1. Profiling the B/T cell receptor repertoire of lymphocyte derived cell lines
- Author
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Tan, Kar-Tong, Ding, Ling-Wen, Sun, Qiao-Yang, Lao, Zhen-Tang, Chien, Wenwen, Ren, Xi, Xiao, Jin-Fen, Loh, Xin Yi, Xu, Liang, Lill, Michael, Mayakonda, Anand, Lin, De-Chen, Yang, Henry, and Koeffler, H Phillip
- Subjects
Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Immunology ,Rare Diseases ,Lymphoma ,Hematology ,Cancer ,Aetiology ,2.1 Biological and endogenous factors ,B-Lymphocytes ,Cell Line ,Tumor ,Hematologic Neoplasms ,Herpesvirus 4 ,Human ,Humans ,Lymphocytes ,Neoplasms ,RNA ,Receptors ,Antigen ,B-Cell ,Receptors ,Antigen ,T-Cell ,BCR/TCR receptor repertoire ,EBV lymphocytes ,Cancer cell lines ,Public Health and Health Services ,Oncology & Carcinogenesis ,Oncology and carcinogenesis ,Epidemiology - Abstract
BackgroundClonal VDJ rearrangement of B/T cell receptors (B/TCRs) occurring during B/T lymphocyte development has been used as a marker to track the clonality of B/T cell populations.MethodsWe systematically profiled the B/T cell receptor repertoire of 936 cancer cell lines across a variety of cancer types as well as 462 Epstein-Barr Virus (EBV) transformed normal B lymphocyte lines using RNA sequencing data.ResultsRearranged B/TCRs were readily detected in cell lines derived from lymphocytes, and subclonality or potential biclonality were found in a number of blood cancer cell lines. Clonal BCR/TCR rearrangements were detected in several blast phase CML lines and unexpectedly, one gastric cancer cell line (KE-97), reflecting a lymphoid origin of these cells. Notably, clonality was highly prevalent in EBV transformed B lymphocytes, suggesting either transformation only occurred in a few B cells or those with a growth advantage dominated the transformed population through clonal evolution.ConclusionsOur analysis reveals the complexity and heterogeneity of the BCR/TCR rearrangement repertoire and provides a unique insight into the clonality of lymphocyte derived cell lines.
- Published
- 2018