1. DropBlot: single-cell western blotting of chemically fixed cancer cells.
- Author
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Liu, Yang and Herr, Amy
- Subjects
Humans ,Single-Cell Analysis ,Blotting ,Western ,Cell Line ,Tumor ,Formaldehyde ,Female ,Receptor ,ErbB-2 ,Epithelial Cell Adhesion Molecule ,Breast Neoplasms ,Tissue Fixation ,Proteomics ,Vimentin ,Microfluidics ,Polymers - Abstract
Archived patient-derived tissue specimens play a central role in understanding disease and developing therapies. To address specificity and sensitivity shortcomings of existing single-cell resolution proteoform analysis tools, we introduce a hybrid microfluidic platform (DropBlot) designed for proteoform analyses in chemically fixed single cells. DropBlot serially integrates droplet-based encapsulation and lysis of single fixed cells, with on-chip microwell-based antigen retrieval, with single-cell western blotting of target antigens. A water-in-oil droplet formulation withstands the harsh chemical (SDS, 6 M urea) and thermal conditions (98 °C, 1-2 hr) required for effective antigen retrieval, and supports analysis of retrieved protein targets by single-cell electrophoresis. We demonstrate protein-target retrieval from unfixed, paraformaldehyde-fixed (PFA), and methanol-fixed cells. Key protein targets (HER2, GAPDH, EpCAM, Vimentin) retrieved from PFA-fixed cells were resolved and immunoreactive. Relevant to biorepositories, DropBlot profiled targets retrieved from human-derived breast tumor specimens archived for six years, offering a workflow for single-cell protein-biomarker analysis of sparing biospecimens.
- Published
- 2024