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Recently, large areas of tropical peatland have been converted into agricultural fields. To be used for agricultural activities, peat soils need to be drained, limed and fertilized due to excess water, low nutrient content and high acidity. Water depth and amelioration have significant effects on greenhouse gas (GHG) production. Twenty-seven soil samples were collected from Jabiren, Central Kalimantan, Indonesia, in 2014 to examine the effect of water depth and amelioration on GHG emissions. Soil columns were formed in the peatland using polyvinyl chloride (PVC) pipe with a diameter of 21 cm and a length of 100 cm. The PVC pipe was inserted vertically into the soil to a depth of 100 cm and carefully pulled up with the soil inside after sealing the bottom. The treatments consisting of three static water depths (15, 35 and 55 cm from the soil surface) and three ameliorants (without ameliorant/control, biochar+compost and steel slag+compost) were arranged using a randomized block design with two factors and three replications. Fluxes of carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) from the soil columns were measured weekly. There was a linear relationship between water depth and CO2emissions. No significant difference was observed in the CH4emissions in response to water depth and amelioration. The ameliorations influenced the CO2and N2O emissions from the peat soil. The application of biochar+compost enhanced the CO2and N2O emissions but reduced the CH4emission. Moreover, the application of steel slag+compost increased the emissions of all three gases. The highest CO2and N2O emissions occurred in response to the biochar+compost treatment followed by the steel slag-compost treatment and without ameliorant. Soil pH, redox potential (Eh) and temperature influenced the CO2, CH4and N2O fluxes. Experiments for monitoring water depth and amelioration should be developed using peat soil as well as peat soil–crop systems. [ABSTRACT FROM PUBLISHER]