1. A ribonuclease H-oligo DNA conjugate that specifically cleaves hepatitis B viral messenger RNA.
- Author
-
Walton CM, Wu CH, and Wu GY
- Subjects
- Catalysis drug effects, Cross-Linking Reagents chemistry, Drug Design, Oligodeoxyribonucleotides chemistry, Oligodeoxyribonucleotides metabolism, Oligodeoxyribonucleotides, Antisense metabolism, RNA, Messenger chemical synthesis, RNA, Messenger metabolism, Ribonuclease H metabolism, Substrate Specificity, Hepatitis B virus genetics, Oligodeoxyribonucleotides, Antisense chemistry, RNA, Viral metabolism, Ribonuclease H chemistry
- Abstract
Ribonuclease H (RNaseH) recognizes and efficiently cleaves the RNA strand of DNA-RNA hybrids, but has no inherent sequence selectivity. However, the formation of DNA-RNA hybrids does require specific sequence recognition. On the basis of this concept, we wondered whether antisense oligonucleotides complementary to target RNA covalently linked to RNase H could be used to direct specific cleavage events mediated by RNase H. The aim of this research was to couple a DNA oligonucleotide to RNase H to confer specificity of ribonuclease activity toward hepatitis B viral (HBV) mRNA. A modified 13-base oligonucleotide that is specific for the DR1 region of HBV mRNA was conjugated to modified E. coli RNase H using a water soluble cross-linker. A 1200 base fragment of HBV RNA including the DR1 region was synthesized as a substrate using T7 RNA polymerase. Incubation of the RNase H-oligonucleotide conjugate with the RNA transcript resulted in cleavage of the HBV mRNA transcript in a concentration dependent manner. Eighty-five percent of substrate was cleaved under optimal conditions. Controls consisting of RNase H alone, oligonucleotide alone, and incubation of the conjugate with an unrelated mRNA substrate resulted in no cleavage activity. RNase H coupled to an HBV antisense oligonucleotide can specifically cleave target HBV transcripts.
- Published
- 2001
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