1. Deinococcus radiodurans' SRA-HNH domain containing protein Shp (Dr1533) is involved in faithful genome inheritance maintenance following DNA damage
- Author
-
Mauro Pitaro, Suzanne Sommer, Federica Castani, Alex Ferrandi, Paola Barbieri, Monica Mancini, Sara Tagliaferri, Rosa Alduina, Claire Bouthier de la Tour, Ian Marc Bonapace, Mauro Fasano, Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Radiorésistance des bactéries et des archées (RBA), Département Biologie des Génomes (DBG), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Dipartimento di Biologia Strutturale e Funzionale, Universitá degli Studi dell’Insubria = University of Insubria [Varese] (Uninsubria), Department of Structural and Functional Biology, Institut de génétique et biologie moléculaire et cellulaire (IGBMC), Université Louis Pasteur - Strasbourg I-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Universitá degli Studi dell’Insubria, and Ferrandi A, Castani F, Pitaro M, Tagliaferri S, de la Tour CB, Alduina R, Sommer S, Fasano M, Barbieri P, Mancini M, Bonapace IM.
- Subjects
DNA Repair ,DNA cytosine-methylation ,DNA damage ,DR1533 locus ,Genotoxic agents ,Mn2+ ,SRA domain ,Biophysics ,Biochemistry ,Molecular Biology ,[SDV]Life Sciences [q-bio] ,perspective ,Settore BIO/19 - Microbiologia Generale ,chemistry.chemical_compound ,0302 clinical medicine ,Kanamycin ,Cloning, Molecular ,cytosine ,0303 health sciences ,biology ,Chemistry ,Genotoxic agent ,uhrf1 ,Mn(2+) ,Deinococcus ,recognition ,manganese(ii) ,DNA, Bacterial ,DNA repair ,oxidation ,Ubiquitin-Protein Ligases ,Settore BIO/11 - Biologia Molecolare ,resistance ,03 medical and health sciences ,Bacterial Proteins ,Protein Domains ,DR1533 locu ,Drug Resistance, Bacterial ,Escherichia coli ,Humans ,features ,Amino Acid Sequence ,Gene ,030304 developmental biology ,Oligonucleotide ,Computational Biology ,Deinococcus radiodurans ,DNA Methylation ,biology.organism_classification ,Molecular biology ,genomic DNA ,repair ,Mutation ,CCAAT-Enhancer-Binding Proteins ,Homologous recombination ,030217 neurology & neurosurgery ,DNA ,Genome, Bacterial ,Mutagens - Abstract
WOS:000452343100012; International audience; Background: Deinococcus radiodurans R1 (DR) survives conditions of extreme desiccation, irradiation and exposure to genotoxic chemicals, due to efficient DNA breaks repair, also through Mn2+ protection of DNA repair enzymes. Methods: Possible annotated domains of the DR1533 locus protein (Shp) were searched by bioinformatic analysis. The gene was cloned and expressed as fusion protein. Band-shift assays of Shp or the SRA and HNH domains were performed on oligonucleotides, genomic DNA from E. coif and DR. slip knock-out mutant was generated by homologous recombination with a kanamycin resistance cassette. Results: DR1533 contains an N-terminal SRA domain and a C-terminal HNH motif (SRA-HNH Protein, Shp). Through its SRA domain, Shp binds double-strand oligonucleotides containing 5mC and 5hmC, but also unmethylated and mismatched cytosines in presence of Mn2+. Shp also binds to Escherichia coli dcm(+) genomic DNA, and to cytosine unmethylated DR and E. coli dcm(-) genomic DNAs, but only in presence of Mn2+. Under these binding conditions, Shp displays DNAse activity through its HNH domain. Shp KO enhanced \textgreater 100 fold the number of spontaneous mutants, whilst the treatment with DNA double strand break inducing agents enhanced up to 3-log the number of survivors. Conclusions: The SRA-HNH containing protein Shp binds to and cuts 5mC DNA, and unmethylated DNA in a Mn2+ dependent manner, and might be involved in faithful genome inheritance maintenance following DNA damage. General significance: Our results provide evidence for a potential role of DR Shp protein for genome integrity maintenance, following DNA double strand breaks induced by genotoxic agents.
- Published
- 2019
- Full Text
- View/download PDF