1. Convergent molecular, cellular, and cortical neuroimaging signatures of major depressive disorder
- Author
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Ru Kong, Adam M Chekroud, Meghan A. Collins, Kacey Fang, Kevin M. Anderson, Tong He, Avram J. Holmes, Jingwei Li, and B.T. Thomas Yeo
- Subjects
Male ,0301 basic medicine ,Multifactorial Inheritance ,Brain Structure and Function ,Neuroimaging ,Genome-wide association study ,Genomics ,Biology ,03 medical and health sciences ,0302 clinical medicine ,Interneurons ,medicine ,Humans ,Gene Regulatory Networks ,Gene ,somatostatin interneurons ,Cerebral Cortex ,Depressive Disorder, Major ,Multidisciplinary ,major depressive disorder ,Gene Expression Profiling ,astrocytes ,Brain ,Human brain ,Biological Sciences ,medicine.disease ,Phenotype ,Gene Ontology ,030104 developmental biology ,medicine.anatomical_structure ,Gene Expression Regulation ,gene expression ,Major depressive disorder ,Female ,Autopsy ,Single-Cell Analysis ,Somatostatin ,Neuroscience ,030217 neurology & neurosurgery ,Genome-Wide Association Study ,Signal Transduction - Abstract
Significance Major depressive disorder is a debilitating condition with diverse neuroimaging correlates, including cortical thinning in medial prefrontal cortex and altered functional connectivity of cortical association networks. However, the molecular bases of these imaging markers remain ambiguous, despite a need for treatment targets and mechanisms. Here, we advance cross-modal approaches to identify cell types and gene transcripts associated with depression-implicated cortex. Across multiple population-imaging datasets (combined N ≥ 23,723) and ex vivo patient cortical tissue, somatostatin interneurons and astrocytes emerge as replicable cell-level correlates of depression and negative affect. These data identify transcripts, cell types, and molecular processes associated with neuroimaging markers of depression and offer a roadmap for integrating in vivo clinical imaging with genetic and postmortem patient transcriptional data., Major depressive disorder emerges from the complex interactions of biological systems that span genes and molecules through cells, networks, and behavior. Establishing how neurobiological processes coalesce to contribute to depression requires a multiscale approach, encompassing measures of brain structure and function as well as genetic and cell-specific transcriptional data. Here, we examine anatomical (cortical thickness) and functional (functional variability, global brain connectivity) correlates of depression and negative affect across three population-imaging datasets: UK Biobank, Brain Genomics Superstruct Project, and Enhancing NeuroImaging through Meta Analysis (ENIGMA; combined n ≥ 23,723). Integrative analyses incorporate measures of cortical gene expression, postmortem patient transcriptional data, depression genome-wide association study (GWAS), and single-cell gene transcription. Neuroimaging correlates of depression and negative affect were consistent across three independent datasets. Linking ex vivo gene down-regulation with in vivo neuroimaging, we find that transcriptional correlates of depression imaging phenotypes track gene down-regulation in postmortem cortical samples of patients with depression. Integrated analysis of single-cell and Allen Human Brain Atlas expression data reveal somatostatin interneurons and astrocytes to be consistent cell associates of depression, through both in vivo imaging and ex vivo cortical gene dysregulation. Providing converging evidence for these observations, GWAS-derived polygenic risk for depression was enriched for genes expressed in interneurons, but not glia. Underscoring the translational potential of multiscale approaches, the transcriptional correlates of depression-linked brain function and structure were enriched for disorder-relevant molecular pathways. These findings bridge levels to connect specific genes, cell classes, and biological pathways to in vivo imaging correlates of depression.
- Published
- 2020
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