1. The spread of KPC-producing Enterobacteriaceae in Spain: WGS analysis of the emerging high-risk clones ofKlebsiella pneumoniaeST11/KPC-2, ST101/KPC-2 and ST512/KPC-3
- Author
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Jesús, Oteo, María, Pérez-Vázquez, Verónica, Bautista, Adriana, Ortega, Pilar, Zamarrón, David, Saez, Sara, Fernández-Romero, Noelia, Lara, Raquel, Ramiro, Belén, Aracil, José, Campos, and Ángel, Somodevilla
- Subjects
0301 basic medicine ,Microbiology (medical) ,Genotype ,Sequence analysis ,Klebsiella pneumoniae ,030106 microbiology ,Virulence ,beta-Lactamases ,Microbiology ,03 medical and health sciences ,Enterobacteriaceae ,Prevalence ,polycyclic compounds ,Humans ,Pharmacology (medical) ,Original Research ,Pharmacology ,Cross Infection ,Molecular Epidemiology ,biology ,Molecular epidemiology ,Enterobacteriaceae Infections ,Sequence Analysis, DNA ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,biology.organism_classification ,Infectious Diseases ,Spain ,Multilocus sequence typing ,Enterobacter cloacae ,Genome, Bacterial ,Multilocus Sequence Typing - Abstract
Objectives We analysed the microbiological traits and population structure of KPC-producing Enterobacteriaceae isolates collected in Spain between 2012 and 2014. We also performed a comparative WGS analysis of the three major KPC-producing Klebsiella pneumoniae clones detected. Methods Carbapenemase and ESBL genes were sequenced. The Institut Pasteur MLST scheme was used. WGS data were used to construct phylogenetic trees, to identify the determinants of resistance and to de novo assemble the genome of one representative isolate of each of the three major K. pneumoniae clones. Results Of the 2443 carbapenemase-producing Enterobacteriaceae isolates identified during the study period, 111 (4.5%) produced KPC. Of these, 81 (73.0%) were K. pneumoniae and 13 (11.7%) were Enterobacter cloacae. Three major epidemic clones of K. pneumoniae were identified: ST11/KPC-2, ST101/KPC-2 and ST512/KPC-3. ST11/KPC-2 differed from ST101/KPC-2 and ST512/KPC-3 by 27 819 and 6924 SNPs, respectively. ST101/KPC-2 differed from ST512/KPC-3 by 28 345 SNPs. Nine acquired resistance genes were found in ST11/KPC-2, 11 in ST512/KPC-3 and 13 in ST101/KPC-2. ST101/KPC-2 had the highest number of virulence genes (20). An 11 bp deletion at the end of the mgrB sequence was the cause of colistin resistance in ST512/KPC-3. Conclusions KPC-producing Enterobacteriaceae are increasing in Spain. Most KPC-producing K. pneumoniae isolates belonged to only five clones: ST11 and ST512 caused interregional spread, ST101 caused regional spread and ST1961 and ST678 produced independent hospital outbreaks. ST101/KPC-2 had the highest number of resistance and virulence genes. ST101/KPC-2 and ST512/KPC-3 were recently implicated in the spread of KPC in Italy.
- Published
- 2016
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