7 results on '"Kai-qi ZHANG"'
Search Results
2. Genetics of Prostate Cancer
- Author
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Kai Qi Zhang, Brian K. Suarez, James K. Burmester, Douglas J. Reding, William J. Catalona, and Sherry A. Salzman
- Subjects
Adult ,Male ,17-Hydroxysteroid Dehydrogenases ,Biology ,Familial prostate cancer ,Prostate cancer ,Chromosome 16 ,Cell Line, Tumor ,medicine ,Humans ,Genetic Testing ,Gene ,Original Research ,Aged ,Community and Home Care ,Genetics ,Polymorphism, Genetic ,Chromosome Mapping ,Prostatic Neoplasms ,Cancer ,Genomics ,General Medicine ,Chromoplexy ,Middle Aged ,medicine.disease ,Alternative Splicing ,Genetic marker ,Human genome ,Chromosomes, Human, Pair 16 - Abstract
Prostate cancer is the most frequently diagnosed visceral cancer of men, responsible for approximately 40,000 deaths in adult males per year. To identify the genetic causes of prostate cancer, we performed a whole genome scan of affected sib pairs, using DNA markers spaced evenly across the human genome. We demonstrated that regions on chromosomes 1, 4, 5, 7, 8, 11, 16 and 19 might harbor genes that predispose individuals to prostate cancer and may affect tumor growth rate and tumor aggressiveness. Here we present DNA sequence analysis of KIAA 0872 and 17-beta hydroxysteroid dehydrogenase that are located on chromosome 16 within the mapped region, and we demonstrate that neither of these genes carries mutations in the protein coding region or their splice junction sites. These results suggest that these genes are less likely to be associated with the cause of familial prostate cancer.
- Published
- 2003
3. CYP4F2 genetic variant alters required warfarin dose
- Author
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Kai Qi Zhang, Jason Hubbard, Charles S. Eby, Tarif Awad, Mat Falkowski, Brian F. Gage, Richard L. Berg, Humberto Vidaillet, Paul Gardina, Yaron Turpaz, John R. Schmelzer, Julie A. Johnson, Ingrid Glurich, James K. Burmester, Michael D. Caldwell, Amy Brower, Cristi R. King, Taimour Y. Langaee, and Steven H. Yale
- Subjects
Genotype ,medicine.drug_class ,CYP4F2 ,Immunology ,Pharmacology ,Biology ,Biochemistry ,Polymorphism, Single Nucleotide ,Hemostasis, Thrombosis, and Vascular Biology ,Therapeutic index ,Cytochrome P-450 Enzyme System ,Gene Frequency ,Genetic variation ,medicine ,Humans ,heterocyclic compounds ,cardiovascular diseases ,Cytochrome P450 Family 4 ,Adverse effect ,Models, Genetic ,Anticoagulant ,Warfarin ,Reproducibility of Results ,Cell Biology ,Hematology ,Vitamin K epoxide reductase ,VKORC1 ,medicine.drug - Abstract
Warfarin is an effective, commonly prescribed anticoagulant used to treat and prevent thrombotic events. Because of historically high rates of drug-associated adverse events, warfarin remains underprescribed. Further, interindividual variability in therapeutic dose mandates frequent monitoring until target anticoagulation is achieved. Genetic polymorphisms involved in warfarin metabolism and sensitivity have been implicated in variability of dose. Here, we describe a novel variant that influences warfarin requirements. To identify additional genetic variants that contribute to warfarin requirements, screening of DNA variants in additional genes that code for drug-metabolizing enzymes and drug transport proteins was undertaken using the Affymetrix drug-metabolizing enzymes and transporters panel. A DNA variant (rs2108622; V433M) in cytochrome P450 4F2 (CYP4F2) was associated with warfarin dose in 3 independent white cohorts of patients stabilized on warfarin representing diverse geographic regions in the United States and accounted for a difference in warfarin dose of approximately 1 mg/day between CC and TT subjects. Genetic variation of CYP4F2 was associated with a clinically relevant effect on warfarin requirement.
- Published
- 2008
4. Evaluation of genetic factors for warfarin dose prediction
- Author
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John R. Schmelzer, Steven H. Yale, Kai Qi Zhang, Michael D. Caldwell, Humberto Vidaillet, Ingrid Glurich, James K. Burmester, and Richard L. Berg
- Subjects
Adult ,Male ,Carboxylic Acids ,Pharmacology ,Drug Administration Schedule ,Mixed Function Oxygenases ,chemistry.chemical_compound ,Vitamin K Epoxide Reductases ,medicine ,Humans ,Dosing ,Genetic Testing ,CYP2C9 ,Aged ,Cytochrome P-450 CYP2C9 ,Original Research ,Community and Home Care ,Aged, 80 and over ,Polymorphism, Genetic ,Factor VII ,Anticoagulant drug ,business.industry ,Maintenance dose ,Warfarin ,Anticoagulants ,General Medicine ,Middle Aged ,chemistry ,Cardiovascular Diseases ,Pharmacogenetics ,Female ,VKORC1 ,Aryl Hydrocarbon Hydroxylases ,business ,medicine.drug - Abstract
Objectives: Warfarin is a commonly prescribed anticoagulant drug used to prevent thromboses that may arise as a consequence of orthopedic and vascular surgery or underlying cardiovascular disease. Warfarin is associated with a notoriously narrow therapeutic window where small variations in dosing may result in hemorrhagic or thrombotic complications. To ultimately improve dosing of warfarin, we evaluated models for stable maintenance dose that incorporated both clinical and genetic factors. Method: A model was constructed by evaluating the contribution to dosing variability of the following clinical factors: age, gender, body surface area, and presence or absence of prosthetic heart valves or diabetes. The model was then sequentially expanded by incorporating polymorphisms of cytochrome P450 (CYP) 2C9; vitamin K 2,3 epoxide reductase complex, subunit 1 (VKORC1); gamma carboxylase; factor VII; and apolipoprotein (Apo) E genes. Results: Of genetic factors evaluated in the model, CYP2C9 and VKORC1 each contributed substantially to dose variability, and together with clinical factors explained 56% of the individual variability in stable warfarin dose. In contrast, gamma carboxylase, factor VII and Apo E polymorphisms contributed little to dose variability. Conclusion: The importance of CYP2C9 and VKORC1 to patient-specific dose of warfarin has been confirmed, while polymorphisms of gamma carboxylase, factor VII and Apo E genes did not substantially contribute to predictive models for stable warfarin dose.
- Published
- 2007
5. Small molecule antagonists of the TGF-beta1/TGF-beta receptor binding interaction
- Author
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Richard A. Dart, Kai Qi Zhang, Sherry A. Salzman, and James K. Burmester
- Subjects
Cancer Research ,TGF alpha ,Drug Evaluation, Preclinical ,Gene Expression ,CHO Cells ,Biology ,Transforming Growth Factor beta1 ,chemistry.chemical_compound ,Cricetulus ,Cell Line, Tumor ,Cricetinae ,Animals ,Humans ,Growth factor receptor inhibitor ,Receptor ,Cell growth ,Hematology ,General Medicine ,TGF beta receptor 2 ,Blotting, Northern ,Molecular biology ,Activins ,Blot ,Oncology ,chemistry ,Growth inhibition ,Receptors, Transforming Growth Factor beta ,Transforming growth factor ,Protein Binding - Abstract
Excessive and inappropriate action of transforming growth factor (TGF)-beta has been implicated in the pathogenesis of several disease processes, especially cancer and fibrosis. To identify antagonists of the TGF- beta ligand-binding domain that may have therapeutic potential, we screened the National Cancer Institute open access chemical repository for molecules that inhibited binding of TGF-beta to the type II receptor (TbetaRII). About 30,000 molecules were screened resulting in the identification of five structurally related molecules that reduced binding of TGF-beta1 to soluble TbetaRII with an ED50 of approx 10 microM. The chemicals blocked inhibition of Mv1Lu cell growth by TGF-beta, TGF-beta - induced expression of luciferase driven by the TGF-beta response element, and induction of plasminogen inhibitor mRNA detected by Northern blot. In contrast, the chemicals did not block activin-induced inhibition of cell growth. Our results identify a novel chemical group that blocks binding of TGF-beta to its receptor and may result in novel treatment for disease.
- Published
- 2006
6. Analysis of candidate genes for prostate cancer
- Author
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Carol H. Jin, Kai Qi Zhang, Douglas J. Reding, Brian K. Suarez, Raymond D. Miller, Sherry A. Salzman, Jennifer H. Lin, William J. Catalona, and James K. Burmester
- Subjects
PCA3 ,Male ,Candidate gene ,Likelihood Functions ,Genotype ,Cancer ,Prostatic Neoplasms ,Single-nucleotide polymorphism ,Biology ,medicine.disease ,MLH1 ,Bioinformatics ,Polymorphism, Single Nucleotide ,Metastasis ,Prostate cancer ,Gene Frequency ,Genetics ,medicine ,Cancer research ,Humans ,Genetic Predisposition to Disease ,Neoplasm Invasiveness ,Genetics (clinical) - Abstract
Considerable evidence demonstrates that genetic factors are important in the development and aggressiveness of prostate cancer. To identify genetic variants that predispose to prostate cancer we tested candidate SNPs from genomic regions that show linkage to prostate cancer susceptibility and/or aggressiveness, as well as genes that show a significant difference in mRNA expression level between tumor and normal tissue. Cases had histologically verified prostate cancer. Controls were at least 65 years old, never registered a PSA above 2.5 ng/ml, always had digital rectal examinations that were not suspicious for cancer, and have no known family history of prostate cancer. Thirty-nine coding SNPs and nine non-coding SNPs were tested in up to 590 cases and 556 controls resulting in over 40,000 SNP genotypes. Significant differences in allele frequencies between cases and controls were observed for ID3 (inhibitor of DNA binding), p = 0.05, HPN (hepsin), p = 0.009, BCAS1 (breast carcinoma amplified sequence 1), p = 0.007, CAV2 (caveolin 2), p = 0.007, EMP3 (epithelial membrane protein 3), p < 0.0001, and MLH1 (mutL homolog 1), p < 0.0001. SNPs in three of these genes (BCAS1, EMP3 and MLH1) remained significant in an age-matched subsample.
- Published
- 2004
7. Expression and initial promoter characterization of PCAN1 in retinal tissue and prostate cell lines
- Author
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Sherry A. Salzman, William J. Catalona, James K. Burmester, Deanna Cross, J. Burke, Kai Qi Zhang, and Douglas J. Reding
- Subjects
Male ,Cancer Research ,Stromal cell ,Cellular differentiation ,Apoptosis ,Biology ,Retina ,Prostate cancer ,Prostate ,Gene expression ,LNCaP ,medicine ,Tumor Cells, Cultured ,Humans ,Promoter Regions, Genetic ,Regulation of gene expression ,Reverse Transcriptase Polymerase Chain Reaction ,Retinoblastoma ,Prostatic Neoplasms ,Cell Differentiation ,Epithelial Cells ,Hematology ,General Medicine ,Middle Aged ,medicine.disease ,Molecular biology ,Neoplasm Proteins ,Gene Expression Regulation, Neoplastic ,medicine.anatomical_structure ,Oncology ,Cell culture - Abstract
Prostate cancer is the most frequently diagnosed neoplasia in men and one of the leading causes of cancer-related deaths in men over 60. In an effort to understand the molecular events leading to prostate cancer, we have identified PCAN1 (prostate cancer gene 1) (also known as GDEP), a gene that is highly expressed in prostate epithelial tissue and frequently mutated in prostate tumors. Here we demonstrate its expression in neural retina, and retinoblastoma cell culture but not retinal pigment epithelial cell culture. We further characterize PCAN1 expression in the prostate cell lines RWPE1, RWPE2, and LnCAP PGC. We demonstrate an increase in expression when the cells are grown in the presence of Matrigel, an artificial extracellular basement membrane. Expression was time dependent, with expression observed on d 6 and little or no expression on d 12. Testosterone was not found to increase PCAN1 expression in this culture system. In addition, normal prostate epithelial cells co-cultured with normal prostate stromal cells did not exhibit PCAN1 expression at any time. To definitively locate the transcription initiation sites, we performed restriction-ligase-mediated 5′ RACE, to selectively amplify only mRNA with a 5′ cap. An initial characterization of the sequence upstream of the initiation sites determined six possible binding sites for the prostate specific regulatory protein NKX3. 1 and four potential binding sites for the PPAR/RXR heterodimer that is involved in the control of cell differentiation and apoptosis.
- Published
- 2003
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