1. Terminal Deoxynucleotidyl Transferase and T7 Exonuclease-Aided Amplification Strategy for Ultrasensitive Detection of Uracil-DNA Glycosylase
- Author
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Yi-Chen Du, Kwangil Kim, An-Na Tang, Yu-Peng Zhang, De-Ming Kong, Yunxi Cui, Guo-Ying Sun, and Xiao-Yu Li
- Subjects
Biosensing Techniques ,02 engineering and technology ,01 natural sciences ,DNA methyltransferase ,Analytical Chemistry ,chemistry.chemical_compound ,DNA Nucleotidylexotransferase ,Limit of Detection ,Humans ,Uracil-DNA Glycosidase ,Enzyme Assays ,Oligonucleotide ,010401 analytical chemistry ,Nucleic Acid Hybridization ,Base excision repair ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Restriction enzyme ,Exodeoxyribonucleases ,chemistry ,Terminal deoxynucleotidyl transferase ,Biochemistry ,DNA glycosylase ,Uracil-DNA glycosylase ,0210 nano-technology ,DNA ,HeLa Cells - Abstract
As one of the key initiators of the base excision repair process, uracil-DNA glycosylase (UDG) plays an important role in maintaining genomic integrity. It has been found that aberrant expression of UDG is associated with a variety of diseases. Thus, accurate and sensitive detection of UDG activity is of critical significance for biomedical research and early clinical diagnosis. Here, we developed a novel fluorescent sensing platform for UDG activity detection based on a terminal deoxynucleotidyl transferase (TdT) and T7 exonuclease (T7 Exo)-aided recycling amplification strategy. In this strategy, only two DNA oligonucleotides (DNA substrate containing one uracil base and Poly dT probe labeled with a fluorophore/quencher pair) are used. UDG catalyzes the removal of uracil base from the enclosed dumbbell-shape DNA substrate to give an apyrimidinic site, at which the substrate oligonucleotide is cleaved by endonuclease IV. The released 3'-end can be elongated by TdT to form a long deoxyadenine-rich (Poly dA) tail, which may be used as a recyclable template to initiate T7 Exo-mediated hybridization-digestion cycles of the Poly dT probe, giving a significantly enhanced fluorescence output. The proposed UDG-sensing strategy showed excellent selectivity and high sensitivity with a detection limit of 1.5 × 10-4 U/mL. The sensing platform was also demonstrated to work well for UDG inhibitor screening and inhibitory activity evaluation, thus holding great potential in UDG-related disease diagnosis and drug discovery. The proposed strategy can be easily used for the detection of other DNA repair-related enzymes by simply changing the recognition site in DNA substrate and might also be extended to the analysis of some DNA/RNA-processing enzymes, including restriction endonuclease, DNA methyltransferase, polynucleotide kinase, and so on.
- Published
- 2018
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