1. Genetic Diversity of HIV-1 in Tunisia.
- Author
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El Moussi A, Thomson MM, Delgado E, Cuevas MT, Nasr M, Abid S, Ben Hadj Kacem MA, Benaissa Tiouiri H, Letaief A, Chakroun M, Ben Jemaa M, Hamdouni H, Tej Dellagi R, Kheireddine K, Boutiba I, Pérez-Álvarez L, and Slim A
- Subjects
- Cluster Analysis, Europe, Genotype, HIV Infections epidemiology, HIV Protease genetics, HIV Reverse Transcriptase genetics, HIV-1 isolation & purification, Humans, Molecular Epidemiology, Phylogeny, Polymerase Chain Reaction, Recombination, Genetic, Sequence Analysis, DNA, Tunisia epidemiology, Genetic Variation, HIV Infections virology, HIV-1 classification, HIV-1 genetics
- Abstract
In this study, the genetic diversity of HIV-1 in Tunisia was analyzed. For this, 193 samples were collected in different regions of Tunisia between 2012 and 2015. A protease and reverse transcriptase fragment were amplified and sequenced. Phylogenetic analyses were performed through maximum likelihood and recombination was analyzed by bootscanning. Six HIV-1 subtypes (B, A1, G, D, C, and F2), 5 circulating recombinant forms (CRF02_AG, CRF25_cpx, CRF43_02G, CRF06_cpx, and CRF19_cpx), and 11 unique recombinant forms were identified. Subtype B (46.4%) and CRF02_AG (39.4%) were the predominant genetic forms. A group of 44 CRF02_AG sequences formed a distinct Tunisian cluster, which also included four viruses from western Europe. Nine viruses were closely related to isolates collected in other African or in European countries. In conclusion, a high HIV-1 genetic diversity is observed in Tunisia and the local spread of CRF02_AG is first documented in this country.
- Published
- 2017
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