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A small animal population becomes extinct owing to demographic and environmental stochasticity after declining below the minimum viable population (MVP). However, the actual process of extinction derived by stochastic factors after crossing MVP has not been recorded for long-lived marine mammals. Here, we reconstructed the extinction history of a small, isolated population of dugongs in Okinawa over 125 years. The initial population size of 300 in the 19th century declined to 50 in 1916 (because of overfishing), 20 in 1979, 10 in 1999, 3 after 2006, and finally extinct in 2019. After 1979, a decline in the natural growth rate for only 20 individuals led to extinction. Long-lived animals fall below the MVP; thus, active conservation measures should have been taken much sooner than when the actual extinction happened.

Nanipora Miyazaki & Reimer, 2015 is a recently discovered genus of aragonite-skeleton producing octocorals closely related to the blue coral genus Heliopora de Blainville, 1830. Since its discovery, Nanipora has been reported from coral reefs in Okinawa, Japan, and Thailand, and from seagrass beds in the northern South China Sea. However, it remains little known and studied. Here, we report on the unexpected discovery of an abundance of Nanipora colonies in shallow waters less than 2-m deep around a CO2 vent from the uninhabited volcanic island of Iwotorishima, Okinawa, in southern Japan. Nanipora colonies were found covering both coral rubble and hard substrates, alongside a few soft coral and zoantharian species. Polyps were pale white in color with none brown or darker in coloration as in some recent reports. As the original description of N. kamurai from Zamami Island in Okinawa describes the species as azooxanthellate, as the current Iwotorishima specimens also appear to be, and recently reported specimens from Thailand, Dongsha Atoll, and Yaeyama are zooxanthellate, it may be that there are more than one Nanipora species; the type species N. kamurai that is also likely at Iwotorishima, and a zooxanthellate species that constitutes the other records. Although Nanipora is not well studied, its presence at this volcanic CO2 seep suggests it has the ability to survive under unique and extreme environmental conditions, rendering it as a potentially important subject of study in the face of increasing ocean acidification.

International audience; Maintaining coral reef ecosystems is a social imperative, because so many people depend on coral reefs for food production, shoreline protection, and livelihoods. The survival of reefs this century, however, is threatened by the mounting effects of climate change. Climate mitigation is the foremost and essential action to prevent coral reef ecosystem collapse. Without it, reefs will become extremely diminished within the next 20-30 years. Even with strong climate mitigation, however, existing conservation measures such as marine protected areas and fisheries management are no longer sufficient to sustain the ecosystem and many additional and innovative actions to increase reef resilience must also be taken. In this paper we assess the suite of protections and actions in terms of their potential be effective according to a set of criteria that include effectiveness, readiness, co-benefits and disbenefits. Even with the best scientific innovation, saving coral reefs will require a well-funded, welldesigned, and rapidly executed strategy with political and social commitments at the level of other grand challenges.

Atoll islands are small, low-lying and highly vulnerable to sea level rise (SLR). Because these islands are fully composed of the skeletons from coral reef creatures, the healthy coral ecosystem plays a pivotal role in island resilience against SLR. The environmental deterioration of reefs caused by increases in the human population has been recently reported, but the timing and process are unknown. We investigated the annual black bands in a coral boring core from Fongafale Island, the capital of Tuvalu, which is a symbolic atoll country that is being submerged due to SLR. The iron redox state and microbial gene segments in the coral skeleton might be new environmental indicators that reveal the linkage between anthropogenic activity and coral reef ecosystems. Our findings provide the first demonstration that iron sulfide has formed concentrated black layers since 1991 under the seasonal anoxic conditions inside coral annual bands. Since the 1990s, increasing human activity and domestic waste-induced eutrophication has promoted sludge and/or turf algae proliferation with the subsequent seasonal destruction, resulting in sulfate reduction by anaerobic bacteria. With the recent climate variability, these anthropogenic effects have induced the mass mortality of branching corals, deteriorated the coral reef ecosystem and deprived the resilience of the island against SLR.

New coral microatoll data allow presenting an updated late Holocene sea-level curve for the Gilbert Islands of Kiribati. Examination of build-up elevation and spatial distribution of microatolls, along with radiocarbon age data from coral samples, suggest an approximately 1 m sea-level high stand, possibly lasting from ~3500 to 1900 cal yr BP. Our sea-level curve, which is similar to the one reported from the Marshall Islands, is a baseline to reconstruct the evolution of reef flats and reef islands. In addition, it provides important contextual data to infer human settlement on islands in the west-central Pacific.

Mass bleaching is the most significant threat to coral reefs. The United States National Oceanic and Atmospheric Administration monitors world sea surface temperature (SST) and releases warnings for bleaching based on degree heating weeks (DHW), which is the accumulation of temperature anomalies exceeding the monthly maximum mean SST for a given region. DHW values >4.0 °C-weeks are thought to induce bleaching, and those >8.0 °C-weeks are thought to result in widespread bleaching and some mortality. This study validates the effectiveness of DHW as a mass bleaching index by on-site historical observation at eight sites in the northwestern Pacific Ocean. The mass bleaching events occurred during different years at different sites. The recorded years of the bleaching events matched well with DHW values >8 °C-weeks, and the logistically projected probability of bleaching against DHW showed a positive relationship. DHW provides a reasonable threshold for bleaching.

Carbonate production by large benthic foraminifers is sometimes comparable to that of corals and coralline algae, and contributes to sedimentation on reef islands and beaches in the tropical Pacific. Population dynamic data, such as population density and size structure (size-frequency distribution), are vital for an accurate estimation of shell production of foraminifers. However, previous production estimates in tropical environments were based on a limited sampling period with no consideration of seasonality. In addition, no comparisons were made of various estimation methods to determine more accurate estimates. Here we present the annual gross shell production rate of Baculogypsina sphaerulata, estimated based on population dynamics studied over a 2-yr period on an ocean reef flat of Funafuti Atoll (Tuvalu, tropical South Pacific). The population density of B. sphaerulata increased from January to March, when northwest winds predominated and the study site was on the leeward side of reef islands, compared to other seasons when southeast trade winds predominated and the study site was on the windward side. This result suggested that wind-driven flows controlled the population density at the study site. The B. sphaerulata population had a relatively stationary size-frequency distribution throughout the study period, indicating no definite intensive reproductive period in the tropical population. Four methods were applied to estimate the annual gross shell production rates of B. sphaerulata. The production rates estimated by three of the four methods (using monthly biomass, life tables and growth increment rates) were in the order of hundreds of g CaCO3 m−2 yr−1 or cm−3 m−2 yr−1, and the simple method using turnover rates overestimated the values. This study suggests that seasonal surveys should be undertaken of population density and size structure as these can produce more accurate estimates of shell productivity of large benthic foraminifers.

Worldwide, coral reef ecosystems are experiencing increasing pressure from a variety of anthropogenic perturbations including ocean warming and acidification, increased sedimentation, eutrophication, and overfishing, which could shift reefs to a condition of net calcium carbonate (CaCO3) dissolution and erosion. Herein, we determine the net calcification potential and the relative balance of net organic carbon metabolism (net community production; NCP) and net inorganic carbon metabolism (net community calcification; NCC) within 23 coral reef locations across the globe. In light of these results, we consider the suitability of using these two metrics developed from total alkalinity (TA) and dissolved inorganic carbon (DIC) measurements collected on different spatiotemporal scales to monitor coral reef biogeochemistry under anthropogenic change. All reefs in this study were net calcifying for the majority of observations as inferred from alkalinity depletion relative to offshore, although occasional observations of net dissolution occurred at most locations. However, reefs with lower net calcification potential (i.e., lower TA depletion) could shift towards net dissolution sooner than reefs with a higher potential. The percent influence of organic carbon fluxes on total changes in dissolved inorganic carbon (DIC) (i.e., NCP compared to the sum of NCP and NCC) ranged from 32% to 88% and reflected inherent biogeochemical differences between reefs. Reefs with the largest relative percentage of NCP experienced the largest variability in seawater pH for a given change in DIC, which is directly related to the reefs ability to elevate or suppress local pH relative to the open ocean. This work highlights the value of measuring coral reef carbonate chemistry when evaluating their susceptibility to ongoing global environmental change and offers a baseline from which to guide future conservation efforts aimed at preserving these valuable ecosystems.

Carbon captured by marine living organisms is called “blue carbon”, and seagrass meadows are a dominant blue carbon sink. However, our knowledge of how seagrass increases sedimentary organic carbon (OC) stocks is limited. We investigated two pathways of OC accumulation: trapping of organic matter in the water column and the direct supply of belowground seagrass detritus. We developed a new type of box corer to facilitate the retrieval of intact cores that preserve the structures of both sediments (including coarse sediments and dead plant structures) and live seagrasses. We measured seagrass density, total OC mass (OCtotal) (live seagrass OC biomass (OCbio) + sedimentary OC mass (OCsed)), and the stable carbon isotope ratio (δ13C) of OCsed and its potential OC sources at Thalassia hemprichii dominated back-reef and Enhalus acoroides dominated estuarine sites in the tropical Indo-Pacific region. At points with vegetation, OCbio accounted for 25 % and OCsed for 75 % of OCtotal; this contribution of OCbio to OCtotal is higher than in globally compiled data. Belowground detritus accounted for ∼ 90 % of the OC mass of dead plant structures (> 2 mm in size) (OCdead). At the back-reef site, belowground seagrass biomass, OCdead, and δ13C of OCsed (δ13Csed) were positively correlated with OCsed, indicating that the direct supply of belowground seagrass detritus is a major mechanism of OCsed accumulation. At the estuarine site, aboveground seagrass biomass was positively correlated with OCsed but δ13Csed did not correlate with OCsed, indicating that trapping of suspended OC by seagrass leaves is a major mechanism of OCsed accumulation there. We inferred that the relative importance of these two pathways may depend on the supply (productivity) of belowground biomass. Our results indicate that belowground biomass productivity of seagrass meadows, in addition to their aboveground morphological complexity, is an important factor controlling their OC stock. Consideration of this factor will improve global blue carbon estimates.

Low-lying, small reef islands on Pacific atolls are vulnerable to coastal erosion and flooding, mainly due to rises in sea level, as well as local stresses associated with overpopulation. Because reef island sediments on Pacific atolls are composed mostly of shells of large benthic foraminifers (LBFs), their future stability depends on understanding foraminiferal shell sources and their production rates around the islands. Here, we report on the distribution and population density of LBFs around Fongafale Island, the main populated island of Tuvalu in the South Pacific, where coastal erosion and inundation have occurred. We discuss their controlling factors, in particular, anthropogenic influences on foraminiferal distribution. The results based on multivariate analyses (canonical correlation analysis and multiple regression analysis) demonstrated that Baculogypsina sphaerulata and Amphistegina lobifera were more common on the high-energy, intertidal ocean reef flats (≤ 10 6 and ≤ 10 4 individuals m − 2 , respectively), and B. sphaerulata was less common around the populated area of the island. On the relatively low-energy subtidal lagoon reef flats, Amphistegina lessonii was the most common species, particularly in the dry (leeward) season, with an increasing density in deeper offshore zones (≤ 10 4 individuals m − 2 ). Sorites orbiculus was less common than the other species, but was found on both sides of the reef flats (≤ 10 3 individuals m − 2 ). Macroalgal δ 15 N values indicated that upwelling nutrient-rich deep water could be the source of nitrogen for oceanic waters, whereas nutrients in lagoon seawater could be partly derived from groundwater mixing with domestic wastewater, especially near the populated area. These results suggest that the distribution and population density of LBFs in the study area are influenced by spatial differences in water energy and water quality, and that B. sphaerulata is less tolerant of nutrient loading than other species. Comparison of distributions between living individuals and empty shells indicated that ocean reef flats are the primary source of foraminiferal shells for reef islands and lagoon beaches.

article i nfo Article history: The depositional processesthat formed LauraIsland,MajuroAtoll, Marshall Islands,were reconstructed basedon a facies analysis of island sediments and spine ratios, and radiocarbon ages of foraminifera. Sedimentary facies were analyzed from trenches and drill cores excavated on the island and its adjacent reef flat. Depositional ages were obtained using benthic foraminifera (Calcarina) whose spines had not been abraded. The facies were classified into two types: gravelly and sandy. The initial sediments of these sites consisted of gravelly facies in the lower horizon and sandy facies in the upper horizon. Their ages were approximately 2000 cal BP and coincident with the onset of a 1.1-m decline in regional relative sea level, which enabled deposition of the gravelly facies. Half of the sand fraction of the sediment was composed of larger benthic foraminifera. The spine ratioshowedthat theirsupply source on the reef flatwaslocated oceansideof theisland.The supplysource appears to have been caused by the relative sea-level fall. This indicates that the studied island was formed by a relative reduction in wave energy and enhanced foraminiferal supply, both of which were triggered by the late Holocene relative sea-level fall.

Coral reef islands have a self-sustaining mechanism that expands and maintains the islands through the deposition of calcium carbonate (CaCO3) by marine organisms. However, the human societies established on such low-lying coral reef islands are vulnerable to rapid sea-level rises. Enhancing the self-sustaining mechanism of coral reefs will become one of the required sustainable countermeasures against sea-level rise. We examined the feasibility of mass culturing the large benthic foraminifera Baculogypsina sphaerulata, which is known as “living sand.” We developed a rearing system with the key components of an artificial lawn as a habitat and a stirring device to create vertical water currents. Batches of B. sphaerulata in two different size groups were reared to examine size growth and reproduction under the culture conditions. All culture batches reproduced asexually following generations over 6 months in culture. The small-sized group exhibited steady growth, whereas the large-sized group underwent a reduction in mean size because large individuals (> 1.5 mm2) died off. Similar traits of size structure between the culture batches and natural populations indicate that our culturing conditions can successfully reproduce environments similar to the habitat of this species. Reproduction, consistent size growth, and size structure similar to the natural population indicate that the examined rearing system is viable for culturing Foraminifera at a large scale.

‘Blue Carbon’, which is carbon captured by marine living organisms, has recently been highlighted as a new option for climate change mitigation initiatives. In particular, coastal ecosystems have been recognized as significant carbon stocks because of their high burial rates and long-term sequestration of carbon. However, the direct contribution of Blue Carbon to the uptake of atmospheric CO2 through air-sea gas exchange remains unclear. We performed in situ measurements of carbon flows, including air-sea CO2 fluxes, dissolved inorganic carbon changes, net ecosystem production, and carbon burial rates in the boreal (Furen), temperate (Kurihama), and subtropical (Fukido) seagrass meadows of Japan from 2010 to 2013. In particular, the air-sea CO2 flux was measured using three methods: the bulk formula method, the floating chamber method, and the eddy covariance method. Our empirical results show that submerged autotrophic vegetation in shallow coastal waters can be functionally a sink for atmospheric CO2. This finding is contrary to the conventional perception that most near-shore ecosystems are sources of atmospheric CO2. The key factor determining whether or not coastal ecosystems directly decrease the concentration of atmospheric CO2 may be net ecosystem production. This study thus identifies a new ecosystem function of coastal vegetated systems; they are direct sinks of atmospheric CO2.

To evaluate contamination of coastal sediments along Fongafale Islet, Central Pacific, a field survey was conducted in densely populated, sparsely populated, open dumping and undisturbed natural areas. Current measurements in shallow water of the lagoon indicated that contaminants from the densely populated area would only be transported for a small proportion of a tidal cycle. Acid-volatile sulfides were detected in both the intertidal beach and nearshore zones of the densely populated area, whereas these were no detection in the other areas. This observation lends support to argument that the coastal pollution mechanism that during ebb tide, domestic wastewater leaking from poorly constructed sanitary facilities seeps into the coast. The total concentrations of Cr, Mn, Ni, Cu, Zn, Cd and Pb were relatively high in all of the areas except the undisturbed natural area. The indices of contamination factor, pollution load index and geoaccumulation index were indicative of heavy metal pollution in the three areas. The densely populated area has the most significant contamination; domestic wastewater led to significant contamination of coastal sediments with Cr, Zn, Cu, Pb and Cd. The open dumping area is noteworthy with respect to Mn and Ni, which can be derived from disposed batteries.

Calcium carbonate shells produced by large benthic foraminifers (LBF) are major components in sediments on coral reef islands. Quantifying growth patterns of LBFs is important for accurate estimation of calcium carbonate production. To quantify the growth pattern of Baculogypsina sphaerulata in a tropical area, we developed a novel rearing method with high survival rate (> 90%) by creating constant disturbance with the combination of a floating chamber and coral sand. Through the rearing experiments, coral sand has a significant inhibitory effect on lethal epiphyte infestation on B. sphaerulata in a rearing chamber. This implies that the inhibitory effect by such disturbance on the epiphyte may be one of the reason that B. sphaerulata prefer the most exposed areas among LBFs. The novel rearing method allowed the quantification of the relationship between size and growth rate. The growth rate of B. sphaerulata showed size dependence with a peak at 0.8–1.2 mm 2 , and development time to adult size was estimated at 1.3 year with substantial variation induced by variability in growth parameters. The estimated development time is similar to that reported in subtropical areas (1.5 year). This quantified growth pattern of the species will apply to the analysis of population dynamics and estimation of CaCO 3 productions of the species in a tropical area.

Research combining the analysis of coral distribution in volcanically acidified waters with laboratory culture experiments indicates that reef communities may shift from reef-building hard corals to non-reef-building soft corals under CO2 partial pressure (pCO2) levels of 550–970 μatm that are predicted to occur by the end of this century.

In 2007, high-temperature-induced mass coral mortality was observed in a well-developed fringing reef area on the southeastern coast of Ishigaki Island, Japan. To analyze the response of the corals to thermal stress, the coral cover was examined using Quickbird data, taken across the reef flat just before and after the bleaching event and performing a reef scale horizontal 2-dimensional thermal model simulation. The Quickbird data consisted of multispectral (MSS) imagery, which had a spatial resolution of 2.4 m, and panchromatic (PAN)-fused multispectral imagery, which had a 0.6-m spatial resolution. The observed changes in coral cover implied that the delineation of partially bleached coral was more precise with PAN + MSS. The classification accuracy achieved using PAN + MSS (93%) was superior to that obtained using MSS (88%). The in situ water temperature observations and 2-dimensional thermal model simulation results indicated that the water temperature fluctuated greatly in the inner reef area in late July 2007. Different thermal stress indices, including daily average temperature, daily maximum excess temperature, and daily accumulated temperature, were examined to define a suitable index that represented the severity of the thermal stress on coral cover. The results suggested that the daily accumulated temperature that occurred during the maximum sea surface temperature period of the bleaching season provided the best predictor of bleaching. The changes in water temperature, bathymetry, and coral patch size affected the severity of bleaching; therefore, the spatial dependence of these variables was examined using Moran’s I and Lagrange multiplier tests. An investigation of the effect of coral patch sizes on coral bleaching indicated that large coral patches were less affected than the small patches, which were more likely to suffer bleaching and coral mortality.

Lanyu and Lutao Islands to the southeast of Taiwan are located in the northern extension of the Luzon Arc. Crustal deformation of these islands provides a key to understand the collision of the Luzon Arc against Taiwan. To clarify the style and the rate of vertical movement during the Holocene, uplifted coral reefs fringing these two islands were investigated. Living corals were also investigated for comparison with fossil corals. It was found that Isopora palifera lives dominantly in the upper slope of the present-day fringing coral reefs in Lanyu Island at an average depth of 101 ± 46 cm (one standard deviation) below mean sea level. Using I. palifera as an accurate indicator of paleo-sea levels, Holocene relative sea-level changes were reconstructed. Lanyu Island has been uplifted continuously at a rate of 2.0 mm yr−1, at least during the late Holocene from 2,269 cal. yr BP to the present. Lutao Island has been uplifted at an average rate of 1.2 mm yr−1, since at least 5,749 cal. yr BP, although it is unclear whether the uplift was continuous. The present observations, combined with the GPS displacement field and deep crustal structure, suggest that the continuous uplift is related to aseismic slip on the Longitudinal Valley Fault.

Coastal stratigraphy near Port Blair, Andaman Islands, where the A.D. 2004 Sumatra-Andaman earthquake was accompanied by ∼1 m of subsidence, provides evidence for two prior earthquakes, perhaps both from the past 400 yr. The first of these (event I) is marked by an abrupt mud-over-peat contact best explained by subsidence similar to that in 2004. Event II is evidenced by an overlying chaotic layer composed of mud clasts in a sandy matrix that is connected with feeder dikes. These mud clasts, probably produced by liquefaction, are capped by laminated sand and mud that we ascribe to an event II tsunami. Radiocarbon ages of plant remains in the peat give discordant ages in the range 100 B.C. to A.D. 1950. Event I probably resembled the 2004 Sumatra-Andaman earthquake in that it was accompanied by subsidence (as much as 1 m) but not by strong shaking near Port Blair. If event II was the A.D. 1762 Arakan earthquake, the laminated sand and mud provide the first evidence that this earthquake was associated with a tsunami.

Cores from Holocene reefs provided a growth history and species-level identification of corals and demonstrated the most important reef builders during the formation stage. This knowledge is important to determine a principle for reef formation and to provide preservation plans in the near future. A biological and sedimentological study of sediment cores recovered from the Palau Islands and Yoron Island, northwest Pacific, revealed four major facies: corymbose Acropora, arborescent Acropora, massive Porites, and detritus. Species-level observations show that arborescent Acropora (A. muricata and A. intermedia) contributed to reef growth under low- to moderate-energy conditions, whereas corymbose and tabular Acropora (A. digitifera, A. hyacinthus, and A. robusta/A. abrotanoides) and I. palifera were key species for reef formation under high-energy conditions during Holocene sea-level rise and the ensuing period of sea-level stability. Once sea level had stabilized, massive Porites became restricted to areas subjected to low-energy, turbid conditions. These key species are successful corals because the ecological strategy is rapid growth, determinate growth, a high degree of colony integration, strongly resistant to wave action, and rapid local dispersion via fragmentation. Moreover, the western boundary current (Kuroshio) flows along the reefs in the northwest Pacific and it is easy for key species to distribute throughout the region during the period of Holocene sea-level rise and stabilization. These features are a principle for reef formation during sea-level changes. These key species played a significant role in Holocene reef formation in the northwest Pacific; however, coral mortality, caused by climate change, has recently been widely reported. Moreover, the decrease in key species abundance in present-day reefs has been more severe than that in any other species. These geological findings have important implications regarding the appropriate use of coral transplantation and decisions regarding the optimal location and size of marine protected areas.

Holocene sea-level change provides direct evidence of the melting of ice sheets; however, our understanding of the timing and course of such change is limited by a lack of information regarding environmental condition of corals. For example, Holocene sea-level curves are compiled based on water depths estimated from the occurrence of a small number of coral species, as species identification is difficult work. The error associated with this method of estimating sea level exceeds ± 2.5 m. In addition, there generally occurs a difference in the living-water depth of corals between high-energy reefs and low- to moderate-energy reefs. This difference in living-water depth also results in an error in reconstructed sea-level curves. In the present study, we analyzed drill core and recorded the vertical distribution of corals at the high-energy Ibaruma reef and low- to moderate-energy Fukido reef, Ishigaki Island, Ryukyu Islands, Japan. Analyses of corymbose Acropora (A. digitifera), massive Goniastrea (G. retiformis), massive Pocillopora (P. verrucosa), massive Platygyra (P. ryukyuensis), and other corals enables the accurate reconstruction of a sea-level curve because these species are distributed in a narrow range, with a weighted mean (Mw) error of between ± 0.5 and ± 2.5 m. These observation data from Ibaruma and Fukido reefs can be used to reconstruct Holocene sea-level curves based on drill core data from Ibaruma reef; however, the two reefs yield contrasting sea-level curves: the curve reconstructed based on data from Fukido reef is several meters deeper than that reconstructed based on data from Ibaruma reef. This discrepancy reflects the different energy levels of the two reefs (high-energy at Ibaruma reef and low- to moderate-energy at Fukido reef). Therefore, the accurate reconstruction of a Holocene sea-level curve requires the identification of species from drill core and observations of the vertical distribution of species at the present-day reef at a location close to the drilling site. The Holocene sea-level curve reconstructed based on drill core data from Ibaruma reef reveals a rapid sea-level rise of approximately 7.5 m kyr− 1 between 8000 and 6000 cal. years BP. The rate of sea-level rise decreased from 7.5 to 3.5 m kyr− 1 between 6000 and 5000 cal. years BP. A mid-Holocene highstand occurred at around 5000 cal. years BP, at a level of approximately 3 ± 2.5 m above the present mean sea level. The increase in ocean volume corresponding to this sea-level rise indicates that melting of the Antarctic ice sheet continued beyond 6000 cal. years BP, as most of the Northern Hemisphere ice sheets had melted by 6000 cal. years BP, resulting in sea levels similar to those of the present day.

Coral reefs are influenced by global and local factors, and living corals are currently faced with a potential loss of species diversity. Knowledge of the relationship between species diversity and reef growth during the Holocene is important in terms of accurately reconstructing natural conditions prior to recent disturbances (e.g., human impact, pollution, and over-harvesting) and in predicting future scenarios (e.g., abrupt sea-level rise, coastal change, and economic services). This study seeks to characterize the Holocene and present-day reef at Ishigaki Island in the Ryukyu Islands, focusing on spatial and temporal variations in the relationship between species diversity and reef growth. The analysis is based on a drilling core obtained for the Holocene reefs and quantitative species-diversity data (Shannon and Weaver's diversity index, H ′) obtained for the present-day reef. H ′ was calculated for four coral communities surveyed at the Ibaruma and Fukido reefs. The Holocene sequence was dominated by the corymbose coral community (e.g., Acropora digitifera , A. hyacinthus , Goniastrea retiformis , and Platygyra ryukyuensis ), yielding an H ′ value of 1.6. The encrusting coral community (e.g., Echinopora lamellose and Pachyseris rugosa ) showed the highest diversity at the reef ( H ′ = 2.2); however, this community was not one of the main reef builders during the Holocene. The massive coral community (e.g., Porites lutea and Favites chinensis ) showed the lowest diversity ( H ′ = 0.6). It also made a minor contribution to reef building; this community appeared in a shallow lagoon once sea level had stabilized. The arborescent coral community (e.g., A. formosa and A. nobilis ) was one of the main reef builders, although yielding an H ′ value of much less than 1.0. Species diversity is not a prerequisite in terms of Holocene reef growth. Thus, a few species (e.g., A. digitifera , A. hyacinthus , A. formosa , A. nobilis , G. retiformis , and P. ryukyuensis ) from two main reef-building communities are important for reef growth. These corals that act as reefs are characterized by high growth rates, having an upward reef growth rate of 2–12 m kyr − 1 in the Indo-Pacific during the Holocene.

Historical ecology has provided the field of geoarchaeology in Oceania with the concept of an island landscape as a historical product, invented from the dynamic interactions between natural processes and human agency. Since Davidson's work in Nukuoro (1971) and Dye's introduction to the prehistory of Majuro in the Marshall Islands (1987), systematic excavations of atoll islets have also been based on this tenet. Following this concept, this study presents a geoarchaeological examination of the long-term history of the pitagricultural landscape in Laura Islet of Majuro Atoll, which now consists of 195 pits showing remarkable undulation and anthropogenic vegetation on their spoil banks. Our excavations, conducted since 2003, have revealed that human habitation on Laura began as early as 2,000 years ago, soon after the emergence of the core islet, which probably followed a relative drop in sea level in the late Holocene. Some centuries later, the inhabitants started excavating agricultural pits fo...

Coral reef growth is largely controlled by the wave energy associated with ocean swells and local winds. This growth has responded to changes in wave conditions that evolved in concert with Holocene sea-level changes. We analyzed Holocene facies of the Ibaruma and Fukido reefs of Ishigaki Island, southern Ryukyu Islands, in the context of temporal and spatial changes in wave conditions by comparing present-day coral assemblages and internal (fossil) reef facies. Four major coral assemblages that developed under different wave-energy conditions were recognized. Six cores recorded a Holocene reef sequence consisting of four sedimentary facies that differed in the relative volumes of four coral taxa: Acropora digitifera and Acropora hyacinthus, and lesser amounts of Favia stelligera and Montastrea curta. Holocene windward reef growth began at 7820 cal. years BP after flooding of the Pleistocene reef limestone surface; the ensuing reef growth kept up with the rapid sea-level rise. A vertical growth rate of 7.5 m/1000 years during reef nucleation and early growth stages decreased to 3.5 m/1000 years during the main stage of reef framework development. The uppermost part of the windward reef consisted of a very robust framework, unlike the open framework of the leeward reef. Ages indicated that the uppermost leeward reef was ca. 3000 years younger than the uppermost windward reef. These variations in facies development and timing were caused by differences in local wind-driven wave conditions.

The distributions and population densities of large benthic foraminifers (LBFs) were investigated on reef flats of the Majuro Atoll, Marshall Islands. Annual sediment production by foraminifers was estimated based on population density data. Predominant LBFs were Calcarina and Amphistegina, and the population densities of these foraminifers varied with location and substratum type on reef flats. Both foraminifers primarily attached to macrophytes, particularly turf-forming algae, and were most abundant on an ocean reef flat (ORF) and in an inter-island channel near windward, sparsely populated islands. Calcarina density was higher on windward compared to leeward sides of ORFs, whereas Amphistegina density was similar on both sides of ORFs. These foraminifers were more common on the ocean side relative to the lagoon side of reef flats around a windward reef island, and both were rare or absent in nearshore zones around reef islands and on an ORF near windward, densely populated islands. Foraminiferal production rates varied with the degree to which habitats were subject to water motion and human influences. Highly productive sites (>103 g CaCO3 m−2 year−1) included an ORF and an inter-island channel near windward, sparsely populated islands, and a seaward area of a reef flat with no reef islands. Low-productivity sites (

We report on a correction procedure for light refraction effects at a two-medium boundary, based on the stereo view of underwater objects, to estimate underwater topography using photogrammetry. Because theoretically, no solution exists for photogrammetrically observed positions when the incident angles of light rays from an underwater object of interest to two cameras are different; approximation in solving the positions is needed. We show the feasibility of the approximation theoretically by examining the horizontal differences between the observed and true positions when objects are in line along an airplane track or when the incident angles are identical. We applied the procedure to bathymetric mapping of Shiraho Reef, southwest Japan, using a stereo-pair of aerial photographs. Comparison of the corrected depths with measured depths at 658 points showed a mean error and standard deviation of 20.06 m and 0.36 m, respectively, for measured depth range of 23.4 m to 20.2 m.

Significant coral bleaching was observed in summer in Shiraho reef, a fringing reef in the east coast of Ishigaki Island, Okinawa, Japan. To find relationship between coral bleaching and thermal stress in the reef and its governing factors, we have examined data obtained by field surveys in July 2003 and 2007 at Shiraho reef and the corresponding numerical simulation results for spatio-temporal variations of water temperature. The results of analysis showed that the spatial distribution of the degree of coral bleaching in the reef is closely related with that of the mean water temperature, which is strongly governed not only by local topography but also by meteorological conditions, especially latent heat flux.

Atoll islands with low-lying and little resource have high vulnerability against the sea-level rise due to the global warming. The countermeasures concerning the future land maintenance against the sea-level rise should be considered immediately. However, the studies on the quantitative information or numerical models of atoll island changes are quite few. Thus, in this study, measurement of beach profiles in Laura islet located in the western part of Majuro Atoll, Marshall Islands were carried out on the same profiles which were measured in 1997 and 1998 by SOPAC. Comparing our measurement results with the previous SOPAC's profiles revealed the quantitative profile changes during the last decade: from 1997 to 2007. It also revealed that the lagoonal coastline in Laura islet were stable in the last decade except some coast lines. We also reproduced these profile changes by the numerical model which was developed in this study based on longshore sediment transport system. The results of numerical calculation and the measured geographical changes showed a good agreement.

The atmospheric CO2 crossed over 400 ppm and we must prepare for a “+2 °C world” during this century. Coral reefs are directly related to each scenario of global warming: increase in CO2 results in ocean acidification and suppresses calcification, rise in sea surface temperature leads to severe bleaching, and sea level rise causes submergence of coral reefs and atoll islands. They are the most sensitive ecosystem and act as an early warning system to examine and predict response of ecosystem to the global warming. Records of bleaching events and SST for the last 17 years in the northwest Pacific show that 2 °C SST rise would induce severe bleaching of coral reefs. Reduction of ocean surface water pH by 0.3 would cause shift from hard coral to non-calcifying macroalgae or soft coral populations in coral reefs. Submergence of coral reefs by sea level rise of up to one meter results in a loss of their breakwater function and in atoll islands submergence of national land. “+2 °C world” is the threshold to maintain coral reefs. Factors of global warming and responses of coral reefs are coupled to form feedback loops, which enhance or stabilize the changes within a system.

The reef islands formed on coral atolls are generally small, low, and flat, with elevations of only a few meters. These islands are thus highly vulnerable to elevated sea levels caused by extreme events and global warming. Such vulnerability was recently evidenced at Fongafale Islet, the capital of Tuvalu, when it flooded during accelerated spring high tides possibly related to sea level rise caused by global warming. Many factors, not only environmental but also economic and social, determine the vulnerability of an island to sea level rise. In this study, we used data spanning 108 yrs to reconstruct changes in topography, land use/cover, population, and the distribution of buildings at Fongafale Islet. The results indicate that the vulnerability of Fongafale Islet relates to its original landform characteristics: the central part of the island was formerly dominated by swampland that flooded at high tides. Fongafale Islet experienced greater population in-migration and centralization beginning in the 1970s following the independence of Tuvalu and Kiribati. Migrants were also responding to declines in overseas mining operations and limited options for paid employment. As the population increased, construction took place in vulnerable swampland areas. Our results clearly demonstrate that examinations of global environmental issues should focus on characteristics specific to the region of interest. These characteristics should be specified using historical reconstruction to understand and address the vulnerability of an area to global environmental changes.

We measured the air–water CO2 flux in four coastal regions (two coral reefs, one estuary, and one coastal brackish lake) using a chamber method, which has the highest spatial resolution of the methods available for measuring coastal air–water gas flux. Some of the measurements were considerably higher than expected from reported wind-dependent relationships. The average k600 values for Shiraho Reef, Fukido Reef, Fukido River, and Lake Nakaumi were 1.5 ± 0.6, 3.2 ± 0.3, 0.69 ± 0.26, and 2.2 ± 0.9 (mean ± S.D.) times larger than the wind-dependent relationships. Results were compared with current-dependent relationships and vertical turbulence intensity (VTI). VTI is an index of water-surface stirring and is calculated from near-surface vertical velocity. Although some measurements from the reefs and river closely matched those expected from wind-dependent relationships, others were considerably higher. All data were correlated with VTI and were qualitatively explained by bottom macro-roughness enhancement. In Lake Nakaumi, results tended to differ from the wind-dependent relationships, and the difference between the measured and expected gas-transfer velocity was correlated with biological DO changes and/or the intensity of density stratification. We found these factors to have important effects on coastal gas flux. In addition, the chamber method was an effective tool for evaluating coastal gas flux.

Concentration of dissolved and particulate carbon (C), nitrogen (N), and phosphorus (P) were measured daily and seasonally in the water column of a coral reef lagoon at Ishigaki Island. Concentrations of dissolved inorganic N and P (DIN, DIP), dissolved organic C and N (DOC, DON), particulate organic C, and particulate N and P (POC, PN, PP) were usually higher in the lagoon than at offshore stations, while dissolved organic P (DOP) was higher at the offshore stations than in the lagoon. Concentration ratios of DIN:DIP and PN:PP were near 16:1 in winter and >20:1 in summer. DON:DOP was always ≥30. Total P (DIP + DOP + PP) was fairly constant around 0.177 ± 0.025 μmol l–1 (mean ± SD), suggesting conservative behavior of water-column P around this reef. DIP and PP seemed to be produced at the expense of DOP, and PP rather than DIP increased when gross primary production (GPP) was high. In contrast, total N (DIN + DON + PN) showed large spatial and seasonal variation from 4.3 to 12.4 μmol l–1. DON and PN increased when GPP and DIN:DIP were high, which suggests that export production of organic N by the lagoon biota was enhanced by primary production and the availability of N relative to P. Estimation of C, N, and P exchange fluxes between the lagoon and the outer ocean using a simple hydrodynamic model showed that the lagoon ecosystem released N (especially DIN) but not P to the surrounding ocean. Oceanic DOP could be the major source for the P budget of the lagoon. While the lagoon was a net source of organic C to the outer ocean, the net export was only a minor fraction (

The ability of five satellite sensor bands (IKONOS band 4, Terra ASTER bands 3 and 4, and Landsat ETM+ bands 4 and 5) was examined to extract the waterline at coral reef coasts (Majuro Atoll, Marshall Islands) using different wavelength regions (near infrared [NIR] and shortwave infrared [SWIR]) and different spatial resolutions (4, 15, and 30 m). After performing georeferencing and normalization of the images, density slicing was used to extract the waterline. Comparisons of extracted waterline positions with ground-level data for eight transects and global positioning system (GPS) tracks of the island shorelines showed that NIR bands were superior to SWIR bands because of the characteristics of the coral reef coasts, including a lack of foam and suspended sediments (which can affect the NIR wavelength region, if present) and the presence of remnant water on reef flats during low tide (which can affect the SWIR wavelength region). A linear relationship was found between the estimation errors of waterline positions and the spatial resolutions of the NIR sensors. Analysis on estimation errors and image costs showed that Terra ASTER band 3 was the most cost-effective sensor for extracting waterlines with reasonable accuracy. The results serve as general guidelines for using satellite-derived data to estimate intertidal topography and detect and monitor shorelines in coral reef environments.

We studied the seawater carbon dioxide (CO2) system in the Palau coral reef by measuring total alkalinity (TA) and total dissolved inorganic carbon (DIC). Variation in the CO2 system on the reef flat and in the lagoon was analyzed by TA–DIC diagrams, taking into accounts the differing residence times of seawater. CO2 in the offshore water was relatively stable in space and time, but on the reef flat it was subject to rapid (about 3 h) and substantial changes due to photosynthesis and calcification during the day and due to respiration and calcification at night. Water flowed into the lagoon where decomposition of organic matter and continuing calcification occurred over relatively long residence times (,30 d). Despite the spatial and temporal variations, the center of the lagoon had relatively constant TA and DIC values similar to the mean values for the entire lagoon. A long-term 30–40% decrease in reef productivity and calcification has occurred over the last decade, primarily a result of degradation of the reef environment following a major coral reef bleaching event in 1998. This is reflected in decreases in the differences in TA and DIC between offshore lagoon waters and those in center of the lagoon.

In the present study, the applicability of the continuous monitoring of pH and partial pressure of CO2 (pCO2) to the investigations of coral reef community metabolism was examined. Of the four measurable parameters of the aquatic carbonate system, pH, pCO2, total alkalinity (TA), and total inorganic carbon (TIC), only pH and pCO2 could be continuously monitoring. Although the values of TA and TIC calculated from the pH and pCO2 data were not more precise than direct measurements, the continuous monitoring data with high time-resolution were shown to provide good estimations of the changes in CO2-related variables using the least-squares method. A new equation for estimating inorganic carbon metabolism (precipitation and dissolution of CaCO3: g) with an initial value of TA and a simplified equation for estimating organic carbon metabolism (photosynthesis and respiration: p) also helped to minimize the uncertainty. A simulation analysis showed that the standard errors for the calculations of the rates of g and p were less than ±5μmol kg-1 h-1 when pH (±0.005unit) and pCO2 (±2μatm) were monitored at 1-min intervals for 1h; this error is comparable to that of the calculations made using direct measurements of TA (±4μmol kg-1) and TIC (±2μmol kg-1) at the start and end of monitoring. The pH and pCO2 monitoring, tested in the present study at the Shiraho coral reef (Ishigaki Island, Japan), resulted in estimates for g and p that were equivalent to those calculated from TA-TIC direct measurements. The continuous monitoring of pH and pCO2 has been shown both theoretically and experimentally to be adequate for the estimation of coral reef community metabolism.

Larval dispersal and recruitment are important factors that determine the distribution of adult corals. The relationships between larval dispersal, recruitment, and the adult distribution of the blue octocoral, Heliopora coerulea, were investigated on Shiraho Reef, Ishigaki Island, southwest Japan. Heliopora coerulea is a surface brooder that releases planulae in June or July on Shiraho Reef. We observed planulae between 1998 and 2000 and found that they did not swim actively; instead, they crawled into their settlement positions after becoming grounded on the substratum. Planulae occurred throughout the water column and were dispersed by tidal and wind-driven currents around the parent population on the reef flat. Recruitment was observed only within 350 m of the parent populations, including areas between the branches of the adult colony. The planulae of H. coerulea had a narrow dispersal range as a result of their mostly benthic, shorter larval duration, and the influence of weaker currents. Thus, the dispersal distance of larvae is determined by their position in the water column, the currents that deliver the larvae, and the competency period of the larvae. The narrow dispersal range of H. coerulea was consistent with recruitment of sexually derived larvae onto their natal reef.

Wave energy induced by ocean swell and local winds is an important factor controlling the coral reef development. Here we compare and contrast facies, ages, and accretion rates of reefs that developed independently along windward and leeward margins of the same island. As both reefs face the open ocean, swells provide a background of low- to medium-energy condition with additional energy along windward margins due to prevailing winds. This similarity of the wave-energy regimes (medium to high energy) produced a similar framework facies that was constructed by robust-branching Acropora. However, much greater lateral accretion rates were observed in the high-energy reef than in the medium-energy reef. Also, coral cobble facies were only found in the medium-energy reef, indicating that the reef framework was more susceptible to storm breakage than that in the high-energy reef. These differences are attributable to the differing biological and ecological responses of corals to wave energy and water motion.

In a coral reef environment, a slight increase in dissolved inorganic nitrogen (DIN;⩾1.0 μM) can alter the ecosystem via macroalgal blooms. We collected seagrass leaves from the tropical and subtropical Pacific Ocean in five countries and examined the interactions between nutrient concentrations (C, N, P), molar ratios of nutrients, and δ 15 N to find a possible indicator of the DIN conditions. Within most sites, the concentrations of nutrients and their molar ratios showed large variations owing to species-specific values. On the other hand, almost identical δ 15 N values were found in seagrass leaves of several species at each site. The correlations between δ 15 N and nutrient concentrations and between δ 15 N and molar ratios of nutrients suggested that nutrient availability did not affect the δ 15 N value of seagrass leaves by altering the physiological condition of the plants. Increases in δ 15 N of seagrass leaves mostly matched increases in DIN concentrations in the bottom water. We suggest that δ 15 N in seagrass leaves can be a good tool to monitor time-integrated decrease/increase of DIN concentrations at a site, both in the water column and the interstitial water.

Groundwater discharge from adjacent terrestrial areas can be a potentially important nutrient source to coastal coral reefs, since adjacent lands are often overlaid with permeable bedrock such as limestone. The quantity of groundwater nitrogen discharged into the Shiraho and Kabira coral reefs from their namesake watersheds on Ishigaki Island southwest of the Ryukyu Islands, Japan (24°19′–37′N, 124°4′–21′E) was monitored. These watersheds were subject to different types of nitrogen loading. The groundwater nitrogen discharge was compared by two independent methods, one based on measuring dissolved inorganic nitrogen (DIN) concentrations in the groundwater near the coastline, the other by estimating nitrogen loading from various land uses within the watershed. For a common watershed, the two methods agreed within a factor of two. The Shiraho reef received 4- or 5.5-fold more nitrogen than the Kabira reef. Groundwater discharge contributes significantly to the reef nitrogen budget, and is potentially a key factor controlling the biomass and succession of aquatic vegetation of the reefs.

We measured the C/N ratio and d 15 N values of two brown macroalgae— Padina spp. and Dictyota sp., which are distributed over all the subtropical fringing reefs of the Ryukyu Islands, Japan—to evaluate the feasibility of these algae as indicators of the terrestrial nitrogen load to the reef. The correlations between the distance from the shoreline and algal C/N ratio and surrounding NO concentrations were not clear, although their average values among the 2 3 reefs seemed to indicate differences in nitrogen loadings from the land. The d 15 N values of these algae, on the other hand, linearly or curvilinearly decreased from 18‰ to 12‰ with increasing distance from the shoreline, indicating the difference in nitrogen sources available to macroalgae. The slope of the decline among eight study areas had different characters, which seemed to depend on the residence time of reef seawater and the fluxes of terrestrial nitrogen. Using d 15 N values of brown algae as an indicator, we confirmed that primary producers, such as macroalgae on the reefs, assimilated land-derived nitrogen and successfully evaluated time-integrated effects of terrestrial nitrogen on coral reef algae, which had been missed by conventional monitoring of the water column nutrients.

Internal facies and development of an oceanic island's barrier reef were revealed by the stratigraphical study of six drill cores in Palau Islands, western Pacific. The Holocene reef development is primarily constrained at its foundation by the antecedent topography of Pleistocene substratum. Holocene barrier reef is an increment on the Pleistocene barrier reef, which had been subaerially exposed during glacial stages. About 8300 cal. year BP (calibrated calendar years B.P.), branching Acropora facies initially formed a bank on the seaward side of a Pleistocene limestone surface with a vertical accumulation rate as high as 30 m/ka (ka=1000 years). After 7200 cal. year BP, when the sea-level rise rate decreased, reef crest facies caught up with the sea surface with an accumulation rate of less than 2.2 m/ka. Corals found in the reef crest facies are similar to the present-day reef crest corals dominated by Acropora digitifera and A. humilis. After the reef crest was formed, bioclastic sand and gravel facies prograded lagoonward of the reef crest and consisted mostly of reef derived materials. The construction of patch reefs post-dated the barrier reef formation. The mature barrier reef provided calm conditions inside the lagoon, which then led to the construction of patch reefs and fringing reefs. Sea-level changes deduced from the accumulation curves show rapid rise before 7200 cal. year BP followed by a slight rise of 4 m at its maximum. This change in sea-level rise rate inspired the change in reef facies from branching Acropora to reef crest.

In order to investigate Pacific atoll lagoonal facies and temporal evolution, we collected and analyzed surface and core sediments from three Pacific atoll lagoons of various sizes and depths (Kayangel of Palau Islands, Enewetak and Majuro of the Marshall Islands). The lagoons were divided into three facies: Calcarina facies, Calcarina–Heterostegina mixed facies and Heterostegina facies. These were based on the presence or absence of the tests of two larger benthic foraminifera, Calcarina and Heterostegina , as indicators of reef flat and deep lagoon environments, respectively. The Calcarina facies is composed of allochthonous reef-derived materials, the Calcarina–Heterostegina mixed facies is a mixture of reef-derived and in situ lagoonal materials, and the Heterostegina facies is composed mainly of in situ lagoonal materials. As both foraminifera are widely distributed in the Western to Central Pacific region, the facies classification presented in this study can be applicable to other Pacific atolls. Based on the results of radiocarbon dating on samples obtained from cores at Majuro lagoon, the accumulation rates of the lagoonal sediments were estimated as 0.65 m kyr −1 . Calcium carbonate production was calculated on the basis of the accumulation rates and density of sediments to be 710 g CaCO 3 m −2 yr −1 .