9 results on '"Oubiña JR"'
Search Results
2. First hepatitis B virus full-length genomic study among blood donors from Argentina: unexpected mutations in the circulating subgenotypes' proteins.
- Author
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Delfino CM, Berini C, Pedrozo W, Malan R, Blejer J, Oubiña JR, Biglione MM, and Mathet VL
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- Argentina, Base Sequence, Blood Donors, Genomics, Genotype, Hepatitis B blood, Hepatitis B virus classification, Humans, Molecular Sequence Data, Phylogeny, Genome, Viral, Hepatitis B virology, Hepatitis B virus genetics, Hepatitis B virus isolation & purification, Mutation, Viral Proteins genetics
- Abstract
Hepatitis B virus (HBV) is a worldwide public health concern. The circulation of strains carrying mutations in the viral proteins implies both clinical and therapeutics challenges. HBV complete genomes (HBV-CGs) were reported from injecting drug users and HBV chronically infected patients from Argentina-including Amerindians-although no studies were conducted in blood donors. Here, we described HBV-CG sequences from the latter population. Some of the HBV sequences classified as B2 and C2 subgenotypes clustering together with Asian isolates, while others, such as D3, F1b, and F4, were homologous to European and Latin America sequences. New substitutions for all analyzed open reading frames and changes in the HBsAg hydrophobicity profiles were detected. Several HBV-CG subgenotypes are described for the first time in this population. Mutations observed in X, PreS, and P proteins have been associated with advanced liver disease, hepatocellular carcinoma, and/or natural resistance to nucleos(t)ide antiviral treatment. It deserves to be highlighted that these substitutions were detected in a population without epidemiological risk factors for viral infection, and most importantly, without any previous antiviral treatment (natural resistance). Regarding the remaining mutations, further research is warranted in order to determine their clinical and therapeutics relevance.
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- 2015
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3. Genotypes B and C hepatocellular carcinoma-associated hepatitis B virus pre-S mutants: their detection among F1b and A2 - but not F4 - isolates from Argentina.
- Author
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Trinks J, Frías S, Frider B, Alessio A, Pozzati M, Daleoso G, León L, Batalla VM, Díaz A, Ameigeiras B, and Oubiña JR
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- Adolescent, Adult, Amino Acid Sequence, Argentina, Carcinoma, Hepatocellular complications, DNA, Viral genetics, Female, Genotype, Hepatitis B complications, Hepatitis B Surface Antigens chemistry, Hepatitis B virus classification, Hepatitis B virus isolation & purification, Humans, Liver Neoplasms complications, Male, Middle Aged, Mutation, Prospective Studies, Protein Precursors chemistry, Sequence Deletion, Young Adult, Carcinoma, Hepatocellular virology, Hepatitis B virology, Hepatitis B Surface Antigens genetics, Hepatitis B virus genetics, Liver Neoplasms virology, Protein Precursors genetics
- Abstract
Prevalence rates of hepatocellular carcinoma (HCC)-associated hepatitis B virus (HBV) pre-S mutants among most genotypes are still lacking. In this study, viral (sub)genotypes of 70 Argentine nucleotide sequences (33 newly obtained) were determined by phylogenetic analysis, and the presence of such mutants was assessed in the American continent for the first time. Nucleotide substitutions of the pre-S2 start codon were observed in 10% of the HBV/A2 sequences. Ten per cent of the HBV/A2 and 12.5% of the HBV/F1b - but none of HBV/F4 - exhibited a deletion in the pre-S1/pre-S2 region. The contribution of these variants to liver cirrhosis (LC) and/or HCC development among HBV/F and HBV/A isolates deserves further prospective clinical studies., (© 2012 Blackwell Publishing Ltd.)
- Published
- 2012
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4. Specific primer sets used to amplify by PCR the hepatitis B virus overlapping S/Pol region select different viral variants.
- Author
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Cuestas ML, Mathet VL, and Oubiña JR
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- DNA, Viral chemistry, DNA-Directed DNA Polymerase genetics, Genotype, Hepatitis B Surface Antigens genetics, Hepatitis B virus genetics, Humans, Polymorphism, Genetic, Sequence Analysis, DNA, DNA Primers genetics, DNA, Viral genetics, Hepatitis B virology, Hepatitis B virus classification, Hepatitis B virus isolation & purification, Polymerase Chain Reaction methods
- Abstract
PCR detection of viral genomes has provided new insights into viral diagnosis. Nowadays, it is the most frequently used nucleic acid testing (qualitative and quantitative) technique. The aim of this study was to analyse the major circulating hepatitis B virus (HBV) variants PCR-amplified by three sets of primers in a patient infected with genotype E. The HBV S/Pol overlapping genomic region was amplified from the serum of an infected child using three primer sets previously described. Sequence analysis corresponding to the HBV S/Pol region revealed the presence of different viral populations depending on the set of primers used. D144A S-escape mutant was detected with two of the primer sets, while the rtL217R mutant within the Pol - conferring resistance to Adefovir - could be picked up with a different pair of primer sets. This study undoubtedly implies that the description of viral polymorphisms should be stated together with the sequence of the primers used for PCR amplification when studies of escape and/or antiviral-resistant HBV mutants are carried out., (© 2012 Blackwell Publishing Ltd.)
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- 2012
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5. HDAg-L variants in covert hepatitis D and HBV occult infection among Amerindians of Argentina: new insights.
- Author
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Delfino CM, Eirin ME, Berini C, Malan R, Gentile E, Castillo A, Pedrozo W, Krupp R, Blejer J, Oubiña JR, Mathet VL, and Biglione MM
- Subjects
- Adolescent, Adult, Aged, Argentina, Asymptomatic Diseases, Enzyme-Linked Immunosorbent Assay, Female, Genotype, Hepatitis Antibodies blood, Humans, Immunoglobulin G blood, Indians, South American, Male, Middle Aged, Molecular Sequence Data, RNA, Viral genetics, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA, Seroepidemiologic Studies, Young Adult, Hepatitis B complications, Hepatitis Delta Virus genetics, Hepatitis delta Antigens blood, Hepatitis delta Antigens genetics
- Abstract
Background: Guidelines suggest that all HBsAg-positive patients should be tested for anti-HDV IgG antibodies and to confirm active hepatitis D virus (HDV) infection by detection of HDV RNA by reverse transcriptase (RT) polymerase chain reaction (PCR)., Objectives: The aim of this study was to determine the serological prevalence and molecular features of HDV within an Amerindian community from Argentina exhibiting positivity for HBsAg and/or anti-HBc total Ig., Study Design: Forty-six plasma samples were tested for the detection of total anti-HDV antibodies by ELISA. Concomitantly, a partial RNA region coding for the delta antigen (HDAg) was amplified by RT-nested PCR (RT-nPCR). In silica translation of DNA sequences into the amino acid (aa) sequence of HDAg-S (aa110-195) and HDAg-L (aa110-214) was performed., Results: Out of 46 HDV non-reactive samples by ELISA, 3 were HDV RNA positive by RT-nPCR. These samples were anti-HBc-only positive, 2 of them identified as cases of occult hepatitis B infection (OBI). The 3 cases were HBeAg-negative and showed normal ALT/AST levels. All sequences were ascribed to HDV genotype 1, but exhibited nucleotide differences in HDAg-L coding region, among which, mutations at codons 197 and 201 - reportedly known to promote in vitro an unsuitable interaction with HBsAg - were observed., Conclusions: These results provide evidence of covert HDV infection even among OBI, highlighting the need to reevaluate the currently applied guidelines for HDV diagnostic algorithms, as well as to explore if the observed mutations promote any effect on HDV pathogenesis., (Copyright © 2012 Elsevier B.V. All rights reserved.)
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- 2012
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6. New natural variants of hepatitis B virus among Amerindians from Argentina with mainly occult infections.
- Author
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Delfino CM, Berini C, Eirin ME, Malan R, Pedrozo W, Krupp R, Blejer J, Espejo R, Fierro L, Puca A, Oubiña JR, Mathet VL, and Biglione MM
- Subjects
- Adolescent, Adult, Aged, Argentina, Cluster Analysis, Cross-Sectional Studies, DNA, Viral chemistry, DNA, Viral genetics, DNA, Viral isolation & purification, Female, Genetic Variation, Genotype, Hepatitis B virus isolation & purification, Humans, Indians, South American, Male, Middle Aged, Molecular Sequence Data, Sequence Analysis, DNA, Viral Proteins genetics, Young Adult, DNA, Viral blood, Hepatitis B virology, Hepatitis B virus classification, Hepatitis B virus genetics
- Abstract
Background: Hepatitis B virus infection is frequent among Amerindians. In Argentina HBV genotypes A, B, C, D, E, F and H were described in different populations, while some cases of occult hepatitis B infection (OBI) were reported in human immunodeficiency virus (HIV) coinfected patients., Objective: To determine the prevalence, genetic diversity of HBV and to analyze the deduced amino acid sequence of both S and viral polymerase (P) genes among Amerindians of Argentina., Study Design: A cross-sectional study including 561 individuals belonging to distinct ethnic groups, the Mbyá-guaraní (MG), the Kolla (K), the Sagua-Huarpe (SH) and the Wichi (W) was performed., Results: The prevalence of HBsAg was 1.7% and 1.4% for the MG and SH, respectively, while anti-HBc was detected in all communities. HBV DNA of S/P and preCore-Core genomic regions were amplified by nested polymerase chain reaction in 59 reactive samples for anti-HBc total Ig and/or HBsAg. Of them, thirteen exhibited detectable HBV DNA, eleven of which were identified as OBI. Genotype F was predominant in the MG community with co-circulation of subgenotypes F4, F1b, A2 and D3, while subgenotype C2 prevailed within the SH community. All cases exhibited the polymorphism rtL217R within the RT domain associated to resistance to adefovir. Mutations rtD206E and rtV207I associated with lamivudine resistance were found in two MG and three SH respectively. Other new substitutions were described within the P sequence., Conclusions: This study shows for the first time the predominance of OBI, HBV subgenotypes and natural variants in Amerindians from Argentina., (Copyright © 2012 Elsevier B.V. All rights reserved.)
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- 2012
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7. Drug delivery systems and liver targeting for the improved pharmacotherapy of the hepatitis B virus (HBV) infection.
- Author
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Cuestas ML, Mathet VL, Oubiña JR, and Sosnik A
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- Antiviral Agents pharmacology, Antiviral Agents therapeutic use, Drug Delivery Systems, Hepatitis B virology, Hepatitis B virus drug effects, Humans, Liver virology, Antiviral Agents administration & dosage, Hepatitis B drug therapy, Liver metabolism
- Abstract
In spite of the progress made in vaccine and antiviral therapy development, hepatitis B virus (HBV) infection is still the most common cause of liver cirrhosis and hepatocellular carcinoma, with more than 400 million people chronically infected worldwide. Antiviral therapy with nucleos(t)ide analogues and/or immunomodulating peptides is the only option to control and prevent the progression of the disease in chronic hepatitis B (CHB)-infected patients. So far, the current antiviral monotherapy remains unsatisfactory because of the low efficacy and the development of drug resistance mutants. Moreover, viral rebound is frequently observed following therapy cessation, since covalent closed circular DNA (cccDNA) is not removed from hepatocytes by antiviral therapy. First, this review describes the current pharmacotherapy for the management of CHB and the new drug candidates being investigated. Then, the challenges in the development of drug delivery systems for the targeting of antiviral drugs to the liver parenchyma are discussed. Finally, perspectives in the design of a more efficient pharmacotherapy to eradicate the virus from the host are addressed.
- Published
- 2010
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8. Two simultaneous hepatitis B virus epidemics among injecting drug users and men who have sex with men in Buenos Aires, Argentina: characterization of the first D/A recombinant from the American continent.
- Author
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Trinks J, Cuestas ML, Tanaka Y, Mathet VL, Minassian ML, Rivero CW, Benetucci JA, Gímenez ED, Segura M, Bobillo MC, Corach D, Ghiringhelli PD, Sánchez DO, Avila MM, Peralta LA, Kurbanov F, Weissenbacher MC, Simmonds P, Mizokami M, and Oubiña JR
- Subjects
- Adult, Argentina epidemiology, Cluster Analysis, DNA, Viral genetics, Female, Genotype, Hepatitis B virus isolation & purification, Humans, Male, Middle Aged, Molecular Epidemiology, Phylogeny, Polymerase Chain Reaction methods, Polymorphism, Restriction Fragment Length, Prevalence, Recombination, Genetic, Sequence Analysis, DNA, Drug Users, Hepatitis B epidemiology, Hepatitis B virus classification, Hepatitis B virus genetics, Homosexuality, Male, Substance Abuse, Intravenous complications
- Abstract
Previous studies have revealed that hepatitis B virus (HBV)/D and HBV/F predominate among blood donors from Buenos Aires, Argentina. In the present study, blood samples from two high-risk groups were analysed: 160 corresponding to street- and hospital-recruited injecting drug users [81.2% showing the 'anti-hepatitis B core antigen (anti-HBc) only' serological pattern] and 20 to hepatitis B surface antigen (HBsAg)(+)/anti-HBc(+) men who have sex with men. HBV genotypes were assigned by polymerase chain reaction amplification followed by restriction fragment length polymorphism and confirmed by nucleotide sequencing of two different coding regions. HBV DNA was detected in 27 injecting drug users (16.9%, occult infection prevalence: 7.7%), and 14 men who have sex with men (70%). HBV/A prevailed among injecting drug users (81.8%) while HBV/F was predominant among men who have sex with men (57.1%). The high predominance of HBV/A among injecting drug users is in sharp contrast to its low prevalence among blood donors (P = 0.0006) and men who have sex with men (P = 0.0137). Interestingly, all HBV/A S gene sequences obtained from street-recruited injecting drug users encoded the rare serotype ayw1 and failed to cluster within any of the known A subgenotypes. Moreover, one of the HBV strains from a hospital-recruited injecting drug user was fully sequenced and found to be the first completely characterized D/A recombinant genome from the American continent. Data suggest that two simultaneous and independent HBV epidemics took place in Buenos Aires: one spreading among injecting drug users and another one sexually transmitted among the homosexual and heterosexual population.
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- 2008
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9. Dynamics of a hepatitis B virus e antigen minus population ascribed to genotype F during the course of a chronic infection despite the presence of anti-HBs antibodies.
- Author
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Mathet VL, López JL, Ruiz V, Sánchez DO, Carballal G, Campos RH, and Oubiña JR
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- Amino Acid Sequence, Gene Products, pol genetics, Humans, Molecular Sequence Data, Viral Envelope Proteins genetics, Evolution, Molecular, Genes, Viral genetics, Hepatitis B genetics, Hepatitis B Antibodies blood, Hepatitis B e Antigens blood, Hepatitis B, Chronic blood, Hepatitis B, Chronic virology
- Abstract
The in vivo evolution of genotype F HBV variants was recorded in a chronically infected patient throughout a 3-year observation period. Fluctuating levels of HBs Ag and anti-HBs antibodies were recorded, both of them cocirculating in peripheral blood samples at given times. Fifty S gene derived clones were sequenced and phylogenetically analyzed. As expected, some amino acid replacements within the S ORF were also observed within the P ORF while others were silent for the former. Such change was statistically significant for both S and P overlapping genes, which clearly indicates the appearance of a positive selection pressure. Supporting this notion, amino acid replacements were documented at both B and T cell epitopes in samples from 1997 and 1998. Several mutations were documented within and outside the "a" determinant in the major hydrophilic region. Such substitutions might have resulted from the attempt of HBV to evade both humoral and/or cellular immune response. To the best of our knowledge this unusual profile of HBV variants in presence of usually "neutralizing" anti-HBs antibodies was examined in vivo for the first time.
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- 2007
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