Ghosal, Ajanta, Sardar, Sanjib K., Haldar, Tapas, Prasad, Akash, Das, Koushik, Kobayashi, Seiki, Saito-Nakano, Yumiko, Dutta, Shanta, Nozaki, Tomoyoshi, and Ganguly, Sandipan
• The muliplex PCR-RFLP method could easily detect and distinguish between human infecting genotypes of Giardia duodenalis i. e., AI/AII and BIII/BIV. • The muliplex PCR method can quickly identify mixed infection cases i.e., A+B • The results obtained by the newly developed method was concordant with previously described method i. e., Reference PCR and sequencing. • The PCR method demonstrated high degree of diagnostic sensitivity (94.2 %), accuracy (97.1 %) and specificity (100 %). Giardia duodenalis is a common cause of diarrheal illness in regions with limited resources. The demand for rapid and cost-effective detection and genotyping methods in large-scale epidemiological studies and clinical diagnostics is imperative. Hence, we developed a multiplex PCR-RFLP technique targeting the tpi gene of G. duodenalis. The assay successfully screened G. duodenalis positive clinical samples (6.33 %; 36/565). It was also able to categorize the isolates into assemblages A (41.66 %; 13/36) and B (58.33 %; 23/36), as well as into subassemblages: AI (13.8 %; 5/36), AII (27.77 %; 10/36), BIII (36.11 %; 15/36) and BIV (22.22 %; 8/36). High diagnostic sensitivity (94.2 %), specificity (100 %) and accuracy (97.1 %) of the PCR assay were obtained, indicating its reliability for diagnosing giardiasis. Notably, the assay demonstrated close concordance with microscopy (κ=0.85) and reference PCR (κ=0.98) results. The optimized method offers a cost-effective and rapid approach for G. duodenalis detection and genotyping, convenient for epidemiological studies and clinical diagnostics. [ABSTRACT FROM AUTHOR]