the most important digestive organ will also be aging. How to relieve or reverse aging is an important scientific problem.The aging model in vivo and in vitro was established. Western-blot, indirect immunofluorescence and immunohistochemistry were carried out to explore the anti-aging effect of uridine.In the current study, we examined the anti-aging effect of uridine in vivo and in vitro experiments. In vitro cell model, we found that the aging level of intestinal tract was significantly reduced by uridine, uridine treatment down-regulated the Sa-β-gal-positive cells. Furthermore, the levels of inflammation and oxidative stress were also significantly reduced by uridine treatment. On this basis, in vivo experiments, we found that the aging level of mice fed with uridine was significantly lower than that of the control group as demonstrated by immunohistochemistry and Western blot analyses.In conclusion, our current research indicates that uridine shows a good anti-aging effect,which suggests that uridine is expected to be used as a health food or clinical drug to treat intestinal aging.
- Published
- 2023
50. Compound cellular stress maximizes apoptosis independently of p53 in glioblastoma
- Author
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Cheng-Jung Ho, Cheng-Yu Tsai, Wei-Hua Zhu, Yu-Hsuan Pao, Hsin-Wen Chen, Chieh-Ju Hu, Yi-Lin Lee, Tzu-Shuo Huang, Chung-Hwan Chen, Joon-Khim Loh, Yi-Ren Hong, and Chihuei Wang
- Subjects
Bortezomib ,Vorinostat ,Doxorubicin ,Cell Line, Tumor ,Humans ,Apoptosis ,Cell Biology ,Tumor Suppressor Protein p53 ,Glioblastoma ,Molecular Biology ,Developmental Biology ,Research Paper - Abstract
We examined the apoptotic response of two glioblastoma cells, p53 wild type U87 and p53 mutated T98G, to doxorubicin, bortezomib, and vorinostat, which respectively target DNA, 26S proteasome and histone deacetylase, to clarify p53ʹs function in apoptosis. We demonstrated that doxorubicin induced apoptosis in U87 cells but not in T98G cells. The level of p53 was definitively correlated to the extent of DNA damage and apoptosis initiation. Dominant-negative p53 reduced p21 expression, but did not affect doxorubicin-induced apoptosis, so the transcriptional activity of p53 seemed not to participate in doxorubicin-induced apoptosis. However, p53 concentrated into the nucleus during heavy apoptosis. Bortezomib could induce apoptosis in U87 with high sensitivity and T98G cells with low sensitivity. In contrast, vorinostat promoted apoptosis in both U87 and T98G cells and reduced the basal level of p53 in U87 cells, indicating that p53 played no role in the vorinostat-induced apoptosis. To clearly define the role of p53 in bortezomib- and doxorubicin-induced apoptosis, we combined doxorubicin with bortezomib to treat U87 cells to assess this combination’s effect on apoptosis and p53 status. Interestingly, the combination of doxorubicin with bortezomib engendered compound stress, resulting in a synergistic outcome for apoptosis in U87 cells. However, the amounts of p53 in the total count and in the nucleus were much lower with the combination than with doxorubicin alone, suggesting that p53 played no role in either the compound stress, doxorubicin-only or bortezomib-induced apoptosis.
- Published
- 2023
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