30 results on '"Cheng-Hong Tsai"'
Search Results
2. Immune signatures of bone marrow cells can independently predict prognosis in patients with myelodysplastic syndrome
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Chi-Yuan Yao, Hsin-An Hou, Chia-Lang Hsu, Chien-Chin Lin, Yu-Hung Wang, Wen-Chien Chou, Cheng-Hong Tsai, and Hwei-Fang Tien
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Male ,Oncology ,medicine.medical_specialty ,Biopsy ,Bone Marrow Cells ,Kaplan-Meier Estimate ,Gene mutation ,Immunophenotyping ,Pathogenesis ,Immune system ,Bone Marrow ,Internal medicine ,medicine ,Humans ,Aged ,Cluster of differentiation ,business.industry ,Proportional hazards model ,Gene Expression Profiling ,Myelodysplastic syndromes ,High-Throughput Nucleotide Sequencing ,Hematology ,Middle Aged ,Prognosis ,medicine.disease ,Cell Transformation, Neoplastic ,medicine.anatomical_structure ,International Prognostic Scoring System ,Myelodysplastic Syndromes ,Mutation ,Female ,Disease Susceptibility ,Bone marrow ,business ,Biomarkers - Abstract
Increasing evidence supports the role of the immune microenvironment and associated signalling in the pathogenesis of myelodysplastic syndromes (MDS). Nevertheless, the clinical relevancy of immune signals in patients with MDS remains elusive. To address this, we used single-sample gene-set enrichment analysis to score immune signatures of bone marrow (BM) samples from 176 patients with primary MDS. Enhanced signatures of 'immature dendritic cells' and 'natural killer cells with cluster of differentiation (CD)56bright' were correlated with better overall survival (OS), whilst higher 'CD103+ signature' was associated with reduced survival. An MDS-Immune-Risk (MIR) scoring system was constructed based on the weighted sums derived from Cox regression analysis. High MIR scores were correlated with higher revised International Prognostic Scoring System (IPSS-R) scores and mutations in ASXL transcriptional regulator 1 (ASXL1), Runt-related transcription factor 1 (RUNX1), and tumour protein p53 (TP53). High-score patients had significantly inferior leukaemia-free survival (LFS) and OS than low-score patients. The prognostic significance of MIR scores for survival remained valid across IPSS-R subgroups and was validated in two independent cohorts. Multivariable analysis revealed that a higher MIR score was an independent adverse risk factor for LFS and OS. We further proposed a model with the combination of MIR score and gene mutations to be complementary to IPSS-R for the prognostication of LFS and OS of patients with MDS.
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- 2021
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3. PD‐L1 expression in megakaryocytes and its clinicopathological features in primary myelofibrosis patients
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Chang-Tsu Yuan, Sze-Hwei Lee, Wen-Chien Chou, Chien-Chin Lin, Hwei-Fang Tien, Jia-Hao Liu, Ko-Ping Chang, Jih-Lu Tang, Chao-Hong Wei, Hsin-An Hou, and Cheng-Hong Tsai
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Oncology ,medicine.medical_specialty ,medicine.disease_cause ,B7-H1 Antigen ,Pathology and Forensic Medicine ,Proinflammatory cytokine ,Pathogenesis ,megakaryocyte ,checkpoint ,Megakaryocyte ,Internal medicine ,PD-L1 ,White blood cell ,Pathology ,medicine ,RB1-214 ,Humans ,Myelofibrosis ,Myeloproliferative Disorders ,biology ,business.industry ,Original Articles ,Immune dysregulation ,medicine.disease ,SP142 ,medicine.anatomical_structure ,JAK2 ,PD‐L1 ,Primary Myelofibrosis ,biology.protein ,Immunohistochemistry ,Original Article ,business ,Megakaryocytes - Abstract
Myeloproliferative neoplasms (MPNs) are characterized by upregulation of proinflammatory cytokines and immune dysregulation, which provide a reasonable basis for immunotherapy in patients. Megakaryocytes are crucial in the pathogenesis of primary myelofibrosis (PMF), the most clinically aggressive subtype of MPN. In this study, we aimed to explore PD‐L1 (programmed death‐ligand 1) expression in megakaryocytes and its clinical implications in PMF. We analyzed PD‐L1 expression on megakaryocytes in PMF patients by immunohistochemistry and correlated the results with clinicopathological features and molecular aberrations. We employed a two‐tier grading system considering both the proportion of cells positively stained and the intensity of staining. Among the 85 PMF patients, 41 (48%) showed positive PD‐L1 expression on megakaryocytes with the immune‐reactive score ranging from 1 to 12. PD‐L1 expression correlated closely with higher white blood cell count (p = 0.045), overt myelofibrosis (p = 0.010), JAK2V617F mutation (p = 0.011), and high‐molecular risk mutations (p = 0.045), leading to less favorable overall survival in these patients (hazard ratio 0.341, 95% CI 0.135–0.863, p = 0.023). Our study provides unique insights into the interaction between immunologic and molecular phenotypes in PMF patients. Future work to explore the translational potential of PD‐L1 in the clinical setting is needed.
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- 2021
4. Clinical implications of sequential MRD monitoring by NGS at 2 time points after chemotherapy in patients with AML
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Feng-Ming Tien, Ming-Chih Liu, Mei-Hsuan Tseng, Wen-Chien Chou, Chien-Yu Chen, Ming Yao, Liang-In Lin, Hwei-Fang Tien, Dung-Chi Wu, Yuan-Yeh Kuo, Hsin-An Hou, Chiawen Liu, Cheng-Hong Tsai, Chien-Chin Lin, Yi-Kuang Chuang, Mei-Fang Hou, Yen-Ling Peng, and Jih-Luh Tang
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Oncology ,medicine.medical_specialty ,Neoplasm, Residual ,Clinical Trials and Observations ,business.industry ,High-Throughput Nucleotide Sequencing ,Induction chemotherapy ,Consolidation Chemotherapy ,Hematology ,Prognosis ,Minimal residual disease ,Chemotherapy regimen ,body regions ,Leukemia, Myeloid, Acute ,medicine.anatomical_structure ,hemic and lymphatic diseases ,Internal medicine ,Humans ,Medicine ,Cumulative incidence ,Clinical significance ,Bone marrow ,Time point ,business - Abstract
Next-generation sequencing (NGS) has been applied to measurable/minimal residual disease (MRD) monitoring after induction chemotherapy in patients with acute myeloid leukemia (AML), but the optimal time point for the test remains unclear. In this study, we aimed to investigate the clinical significance of NGS MRD at 2 different time points. We performed targeted NGS of 54 genes in bone marrow cells serially obtained at diagnosis, first complete remission (first time point), and after the first consolidation chemotherapy (second time point) from 335 de novo AML patients. Excluding DNMT3A, TET2, and ASXL1 mutations, which are commonly present in individuals with clonal hematopoiesis of indeterminate potential, MRD could be detected in 46.4% of patients at the first time point (MRD1st), and 28.9% at the second time point (MRD2nd). The patients with detectable NGS MRD at either time point had a significantly higher cumulative incidence of relapse and shorter relapse-free survival and overall survival. In multivariate analysis, MRD1st and MRD2nd were both independent poor prognostic factors. However, the patients with positive MRD1st but negative MRD2nd had a similar good prognosis as those with negative MRD at both time points. The incorporation of multiparameter flow cytometry and NGS MRD revealed that the presence of NGS MRD predicted poorer prognosis among the patients without detectable MRD by multiparameter flow cytometry at the second time point but not the first time point. In conclusion, the presence of NGS MRD, especially after the first consolidation therapy, can help predict the clinical outcome of AML patients.
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- 2021
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5. Effect of Mutation Allele Frequency on the Risk Stratification of Myelodysplastic Syndrome Patients
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Wan‐Hsuan Lee, Chien‐Chin Lin, Cheng‐Hong Tsai, Mei‐Hsuan Tseng, Yuan‐Yeh Kuo, Ming‐Chih Liu, Jih‐Luh Tang, Hsun‐I Sun, Yi‐Kuang Chuang, Wen‐Chien Chou, Hsin‐An Hou, and Hwei‐Fang Tien
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Gene Frequency ,Myelodysplastic Syndromes ,Mutation ,Immunology ,Humans ,Cell Biology ,Hematology ,Splicing Factor U2AF ,Prognosis ,Risk Assessment ,Biochemistry - Abstract
Myelodysplastic syndrome (MDS) is a heterogeneous group of clonal myeloid malignancies. Though several recurrent mutations are closely correlated with clinical outcomes, data concerning the association between mutation variant allele frequencies (VAF) and prognosis are limited. In this study, we performed comprehensive VAF analyses of relevant myeloid-malignancy related mutations in 698 MDS patients and correlated the results with their prognosis. Mutation VAF in DNMT3A, TET2, ASXL1, EZH2, SETBP1, BCOR, SFSF2, ZRSR2, and TP53 mutations correlated with outcomes. In multivariable analysis, DNMT3A and ZRSR2 mutations with high VAF and mutant IDH2, CBL, U2AF1, and TP53 were independent poor prognostic factors for overall survival. A substantial portion of patients in each revised International Prognostic Scoring System (IPSS-R) risk group could be adjusted to different prognostic groups based on the integrated VAF and mutational profiles. Patients with these unfavorable mutations in each IPSS-R risk subgroup had survivals worse than other patients of the same risk but similar to those in the next higher-risk subgroup. Furthermore, patients harboring U2AF1 mutation might benefit from hypomethylating agents. This study demonstrated the critical role of VAF of mutations for risk stratification in MDS patients and may be incorporated in novel scoring systems.
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- 2022
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6. A 4-gene leukemic stem cell score can independently predict the prognosis of myelodysplastic syndrome patients
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Hwei-Fang Tien, Chia-Lang Hsu, Chien-Chin Lin, Yu-Hung Wang, Chi-Yuan Yao, Wen-Chien Chou, Cheng-Hong Tsai, and Hsin-An Hou
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Oncology ,medicine.medical_specialty ,Subgroup analysis ,LAPTM4B ,Risk Factors ,hemic and lymphatic diseases ,Internal medicine ,medicine ,Humans ,Risk factor ,Oncogene Proteins ,Myeloid Neoplasia ,business.industry ,Stem Cells ,Membrane Proteins ,Myeloid leukemia ,Hematology ,Prognosis ,medicine.disease ,Leukemia, Myeloid, Acute ,Leukemia ,Haematopoiesis ,International Prognostic Scoring System ,Myelodysplastic Syndromes ,Stem cell ,business - Abstract
Myelodysplastic syndrome (MDS) comprised a heterogeneous group of diseases. The prognosis of patients varies even in the same risk groups. Searching for novel prognostic markers is warranted. Leukemic stem cells (LSCs) are responsible for chemoresistance and relapse in leukemia. Recently, expressions of 17 genes related to stemness of LSCs were found to be associated with prognosis in acute myeloid leukemia patients. However, the clinical impact of LSC genes expressions in MDS, a disorder arising from hematopoietic stem cells, remains unclear. We analyzed expression profile of the 17 stemness-related genes in primary MDS patients and identified expression of 4 genes (LAPTM4B, NGFRAP1, EMP1, and CPXM1) were significantly correlated with overall survival (OS). We constructed an LSC4 scoring system based on the weighted sums of the expression of 4 genes and explored its clinical implications in MDS patients. Higher LSC4 scores were associated with higher revised International Prognostic Scoring System (IPSS-R) scores, complex cytogenetics, and mutations in RUNX1, ASXL1, and TP53. High-score patients had significantly shorter OS and leukemia-free survival (LFS), which was also confirmed in 2 independent validation cohorts. Subgroup analysis revealed the prognostic significance of LSC4 scores for OS remained valid across IPSS-R lower- and higher-risk groups. Furthermore, higher LSC4 score was an independent adverse risk factor for OS and LFS in multivariate analysis. In summary, LSC4 score can independently predict prognosis in MDS patients irrespective of IPSS-R risks and may be used to guide the treatment of MDS patients, especially lower-risk group in whom usually only supportive treatment is given.
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- 2020
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7. Optic neuropathy after chimeric antigen receptor T-cell therapy
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Ching-Wen Huang, Chao-Wen Lin, and Cheng-Hong Tsai
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Optic neuropathy ,Receptors, Chimeric Antigen ,business.industry ,Optic Nerve Diseases ,medicine ,Cancer research ,Cell- and Tissue-Based Therapy ,Humans ,Chimeric Antigen Receptor T-Cell Therapy ,Optic Nerve ,General Medicine ,medicine.disease ,business - Published
- 2021
8. Adoptive donor immunity protects against resolved hepatitis B virus reactivation after allogeneic haematopoietic stem cell transplantation in the world's largest retrospective cohort study
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Wen-Chien Chou, Chien-Hung Chen, Jih-Luh Tang, Yao-Chang Chen, Ming Yao, Chien-Ting Lin, Cheng-Hong Tsai, Hsin-An Hou, Jia-Hau Liu, Hwei-Fang Tien, Shang-Ju Wu, Bor-Sheng Ko, Shang-Yi Huang, Chi-Cheng Li, and Xiu-Wen Liao
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Adult ,Male ,Hepatitis B virus ,HBsAg ,Adolescent ,Graft vs Host Disease ,Adaptive Immunity ,medicine.disease_cause ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Transplantation, Homologous ,Cumulative incidence ,Retrospective Studies ,Hepatitis ,Donor selection ,business.industry ,Hematopoietic Stem Cell Transplantation ,virus diseases ,Retrospective cohort study ,Hematology ,Middle Aged ,Hepatitis B ,medicine.disease ,Tissue Donors ,digestive system diseases ,Transplantation ,Adoptive immunity ,Seroconversion ,030220 oncology & carcinogenesis ,Immunology ,Female ,Virus Activation ,business ,030215 immunology - Abstract
Reactivation of hepatitis B virus (HBV) by reverse seroconversion (HBV-RS) after allogeneic haematopoietic stem cell transplantation (allo-HSCT) can occur in patients with resolved HBV infection (rHBV, defined as negative HBV surface antigen [HBsAg] and positive HBV core antibody), and may cause fatal hepatitis. To explore the risk factors, we retrospectively identified 817 consecutive patients who underwent allo-HSCT from 2005 to 2016 in this largest single centre cohort from National Taiwan Univerisity Hospital. Transplants using donors or recipients positive for HBsAg or HBV DNA were excluded, leaving 445 rHBV patients for analysis. The 3- and 5-year cumulative incidence of HBV-RS after allo-HSCT was 8·7% and 10·5%, respectively, at a median 16 months after allo-HSCT. All had concurrent HBV reactivation. HBV flares developed in 19% of HBV-RS cases, but none experienced hepatic failure. Neither did it impact non-relapse mortality or overall survival. Multivariate analysis revealed that patients with donor lacking hepatitis B surface antibody and extensive chronic graft-versus-host disease (cGVHD) have the highest risk for HBV-RS, with 5-year incidence of 24·2%. In conclusion, adoptive immunity transfer from the donor seems to have protective effects against HBV-RS, which may alter future donor selection algorithms, and combined with extensive cGVHD provides a good target for risk-adaptive HBV prophylaxis.
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- 2019
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9. Busulfan-containing conditioning regimens in allogeneic hematopoietic stem cell transplantation for acute lymphoblastic leukemia: A Taiwan observational study
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Feng-Ming Tien, Xiu-Wen Liao, Jih-Luh Tang, Ming Yao, Huai-Hsuan Huang, Cheng-Hong Tsai, Jia-Hau Liu, Bor-Sheng Ko, and Yu-Hung Wang
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Adult ,Cancer Research ,medicine.medical_specialty ,Allogeneic transplantation ,Cyclophosphamide ,medicine.medical_treatment ,Taiwan ,Graft vs Host Disease ,Hematopoietic stem cell transplantation ,law.invention ,Randomized controlled trial ,law ,Internal medicine ,Medicine ,Humans ,Transplantation, Homologous ,Prospective Studies ,Busulfan ,Retrospective Studies ,business.industry ,Hematopoietic Stem Cell Transplantation ,Total body irradiation ,Precursor Cell Lymphoblastic Leukemia-Lymphoma ,Transplantation ,Regimen ,Oncology ,business ,medicine.drug - Abstract
Background Allogeneic stem cell transplantation (allo-HSCT) is the ultimate cure for acute lymphoblastic leukemia (ALL). Aim This study was performed to compare the outcomes of ALL patients receiving busulfan (Bu) with cyclophosphamide (Cy)-based or total body irradiation (TBI)-based regimen in a Chinese population. Methods We enrolled 224 adult patients with ALL who received allo-HSCT at National Taiwan University Hospital between 1997 and 2016. Results The median age at transplantation was 33 years. Before allo-HSCT, 75.9% of patients attained first or late complete remission. A total of 141 patients (62.9%) received Bu/Cy-based conditioning, either myeloablative (MA) or reduced-intensity stem cell transplantation (RIST), and 83 patients received a TBI-based regimen (MA-TBI). Patients receiving the MA-Bu regimen had longer relapse-free survival (RFS) than those receiving the MA-TBI regimen (median, 24.1 vs. 6.7 months, p = .044). There was no difference in overall survival (OS, MA-Bu vs. MA-TBI vs. RIST-Bu: 39.4 vs. 28.2 vs. 13.1 months, p = .276), treatment-related mortality (TRM), or incidences of grade 3-4 acute graft-versus-host disease (GvHD). Among patients receiving identical GvHD prophylactic regimens, there was no difference between MA-Bu and MA-TBI groups regarding the incidence of grade 3-4 acute GvHD, grade 2-4, and all-grade chronic GvHD. In subgroup analysis, patients receiving oral busulfan had comparable RFS and OS to the intravenous busulfan group (p = .436 and p = .236, respectively), but a higher TRM (25% vs. 9.8%, p = .016). In the multivariable analysis, disease status before allo-HSCT was the only risk factor impacting RFS and OS. Conclusion In summary, patients receiving Bu/Cy-based or TBI-based regimens as conditioning had similar results in terms of OS, TRM, and acute GvHD, whereas the use of myeloablative Bu/Cy resulted in a better RFS. A Bu-based regimen could be an alternative conditioning choice for patients who are ineligible to receive TBI. Prospective and randomized controlled trials are warranted to validate the long-term outcomes.
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- 2021
10. A CIBERSORTx-based immune cell scoring system could independently predict the prognosis of patients with myelodysplastic syndromes
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Cheng-Hong Tsai, Chia-Lang Hsu, Yen-Ling Peng, Chein-Jun Kao, Chi-Yuan Yao, Yu-Hung Wang, Hsin-An Hou, Hwei-Fang Tien, Mei-Hsuan Tseng, Yuan-Yeh Kuo, Chien-Chin Lin, and Wen-Chien Chou
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Oncology ,medicine.medical_specialty ,NPM1 ,Cell ,medicine.disease_cause ,Immune system ,Bone Marrow ,Internal medicine ,medicine ,Tumor Microenvironment ,Humans ,Leukemia ,Myeloid Neoplasia ,business.industry ,Myelodysplastic syndromes ,Hematology ,Immune dysregulation ,medicine.disease ,Prognosis ,medicine.anatomical_structure ,International Prognostic Scoring System ,Myelodysplastic Syndromes ,Cytogenetic Analysis ,Bone marrow ,Stem cell ,business ,Nucleophosmin - Abstract
Key Points CIBERSORTx analytical approach reveals M0, M2, and eosinophil fractions in the BM to be the most relevant prognostic factors in patients with MDS.High-risk immune cell scores correlate with NF-κB signaling, oxidative stress, and leukemic stem cell signature pathways., Visual Abstract, Aside from cell intrinsic factors such as genetic alterations, immune dysregulation in the bone marrow (BM) microenvironment plays a role in the development and progression of myelodysplastic syndromes (MDS). However, the prognostic implications of various immune cells in patients with MDS remain unclear. We adopted CIBERSORTx to estimate the relative fractions of 22 subtypes of immune cells in the BM of 316 patients with MDS and correlated the results with clinical outcomes. A lower fraction of unpolarized M0 macrophages and higher fractions of M2 macrophages and eosinophils were significantly associated with inferior survival. An immune cell scoring system (ICSS) was constructed based on the proportion of these 3 immune cells in the BM. The ICSS high-risk patients had higher BM blast counts, higher frequencies of poor-risk cytogenetics, and more NPM1, TP53, and WT1 mutations than intermediate- and low-risk patients. The ICSS could stratify patients with MDS into 3 risk groups with distinct leukemia-free survival and overall survival among the total cohort and in the subgroups of patients with lower and higher disease risk based on the revised International Prognostic Scoring System (IPSS-R). The prognostic significance of ICSS was also validated in another independent cohort. Multivariable analysis revealed that ICSS independently predicted prognosis, regardless of age, IPSS-R, and mutation status. Bioinformatic analysis demonstrated a significant correlation between high-risk ICSS and nuclear factor κB signaling, oxidative stress, and leukemic stem cell signature pathways. Further studies investigating the mechanistic insight into the crosstalk between stem cells and immune cells are warranted.
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- 2021
11. ASXL1 mutation confers poor prognosis in primary myelofibrosis patients with low JAK2V617F allele burden but not in those with high allele burden
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Yuan-Yeh Kuo, Ming Yao, Yu-Hung Wang, Fen-Ming Tien, Hwei-Fang Tien, Ko-Ping Chang, Yun-Chu Lin, Chung-Wu Lin, Jih-Luh Tang, Sze-Hwei Lee, Tai-Chung Huang, Hsin-An Hou, Cheng-Hong Tsai, Chien-Chin Lin, Wen-Chien Chou, and Shan-Ju Wu
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Oncology ,Male ,medicine.medical_specialty ,Poor prognosis ,Mutation, Missense ,Myeloproliferative disease ,lcsh:RC254-282 ,Disease-Free Survival ,Internal medicine ,Correspondence ,medicine ,Humans ,Allele ,Myelofibrosis ,Cancer genetics ,Alleles ,Aged ,Retrospective Studies ,business.industry ,Hematology ,Janus Kinase 2 ,Middle Aged ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Repressor Proteins ,Survival Rate ,Amino Acid Substitution ,Primary Myelofibrosis ,Mutation (genetic algorithm) ,Female ,business - Published
- 2020
12. Distinct clinical and biological characteristics of acute myeloid leukemia with higher expression of long noncoding RNA KIAA0125
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Hsin-An Hou, Hwei-Fang Tien, Chi-Yuan Yao, Sze-Hwei Lee, Chia-Lang Hsu, Wen-Chien Chou, Cheng-Hong Tsai, Chien-Chin Lin, Sheng-Yu Hung, and Yu-Hung Wang
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,Leukemic stem cell signatures ,Biology ,medicine.disease_cause ,Disease-Free Survival ,chemistry.chemical_compound ,Internal medicine ,Gene expression ,medicine ,Humans ,Clinical significance ,RNA, Neoplasm ,Aged ,Aged, 80 and over ,Mutation ,Hematology ,Acute myeloid leukemia ,Gene Expression Regulation, Leukemic ,Myeloid leukemia ,General Medicine ,Middle Aged ,KIAA0125 ,Survival Rate ,Haematopoiesis ,Leukemia, Myeloid, Acute ,medicine.anatomical_structure ,RUNX1 ,chemistry ,Long non-coding RNA ,Cancer research ,Female ,RNA, Long Noncoding ,Original Article ,Bone marrow ,Chemoresistance - Abstract
Expression of long non-coding RNA KIAA0125 has been incorporated in various gene expression signatures for prognostic prediction in acute myeloid leukemia (AML) patients, yet its functions and clinical significance remain unclear. This study aimed to investigate the clinical and biological characteristics of AML bearing different levels of KIAA0125. We profiled KIAA0125 expression levels in bone marrow cells from 347 de novo AML patients and found higher KIAA0125 expression was closely associated with RUNX1 mutation, but inversely correlated with t(8;21) and t(15;17) karyotypes. Among the 227 patients who received standard chemotherapy, those with higher KIAA0125 expression had a lower complete remission rate, shorter overall survival (OS) and disease-free survival (DFS) than those with lower expression. The prognostic significance was validated in both TCGA and GSE12417 cohorts. Subgroup analyses showed that higher KIAA0125 expression also predicted shorter DFS and OS in patients with normal karyotype or non-M3 AML. In multivariable analysis, higher KIAA0125 expression remained an adverse risk factor independent of age, WBC counts, karyotypes, and mutation patterns. Bioinformatics analyses revealed that higher KIAA0125 expression was associated with hematopoietic and leukemic stem cell signatures and ATP-binding cassette transporters, two predisposing factors for chemoresistance.
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- 2020
13. The expression levels of long non-coding RNA KIAA0125 are associated with distinct clinical and biological features in myelodysplastic syndromes
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Hsin-An Hou, Cheng-Hong Tsai, Sheng-Yu Hung, Hwei-Fang Tien, Yu-Hung Wang, Chien-Chin Lin, Chia-Lang Hsu, Wen-Chien Chou, and Chi-Yuan Yao
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Oncology ,Neuroblastoma RAS viral oncogene homolog ,Adult ,Male ,medicine.medical_specialty ,Disease ,Biology ,Lower risk ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Internal medicine ,Gene expression ,medicine ,Humans ,Gene ,Aged ,Aged, 80 and over ,Myelodysplastic syndromes ,Hematology ,Middle Aged ,medicine.disease ,Prognosis ,Long non-coding RNA ,Gene Expression Regulation, Neoplastic ,International Prognostic Scoring System ,030220 oncology & carcinogenesis ,Myelodysplastic Syndromes ,Female ,RNA, Long Noncoding ,Transcriptome ,030215 immunology - Abstract
Long non-coding RNAs (lncRNAs) have important functions in cancer biology. Among them, lncRNA KIAA0125 is one of the genes proposed to play a critical role in leukaemia stem cell (LSC). In this study, we aimed to investigate the clinical relevance of the expression levels of lncRNA KIAA0125 in myelodysplastic syndromes (MDS), a disease with highly heterogeneous clinical and biological features. Using RNA arrays, we measured the expression of KIAA0125 in 176 primary MDS patients. We found that higher KIAA0125 expression was associated with higher risk MDS, based on the revised International Prognostic Scoring System (IPSS-R), mutations in ASXL1 and NRAS, and predicted poorer overall survival (OS) and leukaemia-free survival (LFS). Multivariate analysis revealed that higher KIAA0125 expression was an independent, unfavourable prognostic factor for OS and LFS, irrespective of IPSS-R and mutation status. Further global gene expression profile analysis suggested a close association of higher KIAA0125 expressions with LSC signatures. The expression of KIAA0125 may be a potential biomarker to guide the treatment choice in MDS patients, especially those with lower risk subtypes, in whom palliative treatment is usually used.
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- 2020
14. A Child with Juvenile Myelomonocytic Leukemia Possessing a Concurrent Germline CBL Mutation and a NF1 Variant of Uncertain Significance: A Rare Case with a Common Problem in the Era of High-throughput Sequencing
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Shu-Wei Chou, Cheng-Hong Tsai, Meng-Yao Lu, Wei-Hao Wang, Shiann-Tarng Jou, and Shih-Chung Wang
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CBL ,Neuroblastoma RAS viral oncogene homolog ,Somatic cell ,medicine.medical_treatment ,Spontaneous remission ,Hematopoietic stem cell transplantation ,DNA sequencing ,Germline ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Child ,lcsh:R5-920 ,Juvenile myelomonocytic leukemia ,business.industry ,Hematopoietic Stem Cell Transplantation ,High-Throughput Nucleotide Sequencing ,General Medicine ,medicine.disease ,Germ Cells ,Leukemia, Myelomonocytic, Juvenile ,NF1 ,030220 oncology & carcinogenesis ,Mutation ,Mutation (genetic algorithm) ,Cancer research ,030211 gastroenterology & hepatology ,Variant of uncertain significance ,lcsh:Medicine (General) ,business - Abstract
Genetic changes in juvenile myelomonocytic leukemia (JMML) determine distinct subtypes, treatments, and outcomes. JMML with germline CBL mutation and somatic NRAS mutation possibly achieves spontaneous remission, but hematopoietic stem cell transplantation is indicated for other subtypes of JMML. We hereby report a child with JMML harboring a germline CBL mutation (c.1111T>C) and an NF1 variant (c.3352A>G) concurrently. After evaluation, we considered that the NF1 variant was not the major contributor. After one year of observation, this case had no signs of disease progression. This case highlights the importance of combining available evidence and clinical findings in caring for patients with unusual genomic variations.
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- 2020
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15. Clinically validated machine learning algorithm for detecting residual diseases with multicolor flow cytometry analysis in acute myeloid leukemia and myelodysplastic syndrome
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Cheng-Hong Tsai, Yu-Fen Wang, Pei-Fang Weng, Shang-Yi Huang, Shang-Ju Wu, Huai-Hsuan Huang, Chien-Ting Lin, Chi-Chun Lee, Jia-Hau Liu, Szu-Chun Hsu, Ming Yao, Hwei-Fang Tien, Bor-Sheng Ko, Jih-Luh Tang, Tai-Chung Huang, Wen-Chien Chou, Jeng-Lin Li, Hsin-An Hou, and Chi-Cheng Li
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Male ,0301 basic medicine ,Artificial intelligence ,Neoplasm, Residual ,Research paper ,Computer science ,lcsh:Medicine ,Machine learning ,computer.software_genre ,Residual ,Disease-Free Survival ,General Biochemistry, Genetics and Molecular Biology ,Machine Learning ,03 medical and health sciences ,Predictive Value of Tests ,Humans ,Clinical significance ,lcsh:R5-920 ,Acute myeloid leukemia ,Training set ,business.industry ,Minimal residual disease ,lcsh:R ,Myeloid leukemia ,Multicolor flow cytometry ,General Medicine ,Flow Cytometry ,Mixture model ,Survival Rate ,Support vector machine ,Leukemia, Myeloid, Acute ,030104 developmental biology ,Myelodysplastic Syndromes ,Female ,Christian ministry ,lcsh:Medicine (General) ,business ,Myelodysplastic syndrome ,computer ,Algorithm - Abstract
Background: Multicolor flow cytometry (MFC) analysis is widely used to identify minimal residual disease (MRD) after treatment for acute myeloid leukemia (AML) and myelodysplastic syndrome (MDS). However, current manual interpretation suffers from drawbacks of time consuming and interpreter idiosyncrasy. Artificial intelligence (AI), with the expertise in assisting repetitive or complex analysis, represents a potential solution for these drawbacks. Methods: From 2009 to 2016, 5333 MFC data from 1742 AML or MDS patients were collected. The 287 MFC data at post-induction were selected as the outcome set for clinical outcome validation. The rest were 4:1 randomized into the training set (n = 4039) and the validation set (n = 1007). AI algorithm learned a multi-dimensional MFC phenotype from the training set and input it to support vector machine (SVM) classifier after Gaussian mixture model (GMM) modeling, and the performance was evaluated in The validation set. Findings: Promising accuracies (84·6% to 92·4%) and AUCs (0·921–0·950) were achieved by the developed algorithms. Interestingly, the algorithm from even one testing tube achieved similar performance. The clinical significance was validated in the outcome set, and normal MFC interpreted by the AI predicted better progression-free survival (10·9 vs 4·9 months, p
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- 2018
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16. Mayo Alliance Prognostic Model for Myelodysplastic Syndromes: Integration of Genetic and Clinical Information
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Michelle A. Elliott, Chien-Chin Lin, Mark R. Litzow, Hsin-An Hou, Ayalew Tefferi, Mrinal M. Patnaik, Rhett P. Ketterling, Rong He, Kebede H. Begna, David S. Viswanatha, Curtis A. Hanson, Mythri Mudireddy, Animesh Pardanani, Hwei-Fang Tien, Naseema Gangat, C. Christopher Hook, Aref Al-Kali, Alexandra P. Wolanskyj, Jih-Luh Tang, Cheng-Hong Tsai, Darci Zblewski, William J. Hogan, Terra L. Lasho, Wen-Chien Chou, and Christy Finke
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Male ,medicine.medical_specialty ,Multivariate analysis ,Risk Assessment ,Hemoglobins ,03 medical and health sciences ,Sex Factors ,0302 clinical medicine ,Risk Factors ,Internal medicine ,Humans ,Medicine ,Aged ,Proportional Hazards Models ,Receiver operating characteristic ,Platelet Count ,business.industry ,Proportional hazards model ,Myelodysplastic syndromes ,Hazard ratio ,Age Factors ,Area under the curve ,Reproducibility of Results ,Bone Marrow Examination ,General Medicine ,Phosphoproteins ,Prognosis ,medicine.disease ,Repressor Proteins ,International Prognostic Scoring System ,Karyotyping ,Myelodysplastic Syndromes ,030220 oncology & carcinogenesis ,Core Binding Factor Alpha 2 Subunit ,Mutation ,Cohort ,Female ,RNA Splicing Factors ,business ,030215 immunology - Abstract
Objective To develop a new risk model for primary myelodysplastic syndromes (MDS) that integrates information on mutations, karyotype, and clinical variables. Patients and Methods Patients with World Health Organization–defined primary MDS seen at Mayo Clinic (MC) from December 28, 1994, through December 19, 2017, constituted the core study group. The National Taiwan University Hospital (NTUH) provided the validation cohort. Model performance, compared with the revised International Prognostic Scoring System, was assessed by Akaike information criterion and area under the curve estimates. Results The study group consisted of 685 molecularly annotated patients from MC (357) and NTUH (328). Multivariate analysis of the MC cohort identified monosomal karyotype (hazard ratio [HR], 5.2; 95% CI, 3.1-8.6), "non-MK abnormalities other than single/double del(5q)" (HR, 1.8; 95% CI, 1.3-2.6), RUNX1 (HR, 2.0; 95% CI, 1.2-3.1) and ASXL1 (HR, 1.7; 95% CI, 1.2-2.3) mutations, absence of SF3B1 mutations (HR, 1.6; 95% CI, 1.1-2.4), age greater than 70 years (HR, 2.2; 95% CI, 1.6-3.1), hemoglobin level less than 8 g/dL in women or less than 9 g/dL in men (HR, 2.3; 95% CI, 1.7-3.1), platelet count less than 75 × 109/L (HR, 1.5; 95% CI, 1.1-2.1), and 10% or more bone marrow blasts (HR, 1.7; 95% CI, 1.1-2.8) as predictors of inferior overall survival. Based on HR-weighted risk scores, a 4-tiered Mayo alliance prognostic model for MDS was devised: low (89 patients), intermediate-1 (104), intermediate-2 (95), and high (69); respective median survivals (5-year overall survival rates) were 85 (73%), 42 (34%), 22 (7%), and 9 months (0%). The Mayo alliance model was subsequently validated by using the external NTUH cohort and, compared with the revised International Prognostic Scoring System, displayed favorable Akaike information criterion (1865 vs 1943) and area under the curve (0.87 vs 0.76) values. Conclusion We propose a simple and contemporary risk model for MDS that is based on a limited set of genetic and clinical variables.
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- 2018
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17. The prognostic significance of global aberrant alternative splicing in patients with myelodysplastic syndrome
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Chien-Chin Lin, Cheng-Hong Tsai, Chein-Jun Kao, Hsin-An Hou, Hwei-Fang Tien, Mei-Hsuan Tseng, Yu-Chiao Chiu, Wen-Chien Chou, and Yi-Tsung Yang
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0301 basic medicine ,Oncology ,Male ,medicine.medical_specialty ,Kaplan-Meier Estimate ,Protein degradation ,lcsh:RC254-282 ,Article ,Transcriptome ,03 medical and health sciences ,Internal medicine ,Medicine ,Humans ,Prospective cohort study ,Aged ,Proportional Hazards Models ,Aged, 80 and over ,business.industry ,Proportional hazards model ,Gene Expression Profiling ,Alternative splicing ,EZH2 ,Computational Biology ,Reproducibility of Results ,Hematology ,Middle Aged ,Prognosis ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Gene expression profiling ,Alternative Splicing ,030104 developmental biology ,International Prognostic Scoring System ,Myelodysplastic Syndromes ,Female ,business ,Biomarkers - Abstract
Aberrant alternative splicing (AS) is a hallmark of cancer development. However, there are limited data regarding its clinical implications in myelodysplastic syndrome (MDS). In this study, we performed an in-depth analysis of global AS in 176 primary MDS patients with 20 normal marrow transplant donors as reference. We found that 26.9% of the expressed genes genome-wide were aberrantly spliced in MDS patients compared with normal donors. These aberrant AS genes were related to pathways involved in cell proliferation, cell adhesion and protein degradation. A higher degree of global aberrant AS was associated with male gender and U2AF1 mutation, and predicted shorter overall survival and time to leukemic change. Moreover, it was an independent unfavorable prognostic factor irrespective of age, revised international prognostic scoring system (IPSS-R) risk, and mutations in SRSF2, ZRSR2, ASXL1, TP53, and EZH2. With LASSO-Cox regression method, we constructed a simple prognosis prediction model composed of 13 aberrant AS genes, and demonstrated that it could well stratify MDS patients into distinct risk groups. To our knowledge, this is the first report demonstrating significant prognostic impacts of aberrant splicing on MDS patients. Further prospective studies in larger cohorts are needed to confirm our observations.
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- 2018
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18. GATA2 zinc finger 1 mutations are associated with distinct clinico-biological features and outcomes different from GATA2 zinc finger 2 mutations in adult acute myeloid leukemia
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Hsin-An Hou, Shang-Ju Wu, Shang-Yi Huang, Feng-Ming Tien, Xiu-Wen Liao, Ming Yao, Yuan-Yeh Kuo, Cheng-Hong Tsai, Chia-Wen Liu, Mei-Hsuan Tseng, Yu-Chiao Chiu, Wen-Chien Chou, Chien-Ting Lin, Hwei-Fang Tien, Chien-Yuan Chen, Ming-Chih Liu, Yen-Ling Peng, Liang-In Lin, Szu-Chun Hsu, Bor-Sheng Ko, and Jih-Luh Tang
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0301 basic medicine ,Male ,Myeloid ,DNA Mutational Analysis ,Kaplan-Meier Estimate ,medicine.disease_cause ,0302 clinical medicine ,CEBPA ,Antineoplastic Combined Chemotherapy Protocols ,Zinc finger ,Aged, 80 and over ,Mutation ,GATA2 ,Zinc Fingers ,Hematology ,Exons ,Middle Aged ,Prognosis ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,GATA2 Transcription Factor ,Leukemia ,Leukemia, Myeloid, Acute ,medicine.anatomical_structure ,Treatment Outcome ,Oncology ,030220 oncology & carcinogenesis ,Female ,Nucleophosmin ,Adult ,NPM1 ,Karyotype ,Biology ,Polymorphism, Single Nucleotide ,lcsh:RC254-282 ,Article ,03 medical and health sciences ,Young Adult ,medicine ,Biomarkers, Tumor ,Humans ,Protein Interaction Domains and Motifs ,Aged ,Neoplasm Staging ,Computational Biology ,Adult Acute Myeloid Leukemia ,Molecular Sequence Annotation ,medicine.disease ,030104 developmental biology ,Cancer research ,Neoplasm Grading - Abstract
Mutations of the GATA binding protein 2 (GATA2) gene in myeloid malignancies usually cluster in the zinc finger 1 (ZF1) and the ZF2 domains. Mutations in different locations of GATA2 may have distinct impact on clinico-biological features and outcomes in AML patients, but little is known in this aspect. In this study, we explored GATA2 mutations in 693 de novo non-M3 AML patients and identified 44 GATA2 mutations in 43 (6.2%) patients, including 31 in ZF1, 10 in ZF2, and three outside the two domains. Different from GATA2 ZF2 mutations, ZF1 mutations were closely associated with French-American-British (FAB) M1 subtype, CEBPA double mutations (CEBPAdouble-mut), but inversely correlated with FAB M4 subtype, NPM1 mutations, and FLT3-ITD. ZF1-mutated AML patients had a significantly longer overall survival (OS) than GATA2-wild patients and ZF2-mutated patients in total cohort as well as in those with intermediate-risk cytogenetics and normal karyotype. ZF1 mutations also predicted better disease-free survival and a trend of better OS in CEBPAdouble-mut patients. Sequential analysis showed GATA2 mutations could be acquired at relapse. In conclusion, GATA2 ZF1 mutations are associated with distinct clinico-biological features and predict better prognosis, different from ZF2 mutations, in AML patients.
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- 2018
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19. Hyperleukocytosis is associated with distinct genetic alterations and is an independent poor-risk factor inde novoacute myeloid leukemia patients
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Ming Yao, Shang-Yi Huang, Feng-Ming Tien, Yuan-Yeh Kuo, Chi-Cheng Li, Szu-Chun Hsu, Jih-Luh Tang, Bor-Sheng Ko, Hwei-Fang Tien, Chien-Ting Lin, Hsin-An Hou, Cheng-Hong Tsai, Mei-Hsuan Tseng, Chien-Yuan Chen, Ming-Chih Liu, Woei Tsay, Wen-Chien Chou, Liang-In Lin, Shang-Ju Wu, and Chia-Wen Liu
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Male ,Oncology ,Leukocytosis ,medicine.medical_treatment ,Hematopoietic stem cell transplantation ,medicine.disease_cause ,DNA Methyltransferase 3A ,Cohort Studies ,0302 clinical medicine ,Risk Factors ,hemic and lymphatic diseases ,CEBPA ,DNA (Cytosine-5-)-Methyltransferases ,Aged, 80 and over ,Mutation ,Gene Expression Regulation, Leukemic ,Remission Induction ,Hematopoietic Stem Cell Transplantation ,Nuclear Proteins ,Myeloid leukemia ,Hematology ,General Medicine ,Middle Aged ,DNA-Binding Proteins ,Leukemia, Myeloid, Acute ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Female ,Nucleophosmin ,Adult ,medicine.medical_specialty ,NPM1 ,Adolescent ,Antineoplastic Agents ,Dioxygenases ,03 medical and health sciences ,Proto-Oncogene Proteins ,Internal medicine ,White blood cell ,medicine ,Humans ,Transplantation, Homologous ,Aged ,business.industry ,Cytogenetics ,Survival Analysis ,Transplantation ,fms-Like Tyrosine Kinase 3 ,Karyotyping ,Multivariate Analysis ,CCAAT-Enhancer-Binding Proteins ,business ,030215 immunology - Abstract
OBJECTIVES Acute myeloid leukemia (AML) with hyperleukocytosis (HL) is intuitively thought as a unique group with dismal prognosis. However, comprehensive studies regarding the genetic landscape and clinical outcome in this group of patients are limited. METHODS A total of 693 newly diagnosed de novo non-M3 AML patients were consecutively enrolled. We compared relevant mutations in 20 genes between AML patients with or without HL and exposed their prognostic implications. RESULTS Hyperleukocytosis, defined as initial white blood cell counts above 50 000/μL, occurred in 28.9% of AML patients. HL patients had higher incidences of FLT3-ITD, NPM1, DNMT3A, CEBPA, and TET2 mutations. Multivariate analysis demonstrated that HL was an independent poor prognostic factor for overall survival and disease-free survival in total patients, those with intermediate-risk cytogenetics and normal karyotype irrespective of genetic alterations. Intriguingly, HL predicted poor survival in CEBPA double mutated, NPM1 + /FLT3-ITD- and NPM1-/FLT3-ITD- patients. Further, HL patients who received allogeneic hematopoietic stem cell transplantation (allo-HSCT) in first complete remission (CR) had a significantly longer overall survival and disease-free survival than those without allo-HSCT. CONCLUSIONS Hyperleukocytosis is an independent poor prognostic factor irrespective of cytogenetics and mutation status. Allo-HSCT in first CR seems to ameliorate the poor prognostic impact of HL.
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- 2018
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20. Dynamics of DNMT3A mutation and prognostic relevance in patients with primary myelodysplastic syndrome
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Szu-Chun Hsu, Bor-Sheng Ko, Shang-Ju Wu, Ming Yao, Chi-Cheng Li, Shang-Yi Huang, Yuan-Yeh Kuo, Cheng-Hong Tsai, Wen-Chien Chou, Hwei-Fang Tien, Chien-Ting Lin, Chien-Yuan Chen, Chia-Wen Liu, Jih-Luh Tang, Mei-Hsuan Tseng, Ming-Chih Liu, Ming-En Lin, and Hsin-An Hou
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Male ,0301 basic medicine ,Oncology ,medicine.medical_treatment ,lcsh:Medicine ,Disease ,Hematopoietic stem cell transplantation ,DNA Methyltransferase 3A ,0302 clinical medicine ,Medicine ,DNA (Cytosine-5-)-Methyltransferases ,Genetics (clinical) ,Aged, 80 and over ,Incidence (epidemiology) ,Myeloid leukemia ,Middle Aged ,Prognosis ,Leukemia ,030220 oncology & carcinogenesis ,Mutation (genetic algorithm) ,embryonic structures ,Disease Progression ,Paired samples ,Adult ,medicine.medical_specialty ,Adolescent ,lcsh:QH426-470 ,IDH2 ,Young Adult ,03 medical and health sciences ,Internal medicine ,Genetics ,Humans ,Molecular Biology ,Aged ,business.industry ,Research ,lcsh:R ,Sequence Analysis, DNA ,medicine.disease ,Survival Analysis ,Human genetics ,lcsh:Genetics ,030104 developmental biology ,Myelodysplastic Syndromes ,Mutation ,DNMT3A ,business ,Myelodysplastic syndrome ,Developmental Biology - Abstract
Background DNMT3A gene mutation has been associated with poor prognosis in acute myeloid leukemia, but its clinical implications in myelodysplastic syndrome (MDS) and dynamic changes during disease progression remain controversial. Results In this study, DNMT3A mutation was identified in 7.9% of 469 de novo MDS patients. DNMT3A-mutated patients had higher platelet counts at diagnosis, and patients with ring sideroblasts had the highest incidence of DNMT3A mutations, whereas those with multilineage dysplasia had the lowest incidence. Thirty-one (83.8%) of 37 DNMT3A-mutated patients had additional molecular abnormalities at diagnosis, and DNMT3A mutation was highly associated with mutations of IDH2 and SF3B1. Patients with DNMT3A mutations had a higher risk of leukemia transformation and shorter overall survival. Further, DNMT3A mutation was an independent poor prognostic factor irrespective of age, IPSS-R, and genetic alterations. The sequential study demonstrated that the original DNMT3A mutations were retained during follow-ups unless allogeneic hematopoietic stem cell transplantation was performed, while DNMT3A mutation was rarely acquired during disease progression. Conclusions DNMT3A mutation predicts unfavorable outcomes in MDS and was stable during disease evolutions. It may thus be a potential biomarker to predict prognosis and monitor the treatment response. Electronic supplementary material The online version of this article (10.1186/s13148-018-0476-1) contains supplementary material, which is available to authorized users.
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- 2018
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21. Prognostic impacts and dynamic changes of cohesin complex gene mutations in de novo acute myeloid leukemia
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Chien-Ting Lin, Chien-Yuan Chen, Szu-Chun Hsu, Bor-Sheng Ko, Yu-Chiao Chiu, Wen-Chien Chou, Cheng-Hong Tsai, Tzung-Yi Lin, Mei-Hsuan Tseng, Chieh-Yu Liu, Liang-In Lin, Hsin-An Hou, Ming Yao, Ming-Chih Liu, Chi-Cheng Li, Chia-Wen Liu, Shang-Ju Wu, Woei Tsay, Shang-Yi Huang, Eric Y. Chuang, Yuan-Yeh Kuo, Hwei-Fang Tien, Jih-Luh Tang, and Chien-Chin Lin
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Male ,0301 basic medicine ,Myeloid ,Cohesin complex ,Chromosomal Proteins, Non-Histone ,DNA Mutational Analysis ,Cell Cycle Proteins ,Kaplan-Meier Estimate ,Gene mutation ,Biology ,medicine.disease_cause ,lcsh:RC254-282 ,Disease-Free Survival ,03 medical and health sciences ,Correspondence ,medicine ,Humans ,Proportional Hazards Models ,Mutation ,De novo acute ,Myeloid leukemia ,Hematology ,Prognosis ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Leukemia, Myeloid, Acute ,Leukemia ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,Cancer research ,Female - Published
- 2017
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22. Cytogenetics and mutations could predict outcome in relapsed and refractory acute myeloid leukemia patients receiving BCL-2 inhibitor venetoclax
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Feng-Ming Tien, Ming Yao, Chieh-Lung Cheng, Jih-Luh Tang, Wen-Chien Chou, Chien-Ting Lin, Cheng-Hong Tsai, Yun-Chu Lin, Chien-Chin Lin, Yu-Wen Wang, Hwei-Fang Tien, Yu-Wen Chen, Hsing-Yu Lin, and Hsin-An Hou
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Oncology ,Adult ,Male ,medicine.medical_specialty ,NPM1 ,Disease-Free Survival ,03 medical and health sciences ,chemistry.chemical_compound ,Cytogenetics ,0302 clinical medicine ,Risk Factors ,hemic and lymphatic diseases ,Internal medicine ,medicine ,Humans ,Aged ,Febrile Neutropenia ,Aged, 80 and over ,Sulfonamides ,Hematology ,business.industry ,Venetoclax ,Myeloid leukemia ,General Medicine ,Middle Aged ,medicine.disease ,Bridged Bicyclo Compounds, Heterocyclic ,Tumor lysis syndrome ,Survival Rate ,Leukemia, Myeloid, Acute ,chemistry ,Proto-Oncogene Proteins c-bcl-2 ,030220 oncology & carcinogenesis ,B-cell leukemia ,Mutation ,Female ,business ,Nucleophosmin ,Febrile neutropenia ,030215 immunology - Abstract
Venetoclax, a selective B cell leukemia/lymphoma-2 (BCL2) inhibitor, has recently shown activity in relapsed or refractory (R/R) acute myeloid leukemia (AML). Effective biomarkers for identifying patients most likely to respond to venetoclax-based treatment are of clinical utility. In this study, we aimed to evaluate the efficacy and safety profiles of venetoclax-based therapy in a total 40 R/R AML patients and identify the potentially predictive factors for response. Overall response rate was 50%, including 9 (22.5%) complete response (CR) or CR with incomplete hematologic recovery of either neutrophil or platelet counts (CRi). Median time to best response was 1.4 months and the median overall survival (OS) was 6.6 months. Presence of intermediate-risk cytogenetics predicted better OS compared to unfavorable-risk cytogenetics. Patients harboring NPM1, RUNX1, or SRSF2 mutations seemed to have higher CR/CRi rates and median OS was significantly longer in RUNX1-mutated patients. On the contrary, patients with FLT3-ITD, TP53, or DNMT3A mutations did not reach any objective response and had worse OS. No laboratory or clinical tumor lysis syndrome was observed and the most common adverse events were prolonged cytopenias which resulted in 67.5% of febrile neutropenia. Patients with concurrent use of azole antifungals had similar incidence of cytopenias compared with those without azole antifungals. In summary, we demonstrate that venetoclax is an effective and well-tolerated salvage option for R/R AML patients. Survival benefits were particularly remarkable in patients with intermediate-risk cytogenetics or RUNX1 mutations. In contrast, TP53, NRAS, and DNMT3A mutations as well as FLT3-ITD conferred negative impact on survival.
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- 2019
23. Brentuximab vedotin as a salvage treatment for relapsed and refractory Hodgkin lymphoma patients in Taiwan
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Feng-Ming Tien, Chien-Ting Lin, Jia-Hau Liu, and Cheng-Hong Tsai
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Oncology ,Adult ,Male ,medicine.medical_specialty ,Adolescent ,Salvage treatment ,Taiwan ,Salvage therapy ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Antineoplastic Agents, Immunological ,Refractory ,Recurrence ,Internal medicine ,Refractory Hodgkin Lymphoma ,Medicine ,Humans ,Brentuximab vedotin ,Aged ,Aged, 80 and over ,Brentuximab Vedotin ,Salvage Therapy ,lcsh:R5-920 ,business.industry ,General Medicine ,Middle Aged ,University hospital ,Hodgkin Disease ,Progression-Free Survival ,Transplantation ,Survival Rate ,030220 oncology & carcinogenesis ,Retreatment ,Hodgkin lymphoma ,030211 gastroenterology & hepatology ,Female ,business ,lcsh:Medicine (General) ,medicine.drug - Abstract
Hodgkin lymphoma (HL) is a highly curable hematologic malignancy. Relapsed/refractory (R/R) HL is an important clinical challenge, despite advances in treatment. Brentuximab vedotin (BV) is highly effective in R/R HL in the western world. However, there are no real-world data on the use of BV in the Asian population. Our study aimed to evaluate the efficacy and safety of BV as salvage therapy in R/R HL patients in Taiwan. We recruited 20 R/R HL patients who received BV at National Taiwan University Hospital. BV was administered at 1.8 mg/kg once every 3 weeks. The median number of systemic treatment received before BV was three. The overall response rate was 73.7% with a complete remission rate of 21.1% in R/R HL. Overall survival was not reached and progression-free survival was 6.8 months. BV could strengthen disease control before transplantation and improve post-transplant outcomes, even among those heavily pretreated patients, without significant overlapping toxicities with prior therapies. Our data suggest that BV is well tolerated and effective in the treatment of Asian patients with R/R HL. BV may offer long-term disease control in selected patients. Keywords: Brentuximab vedotin, Hodgkin lymphoma, Relapse, Transplantation
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- 2019
24. Incorporation of long non-coding RNA expression profile in the 2017 ELN risk classification can improve prognostic prediction of acute myeloid leukemia patients
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Chiawen Liu, Ming Yao, Yen-Ling Peng, Hwei-Fang Tien, Chien-Chin Lin, Ming-Chih Liu, Chien-Yu Chen, Chi-Yuan Yao, Jih-Luh Tang, Yu-Chiao Chiu, Feng-Min Tien, Yuan-Yeh Kuo, Wen-Chien Chou, Liang-In Lin, Mei-Hsuan Tseng, Hsin-An Hou, and Cheng-Hong Tsai
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0301 basic medicine ,Oncology ,Adult ,Male ,medicine.medical_specialty ,Multivariate analysis ,Research paper ,Adolescent ,medicine.medical_treatment ,Hematopoietic stem cell transplantation ,Kaplan-Meier Estimate ,Prognostication ,Gene mutation ,Risk Assessment ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,European LeukemiaNet ,Young Adult ,0302 clinical medicine ,lncRNA ,AML ,Internal medicine ,medicine ,Humans ,Risk stratification ,Aged ,Proportional Hazards Models ,Aged, 80 and over ,Chromosome Aberrations ,business.industry ,Gene Expression Profiling ,Myeloid leukemia ,Hematopoietic stem cell ,General Medicine ,Middle Aged ,medicine.disease ,Prognosis ,Long non-coding RNA ,Leukemia ,Leukemia, Myeloid, Acute ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Mutation ,Female ,RNA, Long Noncoding ,Risk classification ,business ,Transcriptome - Abstract
Background: Expression of long non-coding RNAs (lncRNAs) has recently been recognized as a potential prognostic marker in acute myeloid leukemia (AML). However, it remains unclear whether incorporation of the lncRNAs expression in the 2017 European LeukemiaNet (ELN) risk classification can further improve the prognostic prediction. Methods: We enrolled 275 newly diagnosed non-M3 AML patients and randomly assigned them into the training (n=183) and validation cohorts (n=92). In the training cohort, we formulated a prognostic lncRNA scoring system composed of five lncRNAs with significant prognostic impact from the lncRNA expression profiling. Findings: Higher lncRNA scores were significantly associated with older age and adverse gene mutations. Further, the higher-score patients had shorter overall and disease-free survival than lower-score patients, which were also confirmed in both internal and external validation cohorts (TCGA database). The multivariate analyses revealed the lncRNA score was an independent prognosticator in AML, irrespective of the risk based on the 2017 ELN classification. Moreover, in the 2017 ELN intermediate-risk subgroup, lncRNA scoring system could well dichotomize the patients into two groups with distinct prognosis. Within the ELN intermediate-risk subgroup, we found that allogeneic hematopoietic stem cell transplantation could provide better outcome on patients with higher lncRNA scores. Through bioinformatics approach, we identified high lncRNA scores were correlated with leukemia/hematopoietic stem cell signatures. Interpretation: Incorporation of lncRNA scoring system in 2017 ELN classification can improve risk-stratification of AML patients and help clinical decision-making. Funding Statement: This work was supported Ministry of Science and Technology, and Ministry of Health and Welfare of Taiwan. Declaration of Interests: The authors declare no competing interests. Ethics Approval Statement: This study was approved by the Research Ethics Committee of the NTUH in accordance with the Declaration of Helsinki.
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- 2018
25. Concomitant
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Feng-Ming, Tien, Hsin-An, Hou, Jih-Luh, Tang, Yuan-Yeh, Kuo, Chien-Yuan, Chen, Cheng-Hong, Tsai, Ming, Yao, Chien-Ting, Lin, Chi-Cheng, Li, Shang-Yi, Huang, Bor-Sheng, Ko, Szu-Chun, Hsu, Shang-Ju, Wu, Jia-Hau, Liu, Sheng Chieh, Chou, Woei, Tsay, Mei-Hsuan, Tseng, Ming-Chih, Liu, Chia-Wen, Liu, Liang-In, Lin, Wen-Chien, Chou, and Hwei-Fang, Tien
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Adult ,Aged, 80 and over ,Male ,Adolescent ,Middle Aged ,Disease-Free Survival ,Survival Rate ,Leukemia, Myeloid, Acute ,Mutation ,CCAAT-Enhancer-Binding Proteins ,Humans ,Female ,WT1 Proteins ,Online Only Articles ,Aged - Published
- 2018
26. Incorporation of mutations in five genes in the revised International Prognostic Scoring System can improve risk stratification in the patients with myelodysplastic syndrome
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Xiu-Wen Liao, Mei-Hsuan Tseng, Yuan-Yeh Kuo, Ming Yao, Chia-Wen Liu, Yen-Ling Peng, Ming-Chih Liu, Hwei-Fang Tien, Cheng-Hong Tsai, Chieh-Yu Liu, Chien-Chin Lin, Wen-Chien Chou, Jih-Luh Tang, Hsin-An Hou, and Liang-In Lin
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0301 basic medicine ,Oncology ,Adult ,Male ,medicine.medical_specialty ,Myeloid ,Adolescent ,Kaplan-Meier Estimate ,Gene mutation ,Lower risk ,IDH2 ,lcsh:RC254-282 ,Article ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Internal medicine ,hemic and lymphatic diseases ,medicine ,Biomarkers, Tumor ,Humans ,Genetic Predisposition to Disease ,Gene ,Genetic Association Studies ,Aged ,Proportional Hazards Models ,Aged, 80 and over ,business.industry ,Hematology ,Middle Aged ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Prognosis ,Leukemia ,030104 developmental biology ,medicine.anatomical_structure ,International Prognostic Scoring System ,030220 oncology & carcinogenesis ,Myelodysplastic Syndromes ,Risk stratification ,Mutation ,Female ,business - Abstract
Gene mutations have not yet been included in the 2016 WHO classification and revised International Prognostic Scoring System (IPSS-R), which are now widely utilized to discriminate myelodysplastic syndrome (MDS) patients regarding risk of leukemia evolution and overall survival (OS). In this study, we aimed to investigate whether integration of gene mutations with other risk factors could further improve the stratification of MDS patients. Mutational analyses of 25 genes relevant to myeloid malignancies in 426 primary MDS patients showed that mutations of CBL, IDH2, ASXL1, DNMT3A, and TP53 were independently associated with shorter survival. Patients within each IPSS-R or 2016 WHO classification-defined risk group could be stratified into two risk subgroups based on the mutational status of these five genes; patients with these poor-risk mutations had an OS shorter than others in the same risk group, but similar to those with the next higher risk category. A scoring system incorporating age, IPSS-R and five poor-risk mutations could divide the MDS patients into four risk groups (P
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- 2018
27. Reduced incidence of interstitial pneumonitis after allogeneic hematopoietic stem cell transplantation using a modified technique of total body irradiation
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Yu-Hsuan Chen, Jia Hau Liu, Yung-Li Yang, Ming Chih Liu, Kai-Hsin Lin, Shang Ju Wu, Xiu Wen Liao, Bor-Sheng Ko, Ming Yao, Chi Cheng Li, Shang-Yi Huang, Meng Yu Lu, Chieh Yu Liu, Sung-Hsin Kuo, Jih-Luh Tang, Wen-Chien Chou, Chien-Ting Lin, Chien-Yuan Chen, Hsien Tang Chou, Hwei-Fang Tien, Cheng-Hong Tsai, Chieh-Lung Cheng, Hsiu-Hao Chang, Yao-Chang Chen, Yun Chiang, Szu Chun Hsu, Hsin-An Hou, Woei Tsay, Chien-Chin Lin, Sheng-Chieh Chou, Jian Kuen Wu, and Dong-Tsamn Lin
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0301 basic medicine ,Adult ,Male ,medicine.medical_specialty ,Adolescent ,medicine.medical_treatment ,Hematopoietic stem cell transplantation ,Gastroenterology ,Disease-Free Survival ,Article ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Risk Factors ,Internal medicine ,medicine ,Humans ,Transplantation, Homologous ,Child ,Radiation Injuries ,Proportional Hazards Models ,Retrospective Studies ,Multidisciplinary ,Leukemia ,Proportional hazards model ,business.industry ,Mortality rate ,Incidence ,Hematopoietic Stem Cell Transplantation ,Myeloid leukemia ,Retrospective cohort study ,Total body irradiation ,Middle Aged ,Prognosis ,Surgery ,nervous system diseases ,Transplantation ,030104 developmental biology ,Treatment Outcome ,nervous system ,030220 oncology & carcinogenesis ,Child, Preschool ,Cohort ,Female ,business ,Lung Diseases, Interstitial ,Whole-Body Irradiation - Abstract
Allogeneic hematopoietic stem cell transplantation is a curative-intent treatment for patients with high-risk hematologic diseases. However, interstitial pneumonitis (IP) and other toxicities remain major concerns after total body irradiation (TBI). We have proposed using linear accelerators with rice-bag compensators for intensity modulation (IM-TBI), as an alternative to the traditional cobalt-60 teletherapy with lung-shielding technique (Co-TBI). Patients who received a TBI-based myeloablative conditioning regimen between 1995 and 2014 were recruited consecutively. Before March 2007, TBI was delivered using Co-TBI (n = 181); afterward, TBI was administered using IM-TBI (n = 126). Forty-four patients developed IP; of these cases, 19 were idiopathic. The IP-related mortality rate was 50% in the total IP cohort and 63% in the idiopathic subgroup. The 1-year cumulative incidences of IP and idiopathic IP were 16.5% and 7.4%, respectively; both rates were significantly higher in the Co-TBI group than in the IM-TBI group. Multivariate analysis revealed that Co-TBI was an independent prognostic factor for both total and idiopathic IP. In the acute myeloid leukemia subgroup, patients with different TBI techniques had similar outcomes for both overall and relapse-free survival. In conclusion, IM-TBI is an easy and effective TBI technique that could substantially reduce the complication rate of IP without compromising treatment efficacy.
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- 2016
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28. Splicing factor mutations predict poor prognosis in patients with de novo acute myeloid leukemia
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Jih-Luh Tang, Chieh-Yu Liu, Liang-In Lin, Cheng-Hong Tsai, Ying-Chieh Chiang, Mei-Hsuan Tseng, Szu-Chun Hsu, Bor-Sheng Ko, Ming-Chih Liu, Hsin-An Hou, Ming Yao, Hwei-Fang Tien, Woei Tsay, Shang-Ju Wu, Wen-Chien Chou, Chia-Wen Liu, Shang-Yi Huang, Yuan-Yeh Kuo, Chien-Ting Lin, Chien-Yuan Chen, Chi-Cheng Li, and Chien-Chin Lin
- Subjects
0301 basic medicine ,Oncology ,Male ,medicine.disease_cause ,Bioinformatics ,chemistry.chemical_compound ,0302 clinical medicine ,hemic and lymphatic diseases ,Sanger sequencing ,Aged, 80 and over ,de novo AML ,Mutation ,Serine-Arginine Splicing Factors ,Myeloid leukemia ,Middle Aged ,Isocitrate Dehydrogenase ,DNA-Binding Proteins ,Leukemia, Myeloid, Acute ,RUNX1 ,030220 oncology & carcinogenesis ,Core Binding Factor Alpha 2 Subunit ,symbols ,splicing factor mutations ,Female ,RNA Splicing Factors ,Research Paper ,Adult ,medicine.medical_specialty ,RNA Splicing ,IDH2 ,Disease-Free Survival ,Dioxygenases ,03 medical and health sciences ,Splicing factor ,symbols.namesake ,Young Adult ,Internal medicine ,Proto-Oncogene Proteins ,medicine ,Humans ,Clinical significance ,neoplasms ,Aged ,Base Sequence ,business.industry ,Cytogenetics ,Sequence Analysis, DNA ,Phosphoproteins ,Splicing Factor U2AF ,paired sample ,Repressor Proteins ,030104 developmental biology ,chemistry ,prognosis ,business - Abstract
Mutations in splicing factor (SF) genes are frequently detected in myelodysplastic syndrome, but the prognostic relevance of these genes mutations in acute myeloid leukemia (AML) remains unclear. In this study, we investigated mutations of three SF genes, SF3B1, U2AF1 and SRSF2, by Sanger sequencing in 500 patients with de novo AML and analysed their clinical relevance. SF mutations were identified in 10.8% of total cohort and 13.2% of those with intermediate-risk cytogenetics. SF mutations were closely associated with RUNX1, ASXL1, IDH2 and TET2 mutations. SF-mutated AML patients had a significantly lower complete remission rate and shorter disease-free survival (DFS) and overall survival (OS) than those without the mutation. Multivariate analysis demonstrated that SFmutation was an independent poor prognostic factor for DFS and OS. A scoring system incorporating SF mutation and ten other prognostic factors was proved very useful to risk-stratify AML patients. Sequential study of paired samples showed that SF mutations were stable during AML evolution. In conclusion, SF mutations are associated with distinct clinic-biological features and poor prognosis in de novo AML patients and are rather stable during disease progression. These mutations may be potential targets for novel treatment and biomarkers for disease monitoring in AML.
- Published
- 2015
29. Genetic alterations and their clinical implications in older patients with acute myeloid leukemia
- Author
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Bor-Sheng Ko, Cheng-Hong Tsai, Hwei-Fang Tien, Hsu Sc, Ming-Chih Liu, Chien-Yuan Chen, Shang-Yi Huang, Yuan-Yeh Kuo, Ming Yao, Hsin-An Hou, Liang-In Lin, Lin Ct, Mei-Hsuan Tseng, Liu Cy, Liu Cw, Shang Ju Wu, Jih-Luh Tang, Li Cc, Chien-Chin Lin, Wen-Chien Chou, Chiang Yc, and Woei Tsay
- Subjects
Oncology ,Male ,Cancer Research ,medicine.medical_specialty ,NPM1 ,medicine.disease_cause ,Risk Assessment ,DNA Methyltransferase 3A ,03 medical and health sciences ,Cytogenetics ,0302 clinical medicine ,hemic and lymphatic diseases ,Internal medicine ,medicine ,Humans ,DNA (Cytosine-5-)-Methyltransferases ,Aged ,Aged, 80 and over ,Mutation ,Hematology ,business.industry ,Age Factors ,Myeloid leukemia ,Nuclear Proteins ,Middle Aged ,medicine.disease ,Genes, p53 ,Prognosis ,PTPN11 ,Leukemia ,Leukemia, Myeloid, Acute ,fms-Like Tyrosine Kinase 3 ,030220 oncology & carcinogenesis ,Fms-Like Tyrosine Kinase 3 ,Immunology ,Multivariate Analysis ,Female ,business ,Nucleophosmin ,030215 immunology - Abstract
A number of patient-specific and leukemia-associated factors are related to the poor outcome in older patients with acute myeloid leukemia (AML). However, comprehensive studies regarding the impact of genetic alterations in this group of patients are limited. In this study, we compared relevant mutations in 21 genes between AML patients aged 60 years or older and those younger and exposed their prognostic implications. Compared with the younger patients, the elderly had significantly higher incidences of PTPN11, NPM1, RUNX1, ASXL1, TET2, DNMT3A and TP53 mutations but a lower frequency of WT1 mutations. The older patients more frequently harbored one or more adverse genetic alterations. Multivariate analysis showed that DNMT3A and TP53 mutations were independent poor prognostic factors among the elderly, while NPM1 mutation in the absence of FLT3/ITD was an independent favorable prognostic factor. Furthermore, the status of mutations could well stratify older patients with intermediate-risk cytogenetics into three risk groups. In conclusion, older AML patients showed distinct genetic alterations from the younger group. Integration of cytogenetics and molecular mutations can better risk-stratify older AML patients. Development of novel therapies is needed to improve the outcome of older patients with poor prognosis under current treatment modalities.
- Published
- 2015
30. Clinico-biological significance of suppressor of cytokine signaling 1 expression in acute myeloid leukemia
- Author
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Yuan-Yeh Kuo, Chou Wc, Gong Z, Chunyu Liu, Hwei-Fang Tien, Jeng-Wei Lu, Ying-Chieh Chiang, Lin Ty, Jih-Luh Tang, Chien-Chin Lin, Mei-Hsuan Tseng, Cheng-Hong Tsai, Liang-In Lin, Hsin-An Hou, and Yen-Ling Peng
- Subjects
Adult ,Male ,0301 basic medicine ,Myeloid ,Adolescent ,Biology ,medicine.disease_cause ,Disease-Free Survival ,Animals, Genetically Modified ,03 medical and health sciences ,Suppressor of Cytokine Signaling 1 Protein ,0302 clinical medicine ,hemic and lymphatic diseases ,CEBPA ,Biomarkers, Tumor ,medicine ,Animals ,Humans ,Zebrafish ,Aged ,Aged, 80 and over ,Suppressor of cytokine signaling 1 ,Myeloid leukemia ,Hematology ,Middle Aged ,Zebrafish Proteins ,medicine.disease ,Neoplasm Proteins ,Survival Rate ,Leukemia, Myeloid, Acute ,Leukemia ,Haematopoiesis ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,030220 oncology & carcinogenesis ,Immunology ,Cancer research ,Original Article ,Myelopoiesis ,Carcinogenesis ,Nucleophosmin - Abstract
Suppressor of cytokine signaling 1 (SOCS1) protein, which encodes a member of signal transducers and activators of transcription-induced inhibitors, takes part in a negative regulation of cytokine signaling. The mechanism of SOCS1 in tumor carcinogenesis is complex and there have been no studies concerning the clinic-biologic implication of SOCS1 expression in acute myeloid leukemia (AML). Here, we first identified that higher bone marrow (BM) SOCS1 expression was closely associated with older age, FLT3-ITD, NPM1 and DNMT3A mutations, but negatively correlated with CEBPA mutation in patients with de novo AML. Compared to patients with lower SOCS1 expression, those with higher expression had lower complete remission rates and shorter overall survival. Further, higher expression of SOCS1 in the BM was an independent unfavorable prognostic factor irrespective of age, white blood cell, cytogenetics and gene mutations. Next, we generated zebrafish model overexpressing SOCS1 by spi1 promoter, which showed kidney marrow from adult SOCS1 zebrafish had increased myelopoiesis, myeloid progenitors and the kidney or spleen structure were effaced and distorted, mimicking leukemia phenotype. The SOCS1/FLT3-ITD double transgenic fish could further facilitate the leukemic process. The results indicate SOCS1 plays an important role in AML and its higher expression serves as a new biomarker to risk-stratify AML patients.
- Published
- 2017
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