45 results on '"Ravi K, Kukkadapu"'
Search Results
2. Lignin-enhanced reduction of structural Fe(III) in nontronite: Dual roles of lignin as electron shuttle and donor
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Hailiang Dong, Shuisong Ni, Yizhi Sheng, Gary A. Lorigan, Ravi K. Kukkadapu, Robert M. McCarrick, Jinglong Hu, Simin Zhao, Qiang Zeng, Ethan Coffin, and Andre J. Sommer
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010504 meteorology & atmospheric sciences ,biology ,Radical ,fungi ,Inorganic chemistry ,technology, industry, and agriculture ,food and beverages ,Electron donor ,Nontronite ,macromolecular substances ,Shewanella putrefaciens ,010502 geochemistry & geophysics ,biology.organism_classification ,complex mixtures ,01 natural sciences ,Electron transfer ,chemistry.chemical_compound ,chemistry ,Geochemistry and Petrology ,Lignin ,Clay minerals ,Dissolution ,0105 earth and related environmental sciences - Abstract
Lignin is a major component of plant-derived soil organic matter (SOM) in soils and sediments. Fe-bearing clay minerals are widely distributed in these environments and often co-exist with lignin. While previous studies have reported the electron shuttling and donating roles of certain redox-active SOM in the dissimilatory reduction of structural Fe(III) in Fe-bearing clay minerals, the role of lignin in this process remains unknown. Here we studied this role by incubating an Fe-rich smectite (nontronite NAu-2) with two types of lignin (soluble and insoluble) in the absence and presence of an Fe(III)-reducing bacterium Shewanella putrefaciens CN32 under anaerobic condition. Lactate was added in some experiments as an extra electron donor. The results demonstrated that both soluble and insoluble lignins abiotically reduced structural Fe(III) in NAu-2. The reduction extent was proportional to lignin concentration. After abiotic reaction, lignin served as either electron shuttle or electron donor in the presence of CN32: (1) When lactate was present, lignin served as an electron shuttle to enhance the rate of Fe(III) reduction; (2) When lactate was absent, lignin served as an electron donor for Fe(III) reduction. Although the ultimate biotic Fe(III) reduction extents were similar in the presence of either soluble or insoluble lignin, the reduction rates with soluble lignin were higher than those with insoluble lignin, likely owing to their different electron transfer mechanisms. After interaction with NAu-2 and/or CN32, soluble lignin structure largely remained intact, but with some decreases of humic/fulvic acid-like and protein-like compounds, aromatic functional groups (e.g., C H, C O, COOH), and aliphatic/aromatic compounds. An increase of semiquinone-like organic radicals was observed after lignin interaction with NAu-2. These chemical changes of lignin were likely coupled with the reduction of structural Fe(III) in nontronite. Upon reduction, the nontronite did not display much dissolution and mineral transformation. The findings of this study provide insights into the role of lignin in promoting mineral-microbe interactions and have significant implications for coupled Fe and C biogeochemical cycles in soils and sediments.
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- 2021
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3. Electron transfer between sorbed Fe(II) and structural Fe(III) in smectites and its effect on nitrate-dependent iron oxidation by Pseudogulbenkiania sp. strain 2002
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Hailiang Dong, Libor Kovarik, Qusheng Jin, Ravi K. Kukkadapu, and Li Zhang
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Aqueous solution ,Goethite ,010504 meteorology & atmospheric sciences ,Inorganic chemistry ,Nontronite ,Sorption ,010502 geochemistry & geophysics ,01 natural sciences ,Redox ,Electron transfer ,chemistry.chemical_compound ,Montmorillonite ,chemistry ,Geochemistry and Petrology ,visual_art ,visual_art.visual_art_medium ,Clay minerals ,0105 earth and related environmental sciences - Abstract
Iron redox cycling in clay minerals plays important roles in nutrient cycling and contamination migration in soils and sediments. Studies have shown interfacial electron transfer (IET) between sorbed Fe(II) and structural Fe(III) in clays, but the impact of IET on biological redox reactions has not been investigated. Here we studied the impact of such IET process on an example redox reaction, i.e. coupled Fe(II) oxidation and nitrate reduction, in the presence of the nitrate-reducing bacterium Pseudogulbenkiania sp. strain 2002. Aqueous Fe2+ was sorbed to basal surface (pH 6) and edge sites (pH 8) of nontronite (NAu-2) and montmorillonite (SWy-2). The amount of Fe(II) sorption was lower at pH 6 than at pH 8. At pH 6, the extent of IET from basal Fe(II) to structural Fe(III) was higher in SWy-2 than in NAu-2, resulting in a higher proportion of structural Fe(II) in SWy-2. Because structural Fe(II) is more reactive than basal Fe(II), such IET resulted in a higher reactivity of SWy-2-associated Fe(II) than that of NAu-2-associated Fe(II) towards biologically-mediated nitrate reduction. At pH 8, extensive IET from highly reactive edge-Fe(II) to structural Fe(III) in NAu-2 resulted in formation of structural Fe(II) and Fe oxides, which lowered the reactivity of NAu-2-associated Fe(II). In contrast, due to limited IET in SWy-2 at pH 8, a large fraction of sorbed Fe(II) remained and was associated with SWy-2 and/or goethite/mixed Fe(II)-Fe(III) nanoparticles, which were highly reactive. As a result, SWy-2-associated Fe(II) is more reactive than NAu-2-associated Fe(II) at pH 8. The results of this study have important implications for understanding clay redox reactions in such environments where clay minerals and aqueous Fe2+ are in contact and IET occurs.
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- 2019
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4. Root-driven weathering impacts on mineral-organic associations in deep soils over pedogenic time scales
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Malak M. Tfaily, Ravi K. Kukkadapu, Kristin Boye, Corey R. Lawrence, Marco Keiluweit, Morris E. Jones, Marjorie S. Schulz, and Mariela Garcia Arredondo
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Rhizosphere ,Goethite ,Pedogenesis ,Geochemistry and Petrology ,Chemistry ,Chronosequence ,Soil organic matter ,Environmental chemistry ,visual_art ,Soil water ,visual_art.visual_art_medium ,Weathering ,Soil carbon - Abstract
Plant roots are critical weathering agents in deep soils, yet the impact of resulting mineral transformations on the vast deep soil carbon (C) reservoir are largely unknown. Root-driven weathering of primary minerals may cause the formation of reactive secondary minerals, which protect mineral-organic associations (MOAs) for centuries or millennia. Conversely, root-driven weathering may also transform secondary minerals, potentially enhancing the bioavailability of C previously protected in MOAs. Here we examined the impact of root-driven weathering on MOAs and their capacity to store C over pedogenic time scales. To accomplish this, we examined deep horizons (100–160 cm) that experienced root-driven weathering in four soils of increasing ages (65–226 kyr) of the Santa Cruz marine terrace chronosequence. Specifically, we compared discrete rhizosphere zones subject to root-driven weathering, with adjacent zones that experienced no root growth. Using a combination of radiocarbon, mass spectrometry, 57Fe Mossbauer spectroscopy, high-resolution mass spectrometry, and X-ray spectromicroscopy approaches, we characterized transformations of MOAs in relation to changes in C content, Δ14C values, and chemistry across the chronosequence. We found that the onset of root-driven weathering (65–90 kyr) increased the amount of C associated with poorly crystalline iron (Fe) and aluminum (Al) phases, particularly highly disordered nano-particulate goethite (np-goethite). This increase coincided with greater C concentrations, lower Δ14C values, and greater abundance of what is likely microbially-derived C. Continued root-driven weathering (137–226 kyr) did not significantly change the amount of C associated with crystalline Fe and Al phases, but resulted in a decline in the amount of C associated with poorly crystalline Fe and Al phases. This decline coincided with a decrease in C concentrations, an increase in Δ14C values, and a shift toward plant-derived C. In contrast, soil not affected by root-driven weathering showed comparatively low amounts of C bound to poorly crystalline Fe and Al phases regardless of soil age and, correspondingly, lower C concentrations. Our results demonstrate that root-driven formation and disruption of MOAs are direct controls on both C accrual and loss in deep soil. This finding suggests that root impacts on soil C storage are dependent on soil weathering stage, a consideration that is critical for future predictions of the vulnerability of deep soil C to global change.
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- 2019
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5. Changes in Sedimentary Phosphorus Burial Following Artificial Eutrophication of Lake 227, Experimental Lakes Area, Ontario, Canada
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Johan A. Wiklund, H. Chessell, Thilo Behrends, N. Ansems, David W. O'Connell, Roland I. Hall, Barbara J. Cade-Menun, Deb P. Jaisi, P. Van Cappellen, Yongfeng Hu, Ravi K. Kukkadapu, Diane M. Orihel, Geochemistry, and Bio-, hydro-, and environmental geochemistry
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Atmospheric Science ,010504 meteorology & atmospheric sciences ,Artificial fertilization ,advanced spectroscopy ,chemistry.chemical_element ,Soil Science ,Aquatic Science ,Oceanography ,01 natural sciences ,water quality ,Water column ,Geochemistry and Petrology ,Epilimnion ,Earth and Planetary Sciences (miscellaneous) ,Phosphorus cycle ,legacy phosphorus ,0105 earth and related environmental sciences ,Water Science and Technology ,Earth-Surface Processes ,Ecology ,Phosphorus ,Palaeontology ,Paleontology ,Sediment ,phosphorus speciation ,Forestry ,PE&RC ,Bodemgeografie en Landschap ,eutrophication ,Geophysics ,chemistry ,Space and Planetary Science ,Environmental chemistry ,Soil Geography and Landscape ,Hypolimnion ,phosphorus cycle ,Eutrophication - Abstract
Lake 227 of the Experimental Lakes Area (ELA) in Ontario, Canada, has been fertilized with phosphorus (P) since 1969, which resulted in a rapid transition from oligotrophic to eutrophic conditions. Sediment cores collected from the oxygenated epilimnion, and the mostly anoxic hypolimnion of this unique lake contain a historical record of the changes in sediment P speciation and burial rates across the trophic transition. To elucidate these changes, results of chemical extractions were combined with 210Pb sediment dating, and with 31P NMR, Mössbauer, and XANES spectroscopies. Prior to 1969, organic P (POrg) was the major sedimentary P sink in Lake 227. Eutrophication of the lake coincided with marked increases in the burial rate of total P (TP), as well as in the relative contribution of the NaHCO3-extractable P pool (humic-bound P, PHum). Together, PHum and POrg account for ≥70% of total P burial in the sediments deposited since artificial fertilization started. The PHum fraction likely comprises phosphate complexes with humic substances. The strong linear correlation between P and iron (Fe) extracted by NaHCO3 implies a close association of the two elements in the humic fraction. Mössbauer and XANES spectra further indicate that most Fe in the post-1969 sediments remained in the Fe (III) oxidation state, which is attributed to the stabilization of reducible Fe by organic matter, in part via the formation of phosphate-Fe (III)-humic complexes. Importantly, our results show that the eutrophication experimentation of Lake 227 caused the accumulation of a large reservoir of reactive sediment P, which may continue to fuel internal P loading to the water column once artificial fertilization is terminated.
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- 2020
6. Iron and Arsenic Speciation During As(III) Oxidation by Manganese Oxides in the Presence of Fe(II): Molecular-Level Characterization Using XAFS, Mössbauer, and TEM Analysis
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Yun Wu, Kenneth J. T. Livi, Wei Li, Ravi K. Kukkadapu, Donald L. Sparks, and Wenqian Xu
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Atmospheric Science ,X-ray absorption spectroscopy ,Birnessite ,Extended X-ray absorption fine structure ,Absorption spectroscopy ,Chemistry ,Inorganic chemistry ,chemistry.chemical_element ,010501 environmental sciences ,010502 geochemistry & geophysics ,01 natural sciences ,XANES ,X-ray absorption fine structure ,Space and Planetary Science ,Geochemistry and Petrology ,Spectroscopy ,Arsenic ,0105 earth and related environmental sciences - Abstract
The redox state and speciation of the metalloid arsenic (As) determine its toxicity and mobility. Knowledge of biogeochemical processes influencing the As redox state is therefore important to understand and predict its environmental behavior. Many previous studies examined As(III) oxidation by various Mn-oxides, but little is known concerning the environmental influences (e.g. co-existing ions) on the process. In this study, we investigated the mechanisms of As(III) oxidation by a poorly crystalline hexagonal birnessite (δ-MnO2) in the presence of Fe(II) using X-ray absorption spectroscopy (XAS), Mossbauer spectroscopy and transmission electron microscopy (TEM) coupled with energy-dispersive X-ray spectroscopy (EDS). The K-edge X-ray absorption near edge spectroscopy (XANES) analysis revealed that, at low Fe(II) concentration (100 μM), As(V) was the predominant As species on the solid phase, while at higher Fe(II) concentrations (200-1000 μM), both As(III) and As(V) were sorbed on the solid phase. As K-e...
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- 2018
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7. Synthesis and characterization of redox-active ferric nontronite
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Rachel Elizabeth Washington, Kateryna Artyushkova, Chengjun Sun, Jessica Nicole Kruichak, Anastasia G. Ilgen, José M. Cerrato, Matthew T. Janish, J.M. Argo, D.R. Dunphy, and Ravi K. Kukkadapu
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Mineral ,Inorganic chemistry ,chemistry.chemical_element ,020101 civil engineering ,Geology ,Nontronite ,02 engineering and technology ,010501 environmental sciences ,01 natural sciences ,Redox ,0201 civil engineering ,Catalysis ,chemistry ,Geochemistry and Petrology ,medicine ,Ferric ,Reactivity (chemistry) ,Clay minerals ,Arsenic ,0105 earth and related environmental sciences ,medicine.drug - Abstract
Heterogeneous redox reactions on clay mineral surfaces control mobility and bioavailability of redox-sensitive nutrients and contaminants. Iron (Fe) residing in clay mineral structures can either catalyze or directly participate in redox reactions; however, chemical controls over its reactivity are not fully understood. In our previous work we demonstrated that converting a minor portion of Fe(III) to Fe(II) (partial reduction) in the octahedral sheet of natural Fe-rich clay mineral nontronite (NAu-1) activates its surface, making it redox-active. In this study we produced and characterized synthetic ferric nontronite (SIP), highlighting structural and chemical similarities and differences between this synthetic nontronite and its natural counterpart NAu-1, and probed whether mineral surface is redox-active by reacting it with arsenic As(III) under oxic and anoxic conditions. We demonstrate that synthetic nontronite SIP undergoes the same activation as natural nontronite NAu-1 following the partial reduction treatment. Similar to NAu-1, SIP oxidized As(III) to As(V) under both oxic (catalytic pathway) and anoxic (direct oxidation) conditions. The similar reactivity trends observed for synthetic nontronite and its natural counterpart make SIP an appropriate analog for laboratory studies. The development of chemically pure analogs for ubiquitous soil minerals will allow for systematic research of the fundamental properties of these minerals.
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- 2017
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8. Efficacy of acetate-amended biostimulation for uranium sequestration: Combined analysis of sediment/groundwater geochemistry and bacterial community structure
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Gargi Singh, Jie Xu, Harish Veeramani, Nikolla P. Qafoku, Maria V. Riquelme, Ravi K. Kukkadapu, Amy Pruden, Michael F. Hochella, and Brandy N. Gartman
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0301 basic medicine ,Biogeochemical cycle ,biology ,030106 microbiology ,Amendment ,Geochemistry ,Sediment ,chemistry.chemical_element ,010501 environmental sciences ,Uranium ,biology.organism_classification ,complex mixtures ,01 natural sciences ,Pollution ,Biostimulation ,03 medical and health sciences ,chemistry ,Geochemistry and Petrology ,Environmental Chemistry ,Environmental science ,Sulfate-reducing bacteria ,Groundwater ,0105 earth and related environmental sciences ,Geobacter - Abstract
Systematic flow-through column experiments were conducted using sediments and ground water collected from different subsurface localities at the U.S. Department of Energy's Integrated Field Research Challenge site in Rifle, Colorado. The principal purpose of this study is to gain a better understanding of the interactive effects of groundwater geochemistry, sediment mineralogy, and indigenous bacterial community structures on the efficacy of uranium removal from the groundwater with/without acetate amendment. Overall, we find that the subtle variations in the sediments' mineralogy, redox conditions, as well as contents of metal(loid) co-contaminants showed a pronounced effect on the associated bacterial population and composition, which mainly determines the system's performance with respect to uranium removal. Positive relationship was identified between the abundance of dissimilatory sulfate-reduction genes (i.e., drsA), markers of sulfate-reducing bacteria, and the sediments' propensity to sequester aqueous uranium. In contrast, no obvious connections were observed between the abundance of common iron-reducing bacteria, e.g., Geobacter spp., and the sediments' ability to sequester uranium. In the sediments with low bacterial biomass and the absence of sulfate-reducing conditions, abiotic adsorption onto mineral surfaces such as phyllosilicates likely played a relatively major role in the attenuation of aqueous uranium; however, in these scenarios, acetate amendment induced detectable rebounds in the effluent uranium concentrations. The results of this study suggest that immobilization of uranium can be achieved under predominantly sulfate-reducing conditions, and provide insight into the integrated roles of various biogeochemical components in long-term uranium sequestration.
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- 2017
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9. Fe(II) sorption on pyrophyllite: Effect of structural Fe(III) (impurity) in pyrophyllite on nature of layered double hydroxide (LDH) secondary mineral formation
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Ravi K. Kukkadapu, Evert J. Elzinga, Wei Li, Donald L. Sparks, and Autumn N. Starcher
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X-ray absorption spectroscopy ,Aqueous solution ,Absorption spectroscopy ,Inorganic chemistry ,Sorption ,Geology ,010501 environmental sciences ,010502 geochemistry & geophysics ,01 natural sciences ,Redox ,chemistry.chemical_compound ,chemistry ,Geochemistry and Petrology ,visual_art ,Mössbauer spectroscopy ,visual_art.visual_art_medium ,Hydroxide ,0105 earth and related environmental sciences ,Pyrophyllite - Abstract
Fe(II)-Al(III)-LDH (layered double hydroxide) phases have been shown to form from reactions of aqueous Fe(II) with Fe-free Al-bearing minerals (phyllosilicate/clays and Al-oxides). To our knowledge, however, the effect of small amounts of structural Fe(III) in natural clays on such reactions were not studied. In this study to understand the role of structural Fe(III) in clay, laboratory batch studies with pyrophyllite (10 g/L), an Al-bearing phyllosilicate, containing small amounts of structural Fe(III) and 0.8 mM and 3 mM Fe(II) (both natural and enriched in 57 Fe) were carried out at pH 7.5 under anaerobic conditions (4% H 2 –96% N 2 atmosphere). Samples were taken up to 4 weeks for analysis by Fe-X-ray absorption spectroscopy and 57 Fe Mossbauer spectroscopy. In addition to the precipitation of Fe(II)-Al(III)-LDH phases as observed in earlier studies with pure minerals (no Fe(III) impurities in the minerals), the analyses indicated the formation of small amounts of Fe(III) containing solids, most probably a hybrid Fe(II)-Al(III)/Fe(III)-LDH phase. The mechanism of Fe(II) oxidation was not apparent but most likely was due to either interfacial electron transfer from the spiked Fe(II) to the structural Fe(III) and/or surface-sorption-induced electron-transfer from the sorbed Fe(II) to the clay lattice. This research provides evidence for the formation of both Fe(II)-Al(III)-LDH and Fe(II)-Fe(III)/Al(III)-LDH-like phases during reactions of Fe(II) in systems that mimic the natural environments. Better understanding Fe phase formation in complex laboratory studies will improve models of natural redox systems.
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- 2016
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10. Structure and thermodynamics of uranium-containing iron garnets
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Hongwu Xu, Stephen R. Sutton, Antonio Lanzirotti, Eugene S. Ilton, Xiaofeng Guo, Matthew Newville, Ravi K. Kukkadapu, Alexandra Navrotsky, and Mark H. Engelhard
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X-ray absorption spectroscopy ,Oxide ,Thorium ,chemistry.chemical_element ,02 engineering and technology ,Actinide ,Natural uranium ,Uranium ,010502 geochemistry & geophysics ,021001 nanoscience & nanotechnology ,01 natural sciences ,Standard enthalpy of formation ,Cerium ,chemistry.chemical_compound ,chemistry ,Geochemistry and Petrology ,Physical chemistry ,0210 nano-technology ,0105 earth and related environmental sciences ,Nuclear chemistry - Abstract
Use of crystalline garnet as a waste form phase appears to be advantageous for accommodating actinides from nuclear waste. Previous studies show that large amounts of uranium (U) and its analogues such as cerium (Ce) and thorium (Th) can be incorporated into the garnet structure. In this study, we synthesized U loaded garnet phases, Ca3UxZr2−xFe3O12 (x = 0.5–0.7), along with the endmember phase, Ca3(Zr2)SiFe3+2O12, for comparison. The oxidation states of U were determined by X-ray photoelectron and absorption spectroscopies, revealing the presence of mixed pentavalent and hexavalent uranium in the phases with x = 0.6 and 0.7. The oxidation states and coordination environments of Fe were measured using transmission 57Fe-Mossbauer spectroscopy, which shows that all iron is tetrahedrally coordinated Fe3+. U substitution had a significant effect on local environments, the extent of U substitution within this range had a minimal effect on the structure, and unlike in the x = 0 sample, Fe exists in two different environments in the substituted garnets. The enthalpies of formation of garnet phases from constituent oxides and elements were first time determined by high temperature oxide melt solution calorimetry. The results indicate that these substituted garnets are thermodynamically stable under reducing conditions. Our structural and thermodynamic analysis further provides explanation for the formation of natural uranium garnet, elbrusite-(Zr), and supports the potential use of Ca3UxZr2−xFe3O12 as viable waste form phases for U and other actinides.
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- 2016
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11. Uranium fate in Hanford sediment altered by simulated acid waste solutions
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Ravi K. Kukkadapu, Nikolla P. Qafoku, Brandy N. Gartman, Michael J. Truex, James E. Szecsody, Dawn M. Wellman, and Zheming Wang
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Aqueous solution ,Chemistry ,Sediment ,chemistry.chemical_element ,Uranium ,Uranyl ,Pollution ,XANES ,chemistry.chemical_compound ,Geochemistry and Petrology ,Ionic strength ,Environmental chemistry ,Mössbauer spectroscopy ,Environmental Chemistry ,Spectroscopy ,Nuclear chemistry - Abstract
Infiltration of aqueous acidic waste to the subsurface may induce conditions that alter contaminant transport. Experiments were conducted to examine the effects of low pore water pH and associated changes to sediment properties on U(VI) behavior in sediments. Macroscopic batch experiments were combined with a variety of bulk characterization studies (Mossbauer and laser spectroscopy), micron-scale inspections (μ-XRF), and molecular scale interrogations (XANES) with the objectives to: 1) determine the extent of U(VI) partitioning to Hanford sediments exposed to acidic waste simulants and held at pH = 2, pH = 5, or under neutral conditions (pH = 8) at varying ionic strength, and in the presence of air [bench-top (BT) experiments] or in the absence of air [glove-box (GB) experiments]; and 2) determine the uranium micron-scale solid phase and associated valence state resulting from the experimental conditions. The investigation showed minimal overall changes in Fe mineralogy as a result of sediment exposure to acid solutions, but an increase in the highly reactive nano Fe fraction of the sediment. Greater uranium partitioning was observed at pH = 5 than at pH = 2 and 8. The μ-XRF inspections and XANES analyses confirmed that high concentration areas on sediment surfaces were rich in U(VI) in the BT experiments, and both U(IV) and U(VI) in the GB experiments. The laser spectroscopy data showed that uranyl phosphates {e.g., metaautunite [Ca(UO2)2(PO4)2·10–12H2O] and phosphuranylite [KCa(H3O)3(UO2)7(PO4)4O4·8H2O]} may have formed in the BT experiments. In the GB experiments, in addition to U(IV) phases, U(VI) phases may have also formed similar to those that are naturally present in the sediment, but at higher concentrations. The results provide insights about U(VI) mobility beneath acidic waste disposal sites.
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- 2015
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12. Mobilization of metals from Eau Claire siltstone and the impact of oxygen under geological carbon dioxide sequestration conditions
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Eirik J. Krogstad, Hongbo Shao, Kirk J. Cantrell, Ravi K. Kukkadapu, and Matthew K. Newburn
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Chemistry ,Fluorapatite ,Dolomite ,engineering.material ,Phosphate ,Ferrihydrite ,chemistry.chemical_compound ,Adsorption ,Geochemistry and Petrology ,Environmental chemistry ,engineering ,Trace metal ,Pyrite ,Dissolution - Abstract
To investigate the impact of O2 as an impurity co-injected with CO2 on geochemical interactions, especially trace metal mobilization from a geological CO2 sequestration (GCS) reservoir rock, batch studies were conducted with Eau Claire siltstone collected from CO2 sequestration sites. The rock was reacted with synthetic brines in contact with either 100% CO2 or a mixture of 95 mol% CO2-5 mol% O2 at 10.1 MPa and 75 °C. Both microscopic and spectroscopic measurements, including 57Fe-Mossbauer spectroscopy, Laser Ablation-Inductively Coupled Plasma-Mass Spectrometry, powder X-ray diffraction, scanning electron microscopy-energy dispersive X-ray spectroscopy, and chemical extraction were combined in this study to investigate reaction mechanisms. The Eau Claire siltstone contains quartz (52 wt%), fluorapatite (40%), and aluminosilicate (5%) as major components, and dolomite (2%), pyrite (1%), and small-particle-/poorly-crystalline Fe-oxides as minor components. With the introduction of CO2 into the reaction vessel containing rock and brine, the leaching of small amounts of fluorapatite, aluminosilicate, and dolomite occurred. Trace metals of environmental concern, including Pb, As, Cd, and Cu were detected in the leachate with concentrations up to 400 ppb in the CO2–brine–rock reaction system within 30 days. In the presence of O2, the oxidation of Fe(II) and the consequent changes in the reaction system, including a reduction in pH, significantly enhanced the mobilization of Pb, Cd, and Cu, whereas As concentrations decreased, compared with the reaction system without O2. The presence of O2 resulted in the formation of secondary Fe-oxides which appear to be Fe(II)-substituted P-containing ferrihydrite. Although the rock contained only 1.04 wt% total Fe, oxidative dissolution of pyrite, leaching and oxidation of structural Fe(II) in fluorapatite, and precipitation of Fe-oxides significantly decreased the pH in brine with O2 (pH 3.3–3.7), compared with the reaction system without O2 (pH 4.2–4.4). In the CO2–rock–brine system without O2, the majority of As remained in the rock, with about 1.1% of the total As being released from intrinsic Fe-oxides to the aqueous phase. The release behavior of As to solution was consistent with competitive adsorption between phosphate/fluoride and As on Fe-oxide surfaces. In the presence of O2 the mobility of As was reduced due to enhanced adsorption onto both intrinsic and secondary Fe-oxide surfaces. When O2 was present, the dominant species in solution was the less toxic As(V). This work will advance our understanding of the geochemical reaction mechanisms that occur under GCS conditions and help to evaluate the risks associated with geological CO2 sequestration.
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- 2014
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13. Geochemical and mineralogical investigation of uranium in multi-element contaminated, organic-rich subsurface sediment
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Bruce W. Arey, Kenneth H. Williams, John R. Bargar, Paula J. Mouser, Brandy N. Gartman, Nikolla P. Qafoku, Steve Yabusaki, Philip E. Long, Noémie Janot, Ravi K. Kukkadapu, Steve M. Heald, Pacific Northwest National Laboratory (PNNL), Earth Science Division [LBNL Berkeley] (ESD), Lawrence Berkeley National Laboratory [Berkeley] (LBNL), Ohio State University [Columbus] (OSU), Argonne National Laboratory [Lemont] (ANL), Stanford Synchrotron Radiation Lightsource (SSRL SLAC), SLAC National Accelerator Laboratory (SLAC), and Stanford University-Stanford University
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Total organic carbon ,Sediment ,chemistry.chemical_element ,Mineralogy ,Sorption ,Contamination ,Uranium ,Pollution ,Redox ,6. Clean water ,Siderite ,chemistry.chemical_compound ,chemistry ,[SDU.STU.GC]Sciences of the Universe [physics]/Earth Sciences/Geochemistry ,13. Climate action ,Geochemistry and Petrology ,Environmental chemistry ,Environmental Chemistry ,Groundwater ,[SDU.STU.MI]Sciences of the Universe [physics]/Earth Sciences/Mineralogy - Abstract
International audience; Subsurface regions of alluvial sediments characterized by an abundance of refractory or lignitic organic carbon compounds and reduced Fe and S bearing minerals, which are referred to as naturally reduced zones (NRZ), are present at the Integrated Field Research Challenge site in Rifle, CO (a former U mill site), and other contaminated subsurface sites. A study was conducted to demonstrate that the NRZ contains a variety of contaminants and unique minerals and potential contaminant hosts, investigate micron-scale spatial association of U with other co-contaminants, and determine solid phase-bounded U valence state and phase identity. The NRZ sediment had significant solid phase concentrations of U and other co-contaminants suggesting competing sorption reactions and complex temporal variations in dissolved contaminant concentrations in response to transient redox conditions, compared to single contaminant systems. The NRZ sediment had a remarkable assortment of potential contaminant hosts, such as Fe oxides, siderite, Fe(II) bearing clays, rare solids such as ZnS framboids and CuSe, and, potentially, chemically complex sulfides. Micron-scale inspections of the solid phase showed that U was spatially associated with other co-contaminants. High concentration, multi-contaminant, micron size (ca. 5–30 μm) areas of mainly U(IV) (53–100%) which occurred as biogenic UO2 (82%), or biomass – bound monomeric U(IV) (18%), were discovered within the sediment matrix confirming that biotically induced reduction and subsequent sequestration of contaminant U(VI) via natural attenuation occurred in this NRZ. A combination of assorted solid phase species and an abundance of redox-sensitive constituents may slow U(IV) oxidation rates, effectively enhancing the stability of U(IV) sequestered via natural attenuation, impeding rapid U flushing, and turning NRZs into sinks and long-term, slow-release sources of U contamination to groundwater.
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- 2014
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14. Biological oxidation of Fe(II) in reduced nontronite coupled with nitrate reduction by Pseudogulbenkiania sp. Strain 2002
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Hailiang Dong, Deng Liu, Richard E. Edelmann, Jing Zhang, Abinash Agrawal, Ravi K. Kukkadapu, and Linduo Zhao
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chemistry.chemical_classification ,Ferrihydrite ,chemistry.chemical_compound ,chemistry ,Nitrate ,Geochemistry and Petrology ,Inorganic chemistry ,Nontronite ,Vivianite ,Electron donor ,Electron acceptor ,Nitrite ,Clay minerals - Abstract
The importance of microbial nitrate-dependent Fe(II) oxidation to iron biogeochemistry is well recognized. Past research has focused on oxidation of aqueous Fe 2+ and structural Fe(II) in oxides, carbonates, and phosphate, but the importance of structural Fe(II) in phyllosilicates in this reaction is only recently studied. However, the effect of clay mineralogy on the rate and the mechanism of the reaction, and subsequent mineralogical end products are still poorly known. The objective of this research was to study the coupled process of microbial oxidation of Fe(II) in clay mineral nontronite (NAu-2), and nitrate reduction by Pseudogulbenkiania species strain 2002, and to determine mineralogical changes associated with this process. Bio-oxidation experiments were conducted using Fe(II) in microbially reduced nontronite as electron donor and nitrate as electron acceptor in bicarbonate-buffered medium under both growth and nongrowth conditions to investigate cell growth on this process. The extents of Fe(II) oxidation and nitrate reduction were measured by wet chemical methods. X-ray diffraction (XRD), scanning and transmission electron microscopy (SEM and TEM), and 57 Fe-Mossbauer spectroscopy were used to observe mineralogical changes associated with Fe(III) reduction and Fe(II) oxidation in NAu-2. The bio-oxidation extent under growth and nongrowth conditions reached 67% and 57%, respectively. Over the same time period, nitrate was completely reduced under both conditions to nitrogen gas (N 2 ), via an intermediate product nitrite. Abiotic oxidation by nitrite partly accelerated Fe(II) oxidation rate under the growth condition. The oxidized Fe(III) largely remained in the nontronite structure, but secondary minerals such as vivianite, ferrihydrite, and magnetite formed depending on specific experimental conditions. The results of this study highlight the importance of iron-bearing clay minerals in the global nitrogen cycle with potential applications in nitrate removal in natural environments.
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- 2013
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15. Abiotic U(VI) reduction by sorbed Fe(II) on natural sediments
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John R. Bargar, Kenneth H. Williams, David M. Singer, Patricia M. Fox, James A. Davis, and Ravi K. Kukkadapu
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Biostimulation ,Abiotic component ,XANES Spectroscopy ,Speciation ,Aqueous solution ,Geochemistry and Petrology ,Chemistry ,media_common.quotation_subject ,Inorganic chemistry ,Mössbauer spectroscopy ,Limited capacity ,media_common - Abstract
Laboratory experiments were performed as a function of aqueous Fe(II) concentration to determine the uptake and oxidation of Fe(II), and Fe(II)-mediated abiotic reduction of U(VI) by aquifer sediments from the DOE Rifle field research site in Colorado, USA. Mossbauer analysis of the sediments spiked with aqueous 57Fe(II) showed that 57Fe(II) was oxidized on the mineral surfaces to 57Fe(III) and most likely formed a nano-particulate Fe(III)-oxide or ferrihydrite-like phase. The extent of 57Fe oxidation decreased with increasing 57Fe(II) uptake, such that 98% was oxidized at 7.3 μmol/g Fe and 41% at 39.6 μmol/g Fe, indicating that the sediments had a limited capacity for oxidation of Fe(II). Abiotic U(VI) reduction was observed by XANES spectroscopy only when the Fe(II) uptake was greater than approximately 20 μmol/g and surface-bound Fe(II) was present, possibly as oligomeric Fe(II) surface species. The degree of U(VI) reduction increased with increasing Fe(II)-loading above this level to a maximum of 18% and 36% U(IV) at pH 7.2 (40.7 μmol/g Fe) and 8.3 (56.1 μmol/g Fe), respectively in the presence of 400 ppm CO2. Greater U(VI) reduction was observed in CO2-free systems [up to 44% and 54% at pH 7.2 (17.3 μmol/g Fe) and 8.3 (54.8 μmol/g Fe), respectively] compared to 400 ppm CO2 systems, presumably due to differences in aqueous U(VI) speciation. While pH affects the amount of Fe(II) uptake onto the solid phase, with greater Fe(II) uptake at higher pH, similar amounts of U(VI) reduction were observed at pH 7.2 and 8.3 for a similar Fe(II) uptake. Thus, it appears that abiotic U(VI) reduction is controlled primarily by sorbed Fe(II) concentration and aqueous U(VI) speciation. The range of Fe(II) loadings tested in this study are within the range observed in biostimulation experiments at the Rifle site, suggesting that Fe(II)-mediated abiotic U(VI) reduction could play a significant role in field settings.
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- 2013
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16. Oxidative dissolution of UO2 in a simulated groundwater containing synthetic nanocrystalline mackinawite
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Yuqiang Bi, Sung Pil Hyun, Kim F. Hayes, and Ravi K. Kukkadapu
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Chemistry ,Inorganic chemistry ,chemistry.chemical_element ,Iron sulfide ,engineering.material ,Redox ,Oxygen ,Sulfur ,chemistry.chemical_compound ,Adsorption ,Mackinawite ,Geochemistry and Petrology ,engineering ,Lepidocrocite ,Dissolution - Abstract
The long-term success of in situ reductive immobilization of uranium (U) depends on the stability of U(IV) precipitates (e.g., uraninite) in the presence of natural oxidants, such as oxygen, Fe(III) hydroxides, and nitrite. Field and laboratory studies have implicated iron sulfide minerals as redox buffers or oxidant scavengers that may slow oxidation of reduced U(IV) solid phases. Yet, the inhibition mechanism(s) and reaction rates of uraninite (UO2) oxidative dissolution by oxic species such as oxygen in FeS-bearing systems remain largely unresolved. To address this knowledge gap, abiotic batch experiments were conducted with synthetic UO2 in the presence and absence of synthetic mackinawite (FeS) under simulated groundwater conditions of pH = 7, P O 2 = 0.02 atm, and P CO 2 = 0.05 atm. The kinetic profiles of dissolved uranium indicate that FeS inhibited UO2 dissolution for about 51 h by effectively scavenging oxygen and keeping dissolved oxygen (DO) low. During this time period, oxidation of structural Fe(II) and S(-II) of FeS were found to control the DO levels, leading to the formation of iron oxyhydroxides and elemental sulfur, respectively, as verified by X-ray diffraction (XRD), Mossbauer, and X-ray absorption spectroscopy (XAS). After FeS was depleted due to oxidation, DO levels increased and UO2 oxidative dissolution occurred at an initial rate of rm = 1.2 ± 0.4 × 10−8 mol g−1 s−1, higher than rm = 5.4 ± 0.3 × 10−9 mol g−1 s−1 in the control experiment where FeS was absent. XAS analysis confirmed that soluble U(VI)-carbonato complexes were adsorbed by iron oxyhydroxides (i.e., nanogoethite and lepidocrocite) formed from FeS oxidation, which provided a sink for U(VI) retention. This work reveals that both the oxygen scavenging by FeS and the adsorption of U(VI) to FeS oxidation products may be important in U reductive immobilization systems subject to redox cycling events.
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- 2013
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17. Fayalite dissolution and siderite formation in water-saturated supercritical CO2
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Andrew R. Felmy, Ravi K. Kukkadapu, Eugene S. Ilton, Odeta Qafoku, Libor Kovarik, Bruce W. Arey, and Jiri Tucek
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Olivine ,Mineral ,Scanning electron microscope ,Mineralogy ,Geology ,engineering.material ,Supercritical fluid ,Siderite ,chemistry.chemical_compound ,chemistry ,Chemical engineering ,Geochemistry and Petrology ,engineering ,Fayalite ,High-resolution transmission electron microscopy ,Dissolution - Abstract
Olivines, significant constituents of basaltic rocks, have the potential to immobilize permanently CO2 after it is injected in the deep subsurface, due to carbonation reactions occurring between CO2 and the host rock. To investigate the reactions of fayalitic olivine with supercritical CO2 (scCO2) and formation of mineral carbonates, experiments were conducted at temperatures of 35 °C to 80 °C, 90 atm pressure and anoxic conditions. For every temperature, the dissolution of fayalite was examined both in the presence of liquid water and H2O-saturated scCO2. The experiments were conducted in a high pressure batch reactor at reaction time extending up to 85 days. The newly formed products were characterized using a comprehensive suite of bulk and surface characterization techniques: X-ray diffraction, Transmission/Emission Mossbauer Spectroscopy, Scanning Electron Microscopy coupled with Focused Ion Beam, and High Resolution Transmission Electron Microscopy. Siderite with rhombohedral morphology was formed at 35 °C, 50 °C, and 80 °C in the presence of liquid water and scCO2. In H2O-saturated scCO2, the formation of siderite was confirmed only at high temperature (80 °C). Characterization of reacted samples in H2O-saturated scCO2 with high resolution TEM indicated that siderite formation initiated inside voids created during the initial steps of fayalite dissolution. Later stages of fayalite dissolution result in formation of siderite in layered vertical structures, columns or pyramids with a rhombus base morphology.
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- 2012
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18. Pertechnetate (TcO4−) reduction by reactive ferrous iron forms in naturally anoxic, redox transition zone sediments from the Hanford Site, USA
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Dean A. Moore, Bruce W. Arey, John M. Zachara, Jerry L. Phillips, Charles T. Resch, Libor Kovarik, T. S. Peretyazhko, Igor V. Kutnyakov, Steve M. Heald, Chong M. Wang, and Ravi K. Kukkadapu
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Aqueous solution ,Hanford Site ,Chemistry ,engineering.material ,Redox ,Anoxic waters ,Ferrous ,chemistry.chemical_compound ,Siderite ,Geochemistry and Petrology ,engineering ,Pyrite ,Magnetite ,Nuclear chemistry - Abstract
Technetium is an important environmental contaminant introduced by the processing and disposal of irradiated nuclear fuel and atmospheric nuclear tests. Under oxic conditions technetium is soluble and exists as pertechnatate anion (TcO4−), while under anoxic conditions Tc is usually insoluble and exists as precipitated Tc(IV). Here we investigated abiotic Tc(VII) reduction in mineralogically heterogeneous, Fe(II)-containing sediments. The sediments were collected from a 55 m borehole that sampled a semi-confined aquifer at the Hanford Site, USA that contained a dramatic redox transition zone. One oxic facies (18.0–18.3 m) and five anoxic facies (18.3–18.6 m, 30.8–31.1 m, 39.0–39.3 m, 47.2–47.5 m and 51.5–51.8 m) were selected for this study. Chemical extractions, X-ray diffraction, electron microscopy, and Mossbauer spectroscopy were applied to characterize the Fe(II) mineral suite that included Fe(II)-phyllosilicates, pyrite, magnetite and siderite. The Fe(II) mineral phase distribution differed between the sediments. Sediment suspensions were adjusted to the same 0.5 M HCl extractable Fe(II) concentration (0.6 mM) for Tc(VII) reduction experiments. Total aqueous Fe was below the Feaq detection limit (
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- 2012
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19. Geochemical, mineralogical and microbiological characteristics of sediment from a naturally reduced zone in a uranium-contaminated aquifer
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Aaron D. Peacock, Emily K. Lesher, Linda Figueroa, James A. Davis, Kate M. Campbell, Nikolla P. Qafoku, James F. Ranville, John R. Bargar, Michael J. Wilkins, Philip E. Long, Kenneth H. Williams, and Ravi K. Kukkadapu
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geography ,Radionuclide ,geography.geographical_feature_category ,Groundwater flow ,Sediment ,chemistry.chemical_element ,Aquifer ,Uranium ,Contamination ,Pollution ,Microbial population biology ,chemistry ,Geochemistry and Petrology ,Environmental chemistry ,Environmental Chemistry ,Metalloid ,Geology - Abstract
Localized zones or lenses of naturally reduced sediments have the potential to play a significant role in the fate and transport of redox-sensitive metals and metalloids in aquifers. To assess the mineralogy, microbiology and redox processes that occur in these zones, several cores from a region of naturally occurring reducing conditions in a U-contaminated aquifer (Rifle, CO) were examined. Sediment samples from a transect of cores ranging from oxic/suboxic Rifle aquifer sediment to naturally reduced sediment were analyzed for U and Fe content, oxidation state, and mineralogy; reduced S phases; and solid-phase organic C content using a suite of analytical and spectroscopic techniques on bulk sediment and size fractions. Solid-phase U concentrations were higher in the naturally reduced zone, with a high proportion of the U present as U(IV). The sediments were also elevated in reduced S phases and Fe(II), indicating it is very likely that U(VI), Fe(III), and SO4 reduction has occurred or is occurring in the sediment. The microbial community was assessed using lipid- and DNA-based techniques, and statistical redundancy analysis was performed to determine correlations between the microbial community and the geochemistry. Increased concentrations of solid-phase organic C and biomass in the naturally reduced sediment suggests thatmore » natural bioreduction is stimulated by a zone of increased organic C concentration associated with fine-grained material and lower permeability to groundwater flow. Characterization of the naturally bioreduced sediment provides an understanding of the natural processes that occur in the sediment under reducing conditions and how they may impact natural attenuation of radionuclides and other redox sensitive materials. Results also suggest the importance of recalcitrant organic C for maintaining reducing conditions and U immobilization.« less
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- 2012
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20. Effects of redox cycling of iron in nontronite on reduction of technetium
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Hailiang Dong, Evgenya S. Shelobolina, Jing Zhang, Junjie Yang, Jinwook Kim, and Ravi K. Kukkadapu
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biology ,Chemistry ,Kinetics ,Inorganic chemistry ,Geology ,Nontronite ,Shewanella putrefaciens ,biology.organism_classification ,Redox ,Adsorption ,Geochemistry and Petrology ,Oxidation state ,Clay minerals ,Dissolution - Abstract
In situ technetium-99 (99Tc) immobilization by Fe(II) associated with clay minerals is a potential cost-effective method for Tc remediation at contaminated sites. The oxidation state of Fe is constantly cycled in sedimentary environments, however the effect of this cycle on Tc reduction and immobilization has not yet been investigated. The objective of this project was therefore to study how multiple cycles of reduction–reoxidation of Fe-rich clay mineral, nontronite, affected its reactivity toward Tc (VII) reduction. Iron-rich nontronite NAu-2 was used as a model clay mineral. NAu-2 suspension was first bioreduced by Shewanella putrefaciens CN32, which was subsequently re-oxidized by air. Three cycles of reduction–oxidation were conducted and bioreduced NAu-2 samples from all three cycles were collected and used for Tc(VII) reduction experiments. Each redox cycle resulted in a small fraction of dissolution of small size and/or poorly crystalline NAu-2. The released Fe(II) from the dissolution was likely adsorbed onto NAu-2 surface/edge sites with a high reactivity. Upon exposure to O2, this reactive Fe(II) fraction was oxidized more rapidly than structural Fe(II) and may have accounted for a two-step reoxidation kinetics of NAu-2 associated Fe(II): rapid oxidation over first few hours followed by slow oxidation. Progressive increase of this reactive fraction of Fe(II), from increased dissolution, accounted for the successively higher rate of bioreduction and reoxidation with increased redox cycles. The same Fe redistribution accounted for two-step Tc(VII) reduction kinetics as well. Rapid Tc(VII) reduction in the first few hours may be attributed to a small fraction of highly reactive Fe(II) at the NAu-2 surface/edge sites, and more steady Tc(VII) reduction over longer time may be carried out by structural Fe(II). Similar to the increased rates of Fe(III) reduction and Fe(II) oxidation, the Tc(VII) reduction rate also increased with redox cycles and could be explained by progressive increase of the reactive Fe(II) on NAu-2 surface/edges. Iron-rich clay minerals undergo important changes after redox cycles, but eventually reach a steady state with continued reactivity toward heavy metals.
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- 2012
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21. The mineralogic transformation of ferrihydrite induced by heterogeneous reaction with bioreduced anthraquinone disulfonate (AQDS) and the role of phosphate
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Ravi K. Kukkadapu, John M. Zachara, Bruce W. Arey, Mark E. Bowden, T. S. Peretyazhko, Chong M. Wang, Dean A. Moore, and David W. Kennedy
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Goethite ,Inorganic chemistry ,engineering.material ,Phosphate ,Redox ,Anthraquinone ,Metal ,chemistry.chemical_compound ,Ferrihydrite ,chemistry ,Geochemistry and Petrology ,visual_art ,engineering ,visual_art.visual_art_medium ,Lepidocrocite ,Magnetite - Abstract
Bioreduced anthraquinone-2,6-disulfonate (AH2DS; dihydro-anthraquinone) was reacted with a 2-line, Si-substituted ferrihydrite under anoxic conditions at neutral pH in PIPES buffer. Phosphate (P) and bicarbonate (C); common adsorptive oxyanions and media/buffer components known to effect ferrihydrite mineralization; and Fe(II)aq (as a catalytic mineralization agent) were used in comparative experiments. Heterogeneous AH2DS oxidation coupled with Fe(III) reduction occurred within 0.13–1 day, with mineralogic transformation occurring thereafter. The product suite included lepidocrocite, goethite, and/or magnetite, with proportions varing with reductant:oxidant ratio (r:o) and the presence of P or C. Lepidocrocite was the primary product at low r:o in the absence of P or C, with evidence for multiple formation pathways. Phosphate inhibited reductive recrystallization, while C promoted goethite formation. Stoichiometric magnetite was the sole product at higher r:o in the absence and presence of P. Lepidocrocite was the primary mineralization product in the Fe(II)aq system, with magnetite observed at near equal amounts when Fe(II) was high [Fe(II)/Fe(III)] = 0.5 and P was absent. P had a greater effect on reductive mineralization in the Fe(II)aq system, while AQDS was more effective than Fe(II)aq in promoting magnetite formation. The mineral products of the direct AH2DS-driven reductive reaction are different from those observed in AH2DS-ferrihydite systems with metal reducing bacteria, particularly in presence of P.
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- 2011
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22. Bioreduction of Fe-bearing clay minerals and their reactivity toward pertechnetate (Tc-99)
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Michael E. Bishop, Richard E. Edelmann, Chongxuan Liu, Hailiang Dong, and Ravi K. Kukkadapu
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biology ,Palygorskite ,Nontronite ,Electron donor ,engineering.material ,Shewanella putrefaciens ,biology.organism_classification ,Ferrous ,chemistry.chemical_compound ,Montmorillonite ,chemistry ,Geochemistry and Petrology ,Illite ,engineering ,medicine ,Clay minerals ,medicine.drug ,Nuclear chemistry - Abstract
99 Technetium ( 99 Tc) is a fission product of uranium-235 and plutonium-239 and poses a high environmental hazard due to its long half-life ( t 1/2 = 2.13 × 10 5 y), abundance in nuclear wastes, and environmental mobility under oxidizing conditions [i.e., Tc(VII)]. Under reducing conditions, Tc(VII) can be reduced to insoluble Tc(IV). Ferrous iron, either in aqueous form (Fe 2+ ) or in mineral form [Fe(II)], has been used to reduce Tc(VII) to Tc(IV). However, the reactivity of Fe(II) from clay minerals, other than nontronite, toward immobilization of Tc(VII) and its role in retention of reduced Tc(IV) has not been investigated. In this study the reactivity of a suite of clay minerals toward Tc(VII) reduction and immobilization was evaluated. The clay minerals chosen for this study included five members in the smectite–illite (S–I) series, (montmorillonite, nontronite, rectorite, mixed layered I–S, and illite), chlorite, and palygorskite. Surface Fe-oxides were removed from these minerals with a modified dithionite–citrate–bicarbonate (DCB) procedure. The total structural Fe content of these clay minerals, after surface Fe-oxide removal, ranged from 0.7% to 30.4% by weight, and the structural Fe(III)/Fe(total) ratio ranged from 45% to 98%. X-ray diffraction (XRD) and Mossbauer spectroscopy results showed that after Fe oxide removal the clay minerals were free of Fe-oxides. Scanning electron microscopy (SEM) revealed that little dissolution occurred during the DCB treatment. Bioreduction experiments were performed in bicarbonate buffer (pH-7) with structural Fe(III) in the clay minerals as the sole electron acceptor, lactate as the sole electron donor, and Shewanella putrefaciens CN32 cells as a mediator. In select tubes, anthraquinone-2,6-disulfate (AQDS) was added as electron shuttle to facilitate electron transfer. In the S–I series, smectite (montmorillonite) was the most reducible (18% and 41% without and with AQDS, respectively) and illite the least (1% for both without and with AQDS). The extent and initial rate of bioreduction were positively correlated with the percent smectite in the S–I series (i.e., layer expandability). Fe(II) in the bioreduced clay minerals subsequently was used to reduce Tc(VII) to Tc(IV) in PIPES buffer. Similar to the trend of bioreduction, in the S–I series, reduced NAu-2 showed the highest reactivity toward Tc(VII), and reduced illite exhibited the least. The initial rate of Tc(VII) reduction, after normalization to clay and Fe(II) concentrations, was positively correlated with the percent smectite in the S–I series. Fe(II) in chlorite and palygorskite was also reactive toward Tc(VII) reduction. These data demonstrate that crystal chemical parameters (layer expandability, Fe and Fe(II) contents, and surface area, etc.) play important roles in controlling the extent and rate of bioreduction and the reactivity toward Tc(VII) reduction. Reduced Tc(IV) resides within clay mineral matrix, and this association could minimize any potential of reoxidation over long term.
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- 2011
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23. Fractionation of oxygen isotopes in phosphate during its interactions with iron oxides
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Ravi K. Kukkadapu, Deb P. Jaisi, and Ruth E. Blake
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chemistry.chemical_compound ,Ferrihydrite ,Aqueous solution ,Isotope fractionation ,Geochemistry and Petrology ,Chemistry ,Desorption ,Inorganic chemistry ,Iron oxide ,Sorption ,Fractionation ,Phosphate - Abstract
Iron (III) oxides are ubiquitous in near-surface soils and sediments and interact strongly with dissolved phosphates via sorption, co-precipitation, mineral transformation and redox-cycling reactions. Iron oxide phases are thus, an important reservoir for dissolved phosphate, and phosphate bound to iron oxides may reflect dissolved phosphate sources as well as carry a history of the biogeochemical cycling of phosphorus (P). It has recently been demonstrated that dissolved inorganic phosphate (DIP) in rivers, lakes, estuaries and the open ocean can be used to distinguish different P sources and biological reaction pathways in the ratio of 18O/16O (δ18OP) in PO43−. Here we present results of experimental studies aimed at determining whether non-biological interactions between dissolved inorganic phosphate and solid iron oxides involve fractionation of oxygen isotopes in PO4. Determination of such fractionations is critical to any interpretation of δ18OP values of modern (e.g., hydrothermal iron oxide deposits, marine sediments, soils, groundwater systems) to ancient and extraterrestrial samples (e.g., BIF’s, Martian soils). Batch sorption experiments were performed using varied concentrations of synthetic ferrihydrite and isotopically-labeled dissolved ortho-phosphate at temperatures ranging from 4 to 95 °C. Mineral transformations and morphological changes were determined by X-Ray, Mossbauer spectroscopy and SEM image analyses. Our results show that isotopic fractionation between sorbed and aqueous phosphate occurs during the early phase of sorption with isotopically-light phosphate (P16O4) preferentially incorporated into sorbed/solid phases. This fractionation showed negligible temperature-dependence and gradually decreased as a result of O-isotope exchange between sorbed and aqueous-phase phosphate, to become insignificant at greater than ∼100 h of reaction. In high-temperature experiments, this exchange was very rapid resulting in negligible fractionation between sorbed and aqueous-phase phosphate at much shorter reaction times. Mineral transformation resulted in initial preferential desorption/loss of light phosphate (P16O4) to solution. However, the continual exchange between sorbed and aqueous PO4, concomitant with this mineralogical transformation resulted again in negligible fractionation between aqueous and sorbed PO4 at long reaction times (>2000 h). This finding is consistent with results obtained from natural marine samples. Therefore, 18O values of dissolved phosphate (DIP) in sea water may be preserved during its sorption to iron-oxide minerals such as hydrothermal plume particles, making marine iron oxides a potential new proxy for dissolved phosphate in the oceans.
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- 2010
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24. Biomineralization associated with microbial reduction of Fe3+ and oxidation of Fe2+ in solid minerals
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Gengxin Zhang, Dennis D. Eberl, Jinwook Kim, Ravi K. Kukkadapu, Hailiang Dong, Zhiqin Xu, and Hongchen Jiang
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Goethite ,Inorganic chemistry ,Nontronite ,Electron donor ,engineering.material ,Siderite ,chemistry.chemical_compound ,Ferrihydrite ,Geophysics ,chemistry ,Geochemistry and Petrology ,visual_art ,Oxidizing agent ,visual_art.visual_art_medium ,engineering ,Lepidocrocite ,Biomineralization - Abstract
Iron- reducing and oxidizing microorganisms gain energy through reduction or oxidation of iron, and by doing so they play an important role in geochemical cycling of iron in a wide range of environments. This study was undertaken to investigate iron redox cycling in the deep subsurface by taking an advantage of the Chinese Continental Scientific Deep Drilling project. A fluid sample from 2450 m was collected and Fe(III)-reducing microorganisms were enriched using specific media (pH 6.2). Nontronite, an Fe(III)-rich clay mineral, was used in initial enrichments with lactate and acetate as electron donors under strictly anaerobic condition at the in-situ temperature of the fluid sample (65oC). Instead of a monotonic increase in Fe(II) concentration with time as would have been expected if Fe(III) bioreduction was the sole process, Fe(II) concentration initially increased, reached a peak, but then decreased to a minimum level. Continued incubation revealed an iron cycling with a cycling period of five to ten days. These initial results suggested that there might be Fe(III) reducers and Fe(II) oxidizers in the enrichment culture. Subsequently, multiple transfers were made with an attempt to isolate individual Fe(III) reducers and Fe(II) oxidizers. However, iron cycling persisted after multiple transfers. Additional experiments weremore » conducted to ensure that iron reduction and oxidation was indeed biological. Biological Fe(II) oxidation was further confirmed in a series of roll tubes (with a pH gradient) where FeS and siderite were used as the sole electron donor. The oxidation of FeS occurred only at pH 10, and goethite, lepidocrocite, and ferrihydrite formed as oxidation products. Although molecular evidence (16S rRNA gene analysis) collectively suggested that only a single organism (a strain of Thermoanaerobacter ethanolicus) might be responsible for both Fe(III) reduction and Fe(II) oxidation, we could not rule out the possibility that Fe(III) reduction and Fe(II) oxidation may be accomplished by a consortia of organisms. Nonetheless, our data were definitive in showing that iron redox cycling exists in the deep subsurface.« less
- Published
- 2009
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25. Long-term dynamics of uranium reduction/reoxidation under low sulfate conditions
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Peter R. Jaffé, Ravi K. Kukkadapu, Aaron D. Peacock, and John Komlos
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inorganic chemicals ,Inorganic chemistry ,chemistry.chemical_element ,Electron donor ,Uranium ,complex mixtures ,Oxygen ,Silicate ,Biostimulation ,chemistry.chemical_compound ,Bioremediation ,chemistry ,Geochemistry and Petrology ,Environmental chemistry ,Sulfate ,Groundwater - Abstract
The biological reduction and precipitation of uranium in groundwater has the potential to prevent uranium migration from contaminated sites. Although previous research has shown that uranium bioremediation is maximized during iron reduction, little is known on how long-term iron/uranium reducing conditions can be maintained. Questions also remain about the stability of uranium and other reduced species after a long-term biostimulation scheme is discontinued and oxidants (i.e., oxygen) re-enter the bioreduced zone. To gain further insights into these processes, four columns, packed with sediment containing iron as Fe-oxides (mainly Al-goethite) and silicate Fe (Fe-containing clays), were operated in the laboratory under field-relevant flow conditions to measure the long-term (>200 day) removal efficiency of uranium from a simulated groundwater during biostimulation with an electron donor (3 mM acetate) under low sulfate conditions. The biostimulation experiments were then followed by reoxidation of the reduced sediments with oxygen. During biostimulation, Fe(III) reduction occurred simultaneously with U(VI) reduction. Both Fe-oxides and silicate Fe(III) were partly reduced, and silicate Fe(III) reduction was detected only during the first half of the biostimulation phase
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- 2008
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26. Effects of gamma-sterilization on the physico-chemical properties of natural sediments
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Phil Jardine, T. L. Bank, Ravi K. Kukkadapu, Andrew S. Madden, Matthew Ginder-Vogel, and M. E. Baldwin
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chemistry.chemical_classification ,Goethite ,Iron oxide ,Sediment ,Geology ,Sorption ,Direct reduced iron ,complex mixtures ,chemistry.chemical_compound ,chemistry ,Geochemistry and Petrology ,Environmental chemistry ,visual_art ,Cation-exchange capacity ,visual_art.visual_art_medium ,Organic matter ,Clay minerals - Abstract
Batch U(VI) sorption/reduction experiments were completed on sterilized and non-sterilized sediment samples to elucidate biological and geochemical reduction mechanisms. Results from X-ray absorption near-edge structure (XANES) spectroscopy revealed that γ-sterilized sediments were actually better sorbents of U(VI), despite the absence of any measurable biological activity. These results indicate that γ-irradiation induced significant physico-chemical changes in the sediment which is contrary to numerous other studies identifying γ-sterilization as an effective and minimally invasive technique. To identify the extent and method of alteration of the soil as a result of γ-sterilization, untreated soil samples, physically separated size fractions, and chemically extracted fractions of the soil were analyzed pre- and post-sterilization. The effects of sterilization on mineralogy, pH, natural organic matter (NOM), cation exchange capacity (CEC), and iron oxidation state were determined. Results indicated that major mineralogy of the clay and whole sediment samples was unchanged. Sediment pH decreased only slightly with γ-irradiation; however, irradiation produced a significant decrease in CEC of the untreated sediments and affected both the organic and inorganic fractions. Mossbauer spectra of non-sterile and γ-sterilized sediments measured more reduced iron present in γ-sterilized sediments compared to non-sterile samples. Our results suggest that sterilization by γ-irradiation induced iron reduction that may have increased the sorption and/or reduction of U(VI) onto these sediments. However, Mossbauer and batch sorption data are somewhat contradictory, the former indicates that the iron oxide or iron hydroxide minerals are more significantly reduced while the later indicates that reduced clay minerals account for greater sorption of U(VI).
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- 2008
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27. Heterogeneous reduction of Tc(VII) by Fe(II) at the solid–water interface
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Chongxuan Liu, Charles T. Resch, John M. Zachara, Steve M. Heald, T. S. Peretyazhko, Ravi K. Kukkadapu, Byong-Hun Jeon, and Dean A. Moore
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Aqueous solution ,Goethite ,Chemistry ,Muscovite ,Inorganic chemistry ,Hematite ,engineering.material ,Redox ,Adsorption ,Octahedron ,Geochemistry and Petrology ,visual_art ,Mössbauer spectroscopy ,visual_art.visual_art_medium ,engineering - Abstract
Experiments were performed herein to investigate the rates and products of heterogeneous reduction of Tc(VII) by Fe(II) adsorbed to hematite and goethite, and by Fe(II) associated with a dithionite–citrate–bicarbonate (DCB) reduced natural phyllosilicate mixture [structural, ion-exchangeable, and edge-complexed Fe(II)] containing vermiculite, illite, and muscovite. The heterogeneous reduction of Tc(VII) by Fe(II) adsorbed to the Fe(III) oxides increased with increasing pH and was coincident with a second event of Fe 2 + (aq) adsorption. The reaction was almost instantaneous above pH 7. In contrast, the reduction rates of Tc(VII) by DCB-reduced phyllosilicates were not sensitive to pH or to added Fe 2 + (aq) that adsorbed to the clay. The reduction kinetics were orders of magnitude slower than observed for the Fe(III) oxides, and appeared to be controlled by structural Fe(II). The following affinity series for heterogeneous Tc(VII) reduction by Fe(II) was suggested by the experimental results: aqueous Fe(II) ∼ adsorbed Fe(II) in phyllosilicates [ion-exchangeable and some edge-complexed Fe(II)] ≪ structural Fe(II) in phyllosilicates ≪ Fe(II) adsorbed on Fe(III) oxides. Tc-EXAFS spectroscopy revealed that the reduction products were virtually identical on hematite and goethite that were comprised primarily of sorbed octahedral TcO2 monomers and dimers with significant Fe(III) in the second coordination shell. The nature of heterogeneous Fe(III) resulting from the redox reaction was ambiguous as probed by Tc-EXAFS spectroscopy, although Mossbauer spectroscopy applied to an experiment with 56Fe-goethite with adsorbed 57Fe(II) implied that redox product Fe(III) was goethite-like. The Tc(IV) reduction product formed on the DCB-reduced phyllosilicates was different from the Fe(III) oxides, and was more similar to Tc(IV) oxyhydroxide in its second coordination shell. The heterogeneous reduction of Tc(VII) to less soluble forms by Fe(III) oxide-adsorbed Fe(II) and structural Fe(II) in phyllosilicates may be an important geochemical process that will proceed at very different rates and that will yield different surface species depending on subsurface pH and mineralogy.
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- 2008
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28. Reduction of pertechnetate [Tc(VII)] by aqueous Fe(II) and the nature of solid phase redox products
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Chongxuan Liu, Ravi K. Kukkadapu, John M. Zachara, Byong-Hun Jeon, James P. McKinley, Steve M. Heald, Alice Dohnalkova, and Dean A. Moore
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Valence (chemistry) ,Aqueous solution ,Pertechnetate ,Chemistry ,Inorganic chemistry ,Kinetics ,chemistry.chemical_element ,Anoxic waters ,Oxygen ,Redox ,chemistry.chemical_compound ,Geochemistry and Petrology ,Nuclear chemistry ,Magnetite - Abstract
The subsurface behaviour of 99Tc, a contaminant resulting from nuclear fuels reprocessing, is dependent on its valence (e.g., IV or VII). Abiotic reduction of soluble Tc(VII) by Fe(II)(aq) in pH 6–8 solutions was investigated under strictly anoxic conditions using an oxygen trap (
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- 2007
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29. Reductive biotransformation of Fe in shale–limestone saprolite containing Fe(III) oxides and Fe(II)/Fe(III) phyllosilicates
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Steven C. Smith, James K. Fredrickson, Ravi K. Kukkadapu, David W. Kennedy, John M. Zachara, James P. McKinley, and Hailiang Dong
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Aqueous solution ,Mineral ,Goethite ,biology ,Chemistry ,Inorganic chemistry ,engineering.material ,Shewanella putrefaciens ,biology.organism_classification ,Siderite ,chemistry.chemical_compound ,Geochemistry and Petrology ,visual_art ,Illite ,Mössbauer spectroscopy ,engineering ,visual_art.visual_art_medium ,Magnetite - Abstract
A
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- 2006
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30. Control of Fe(III) site occupancy on the rate and extent of microbial reduction of Fe(III) in nontronite
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Deb P. Jaisi, Dennis D. Eberl, Hailiang Dong, and Ravi K. Kukkadapu
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Goethite ,biology ,Bicarbonate ,Inorganic chemistry ,Nontronite ,Electron donor ,Shewanella putrefaciens ,biology.organism_classification ,chemistry.chemical_compound ,chemistry ,Octahedron ,Geochemistry and Petrology ,Transmission electron microscopy ,visual_art ,Mössbauer spectroscopy ,visual_art.visual_art_medium - Abstract
A quantitative study was performed to understand how Fe(III) site occupancy controls Fe(III) bioreduction in nontronite by Shewanella putrefaciens CN32. NAu-1 and NAu-2 were nontronites and contained Fe(III) in different structural sites with 16 and 23% total iron (w/w), respectively, with almost all iron as Fe(III). Mossbauer spectroscopy showed that Fe(III) was present in the octahedral site in NAu-1 (with a small amount of goethite), but in both the tetrahedral and the octahedral sites in NAu-2. Mossbauer data further showed that the octahedral Fe(III) in NAu-2 existed in at least two environments- trans (M1) and cis (M2) sites. The microbial Fe(III) reduction in NAu-1 and NAu-2 was studied in batch cultures at a nontronite concentration of 5 mg/mL in bicarbonate buffer with lactate as the electron donor. The unreduced and bioreduced nontronites were characterized by X-ray diffraction (XRD), Mossbauer spectroscopy, and transmission electron microscopy (TEM). In the presence of an electron shuttle, anthraquinone-2,6-disulfonate (AQDS), the extent of bioreduction was 11%–16% for NAu-1 but 28%–32% for NAu-2. The extent of reduction in the absence of AQDS was only 5%–7% for NAu-1 but 14%–18% for NAu-2. The control experiments with heat killed cells and without cells did not show any appreciable reduction (
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- 2005
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31. Ferrous hydroxy carbonate is a stable transformation product of biogenic magnetite
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James K. Fredrickson, David W. Kennedy, John M. Zachara, Alice Dohnalkova, David E. McCready, and Ravi K. Kukkadapu
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biology ,Akaganéite ,Inorganic chemistry ,Electron donor ,Shewanella putrefaciens ,engineering.material ,biology.organism_classification ,Ferrous ,chemistry.chemical_compound ,Ferrihydrite ,Geophysics ,chemistry ,Geochemistry and Petrology ,Mössbauer spectroscopy ,engineering ,Carbonate ,Magnetite - Abstract
A ~1:1 mixture of ferrihydrite and nanocrystalline akaganeite (β-FeOOH; 10-15 nm) was incubated with Shewanella putrefaciens (strain CN32) under anoxic conditions with lactate as an electron donor and anthraquinone-2,6-disulfonate (AQDS) as an electron shuttle. The incubation was carried out in a 1,4-piperazinediethanesulfonic acid (PIPES)-buffered medium, without PO³⁻₄ at circumneutral pH. Iron reduction was measured as a function of time (as determined by 0.5 N HCl extraction), and solids were characterized by X-ray diffraction (XRD), electron microscopy, and Mossbauer spectroscopy. The biogenic reduction of Fe3+ was rapid; with 60% of the total Fe (Feтот) reduced in one day. Only an additional 10% of Feтот was reduced over the next three years. A fine-grained (10 nm), cation-excess (CE) magnetite with a Fe²⁺/Feтот ratio of 0.5-0.6 was the sole biogenic product after one day of incubation. The CE magnetite was unstable and partially transformed to micron-sized ferrous hydroxy carbonate [FHC; Fe₂ (OH)₂CO3(s)], a rosasite-type mineral, with time. Ferrous hydroxy carbonate dominated the mineral composition of the three year incubated sample. The Fe²⁺/Feтот ratio of the residual CE magnetite after three years of incubation was lower than the day 1 sample and was close to that of stochiometric magnetite (0.33). To best of ourmore » knowledge, this is the first report of biogenic FHC, and only the third observation of this material in nature. Ferrous hydroxy carbonate appeared to form by slow reaction of microbially produced carbonate with Fe²⁺-excess magnetite. The FHC may be an overlooked mineral phase that explains the infrequent occurrence of fine-grained, biogenic magnetite in anoxic sediments.« less
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- 2005
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32. Reduction of TcO4− by sediment-associated biogenic Fe(II)
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Chongxuan Liu, James K. Fredrickson, Ravi K. Kukkadapu, John M. Zachara, Steve M. Heald, James P. McKinley, Andrew E. Plymale, and David W. Kennedy
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biology ,Inorganic chemistry ,Sorption ,engineering.material ,Shewanella putrefaciens ,Vermiculite ,biology.organism_classification ,Anoxic waters ,Redox ,chemistry.chemical_compound ,Hydroxylamine ,chemistry ,Geochemistry and Petrology ,Illite ,engineering ,Clay minerals - Abstract
The potential for reduction of 99TcO4−(aq) to poorly soluble 99TcO2 · nH2O(s) by biogenic sediment-associated Fe(II) was investigated with three Fe(III)-oxide containing subsurface materials and the dissimilatory metal-reducing subsurface bacterium Shewanella putrefaciens CN32. Two of the subsurface materials from the U.S. Department of Energy’s Hanford and Oak Ridge sites contained significant amounts of Mn(III,IV) oxides and net bioreduction of Fe(III) to Fe(II) was not observed until essentially all of the hydroxylamine HCl-extractable Mn was reduced. In anoxic, unreduced sediment or where Mn oxide bioreduction was incomplete, exogenous biogenic TcO2 · nH2O(s) was slowly oxidized over a period of weeks. Subsurface materials that were bioreduced to varying degrees and then pasteurized to eliminate biological activity, reduced TcO4−(aq) at rates that generally increased with increasing concentrations of 0.5 N HCl-extractable Fe(II). Two of the sediments showed a common relationship between extractable Fe(II) concentration (in mM) and the first-order reduction rate (in h−1), whereas the third demonstrated a markedly different trend. A combination of chemical extractions and 57Fe Mossbauer spectroscopy were used to characterize the Fe(III) and Fe(II) phases. There was little evidence of the formation of secondary Fe(II) biominerals as a result of bioreduction, suggesting that the reactive forms of Fe(II) were predominantly surface complexes of different forms. The reduction rates of Tc(VII)O4− were slowest in the sediment that contained plentiful layer silicates (illite, vermiculite, and smectite), suggesting that Fe(II) sorption complexes on these phases were least reactive toward pertechnetate. These results suggest that the in situ microbial reduction of sediment-associated Fe(III), either naturally or via redox manipulation, may be effective at immobilizing TcO4−(aq) associated with groundwater contaminant plumes.
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- 2004
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33. Biotransformation of two-line silica-ferrihydrite by a dissimilatory Fe(III)-reducing bacterium: formation of carbonate green rust in the presence of phosphate
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John M. Zachara, David W. Kennedy, James K. Fredrickson, and Ravi K. Kukkadapu
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Aqueous solution ,biology ,Inorganic chemistry ,Electron donor ,Shewanella putrefaciens ,Phosphate ,biology.organism_classification ,Mineralization (biology) ,chemistry.chemical_compound ,Ferrihydrite ,chemistry ,Geochemistry and Petrology ,Mössbauer spectroscopy ,Vivianite - Abstract
The reductive biotransformation of two Si-ferrihydrite coprecipitates (1 and 5 mole % Si) by Shewanella putrefaciens, strain CN32, was investigated in 1,4-piperazinediethanesulfonic acid-buffered media (pH ∼7) with lactate as the electron donor. Anthraquinone-2,6-disulfonate, an electron shuttle, was present in the media. Experiments were performed without and with PO43− (P) (1 to 20 mmol/L) in media containing 50 mmol/L Fe. Our objectives were to define the combined effects of SiO44− (Si) and P on the bioreducibility and biomineralization of ferrihydrites under anoxic conditions. Iron reduction was measured as a function of time, solids were characterized by powder X-ray diffraction and Mossbauer spectroscopy, and aqueous solutions were analyzed for Si, P, Cl− and inorganic carbon. Both of the ferrihydrites were rapidly reduced regardless of the Si and P content. Si concentration had no effect on the reduction rate or mineralization products. Magnetite was formed in the absence of P whereas carbonate green rust GR(CO32−) ([Fe(6−x)IIFeIIIx(OH)12]x+(CO32−)0.5x · yH2O) and vivianite [Fe3(PO4)2 · 8H2O], were formed when P was present. GR(CO32−) dominated as a mineral product in samples with
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- 2004
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34. Copper Sorption Mechanisms on Smectites
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Noel E. Palmer, Daniel G. Strawn, Carmen Goodell, James E. Amonette, Luca J. Furnare, and Ravi K. Kukkadapu
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Extended X-ray absorption fine structure ,Chemistry ,Inorganic chemistry ,Soil Science ,Sorption ,X-ray absorption fine structure ,Silanol ,chemistry.chemical_compound ,Adsorption ,Montmorillonite ,Geochemistry and Petrology ,Earth and Planetary Sciences (miscellaneous) ,Absorption (chemistry) ,Clay minerals ,Water Science and Technology - Abstract
Due to the importance of clay minerals in metal sorption, many studies have attempted to derive mechanistic models that describe adsorption processes. These models often include several different types of adsorption sites, including permanent charge sites and silanol and aluminol functional groups on the edges of clay minerals. To provide a basis for development of adsorption models it is critical that molecular-level studies be done to characterize sorption processes. In this study we conducted X-ray absorption fine structure (XAFS) and electron paramagnetic resonance (EPR) spectroscopic experiments on copper (II) sorbed on smectite clays using suspension pH and ionic strength as variables. At low ionic strength, results suggest that Cu is sorbing in the interlayers and maintains its hydration sphere. At high ionic strength, Cu atoms are excluded from the interlayer and sorb primarily on the silanol and aluminol functional groups of the montmorillonite or beidellite structures. Interpretation of the XAFS and EPR spectroscopy results provides evidence that multinuclear complexes are forming. Fitting of extended X-ray absorption fine structure spectra revealed that the Cu-Cu atoms in the multinuclear complexes are 2.65 A apart, and have coordination numbers near one. This structural information suggests that small Cu dimers are sorbing on the surface. These complexes are consistent with observed sorption on mica and amorphous silicon dioxide, yet are inconsistent with previous spectroscopic results for Cu sorption on montmorillonite. The results reported in this paper provide mechanistic data that will be valuable for modeling surface interactions of Cu with clay minerals, and predicting the geochemical cycling of Cu in the environment.
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- 2004
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35. Biogeochemical transformation of Fe minerals in a petroleum-contaminated aquifer
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Todd Anderson, Alice Dohnalkova, John M. Zachara, James K. Fredrickson, Ravi K. Kukkadapu, and Paul L. Gassman
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Calcite ,Goethite ,Mineralogy ,Authigenic ,Hematite ,Ferrihydrite ,Siderite ,chemistry.chemical_compound ,chemistry ,Geochemistry and Petrology ,visual_art ,visual_art.visual_art_medium ,Carbonate ,Energy source ,Geology - Abstract
The Bemidji aquifer in Minnesota, USA is a well-studied site of subsurface petroleum contamination. The site contains an anoxic groundwater plume where soluble petroleum constituents serve as an energy source for a region of methanogenesis near the source and bacterial Fe(III) reduction further down gradient. Methanogenesis apparently begins when bioavailable Fe(III) is exhausted within the sediment. Past studies indicate that Geobacter species and Geothrix fermentens-like organisms are the primary dissimilatory Fe-reducing bacteria at this site. The Fe mineralogy of the pristine aquifer sediments and samples from the methanogenic (source) and Fe(III) reducing zones were characterized in this study to identify microbiologic changes to Fe valence and mineral distribution, and to identify whether new biogenic mineral phases had formed. Methods applied included X-ray diffraction; X-ray fluorescence (XRF); and chemical extraction; optical, transmission, and scanning electron microscopy; and Mossbauer spectroscopy. All of the sediments were low in total Fe content (≈ 1%) and exhibited complex Fe-mineralogy. The bulk pristine sediment and its sand, silt, and clay-sized fractions were studied in detail. The pristine sediments contained Fe(II) and Fe(III) mineral phases. Ferrous iron represented approximately 50% of FeTOT. The relative Fe(II) concentration increased in the sand fraction, and its primary mineralogic residence was clinochlore with minor concentrations found as a ferroan calcite grain cement in carbonate lithic fragments. Fe(III) existed in silicates (epidote, clinochlore, muscovite) and Fe(III) oxides of detrital and authigenic origin. The detrital Fe(III) oxides included hematite and goethite in the form of mm-sized nodular concretions and smaller-sized dispersed crystallites, and euhedral magnetite grains. Authigenic Fe(III) oxides increased in concentration with decreasing particle size through the silt and clay fraction. Chemical extraction and Mossbauer analysis indicated that this was a ferrihydrite like-phase. Quantitative mineralogic and Fe(II/III) ratio comparisons between the pristine and contaminated sediments were not possible because of textural differences. However, comparisons between the texturally-similar source (where bioavailable Fe(III) had been exhausted) and Fe(III) reducing zone sediments (where bioavailable Fe(III) remained) indicated that dispersed detrital, crystalline Fe(III) oxides and a portion of the authigenic, poorly crystalline Fe(III) oxide fraction had been depleted from the source zone sediment by microbiologic activity. Little or no effect of microbiologic activity was observed on silicate Fe(III). The presence of residual “ferrihydrite” in the most bioreduced, anoxic plume sediment (source) implied that a portion of the authigenic Fe(III) oxides were biologically inaccessible in weathered, lithic fragment interiors. Little evidence was found for the modern biogenesis of authigenic ferrous-containing mineral phases, perhaps with the exception of thin siderite or ferroan calcite surface precipitates on carbonate lithic fragments within source zone sediments.
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- 2004
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36. Transformation of 2-line ferrihydrite to 6-line ferrihydrite under oxic and anoxic conditions
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James K. Fredrickson, Steven C. Smith, Colleen K. Russell, John M. Zachara, Alice Dohnalkova, and Ravi K. Kukkadapu
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Goethite ,biology ,Inorganic chemistry ,Sorption ,Hematite ,Shewanella putrefaciens ,biology.organism_classification ,law.invention ,chemistry.chemical_compound ,Ferrihydrite ,Geophysics ,chemistry ,Geochemistry and Petrology ,law ,visual_art ,Mössbauer spectroscopy ,visual_art.visual_art_medium ,Crystallization ,Magnetite - Abstract
Mineralogical transformations of 2-line ferrihydrite were studied under oxic and Fe3+-reducing conditions to establish the role, if any, of 6-line ferrihydrite (“well” organized ferrihydrite) in the reaction pathway and as a final product. In oxic experiments, concentrated suspensions (0.42 mol/L Fe3+ in 0.1 mol/L NaClO4) of freshly synthesized 2-line ferrihydrite, with and without 3% Ni2+, were aged at an initial pH = 7.2 (unbuffered and unadjusted) and 25 °C for more than three years. X-ray diffraction, transmission electron microscopy, and Mossbauer spectroscopy measurements were performed on the solids after different aging periods. The primary mineralogical products observed were 6-line ferrihydrite and goethite, with minor hematite. Aggregation and crystallization of the 2-line ferrihydrite liberated protons and depressed suspension pH, but coprecipitated Ni2+ retarded this process. The joint, interrelated effects of Ni and pH influenced both the extent of conversion of 2-line ferrihydrite and the identity of the major transformation products. Six-line ferrihydrite dominated in the Ni ferrihydrite suspension, whereas goethite dominated in the absence of Ni. Aggregation-induced crystallization of 2-line ferrihydrite particles seemed responsible for 6-line ferrihydrite formation. Mineralogical changes to Ni ferrihydrite under anaerobic conditions were investigated at circumneutral pH using the Fe3+-reducing bacterium Shewanella putrefaciens . Residual 6-line ferrihydrite dominated bioreduced samples that also contained goethite and magnetite. The conversion of 2-line ferrihydrite to 6-line ferrihydrite was considerably more rapid under anaerobic conditions. The sorption of biogenic Fe2+ apparently induced intra-aggregate transformation of 2-line ferrihydrite to 6-line ferrihydrite. Collectively, abiotic and biotic studies indicated that 6-line ferrihydrite can be a transformation product of 2-line ferrihydrite, especially when 2-line ferrihydrite is undergoing transformation to more stable hematite or magnetite.
- Published
- 2003
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37. Secondary mineralization pathways induced by dissimilatory iron reduction of ferrihydrite under advective flow
- Author
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Ravi K. Kukkadapu, Alice Dohnalkova, Shawn G. Benner, Colleen M. Hansel, Scott Fendorf, and Jim Neiss
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Goethite ,biology ,Precipitation (chemistry) ,Inorganic chemistry ,Shewanella putrefaciens ,biology.organism_classification ,Mineralization (biology) ,Ferrous ,Ferrihydrite ,chemistry.chemical_compound ,chemistry ,Geochemistry and Petrology ,visual_art ,visual_art.visual_art_medium ,Dissolution ,Magnetite - Abstract
Iron (hydr)oxides not only serve as potent sorbents and repositories for nutrients and contaminants but also provide a terminal electron acceptor for microbial respiration. The microbial reduction of Fe (hydr)oxides and the subsequent secondary solid-phase transformations will, therefore, have a profound influence on the biogeochemical cycling of Fe as well as associated metals. Here we elucidate the pathways and mechanisms of secondary mineralization during dissimilatory iron reduction by a common iron-reducing bacterium, Shewanella putrefaciens (strain CN32), of 2-line ferrihydrite under advective flow conditions. Secondary mineralization of ferrihydrite occurs via a coupled, biotic-abiotic pathway primarily resulting in the production of magnetite and goethite with minor amounts of green rust. Operating mineralization pathways are driven by competing abiotic reactions of bacterially generated ferrous iron with the ferrihydrite surface. Subsequent to the initial sorption of ferrous iron on ferrihydrite, goethite (via dissolution/reprecipitation) and/or magnetite (via solid-state conversion) precipitation ensues resulting in the spatial coupling of both goethite and magnetite with the ferrihydrite surface. The distribution of goethite and magnetite within the column is dictated, in large part, by flow-induced ferrous Fe profiles. While goethite precipitation occurs over a large Fe(II) concentration range, magnetite accumulation is only observed at concentrations exceeding 0.3 mmol/L (equivalent to 0.5 mmol Fe[II]/g ferrihydrite) following 16 d of reaction. Consequently, transport-regulated ferrous Fe profiles result in a progression of magnetite levels downgradient within the column. Declining microbial reduction over time results in lower Fe(II) concentrations and a subsequent shift in magnetite precipitation mechanisms from nucleation to crystal growth. While the initial precipitation rate of goethite exceeds that of magnetite, continued growth is inhibited by magnetite formation, potentially a result of lower Fe(III) activity. Conversely, the presence of lower initial Fe(II) concentrations followed by higher concentrations promotes goethite accumulation and inhibits magnetite precipitation even when Fe(II) concentrations later increase, thus revealing the importance of both the rate of Fe(II) generation and flow-induced Fe(II) profiles. As such, the operating secondary mineralization pathways following reductive dissolution of ferrihydrite at a given pH are governed principally by flow-regulated Fe(II) concentration, which drives mineral precipitation kinetics and selection of competing mineral pathways.
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- 2003
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38. Heterogeneous electron-transfer kinetics with synchrotron 57Fe Mössbauer spectroscopy
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Ravi K. Kukkadapu, Wolfgang Sturhahn, Thomas S. Toellner, James E. Amonette, and Esen E. Alp
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Electron transfer ,Reaction rate constant ,Mössbauer effect ,Geochemistry and Petrology ,Chemistry ,law ,Mössbauer spectroscopy ,Analytical chemistry ,Synchrotron radiation ,Quadrupole splitting ,Spectroscopy ,Synchrotron ,law.invention - Abstract
In the first known kinetic application of the technique, synchrotron 57Fe-Mossbauer spectroscopy was used to follow the rate of heterogeneous electron transfer between aqueous reagents and a solid phase containing Fe. The solid, a synthetic 57Fe-enriched Fe(III)-bearing pyroaurite-like phase having terephthalate (TA) in the interlayer [Mg3Fe(OH)8(TA)0.5 · 2H2O], was reduced by Na2S2O4 and then reoxidized by K2Cr2O7 by means of a novel flow-through cell. Synchrotron Mossbauer spectra were collected in the time domain at 30-s intervals. Integration of the intensity obtained during a selected time interval in the spectra allowed sensitive determination of Fe(II) content as a function of reaction time. Analysis of reaction end member specimens by both the synchrotron technique and conventional Mossbauer spectroscopy yielded comparable values for Mossbauer parameters such as center shift and Fe(II)/Fe(III) area ratios. Slight differences in quadrupole splitting values were observed, however. A reactive diffusion model was developed that fit the experimental Fe(II) kinetic data well and allowed the extraction of second-order rate constants for each reaction. Thus, in addition to rapidly collecting high quality Mossbauer data, the synchrotron technique seems well suited for aqueous rate experiments as a result of the penetrating power of 14.4 keV X-rays and high sensitivity to Fe valence state.
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- 2003
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39. Composition, stability, and measurement of reduced uranium phases for groundwater bioremediation at Old Rifle, CO
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Aaron D. Peacock, Emily K. Lesher, Daniel E. Giammar, Philip E. Long, Rizlan Bernier-Latmani, James A. Davis, Kenneth H. Williams, H. Veramani, Kate M. Campbell, John R. Bargar, Kai-Uwe Ulrich, Joanne E. Stubbs, Michael J. Wilkins, Ravi K. Kukkadapu, Linda Figueroa, and Steven B. Yabusaki
- Subjects
Environmental remediation ,chemistry.chemical_element ,Uranium ,Pollution ,Redox ,Biostimulation ,Bioremediation ,Uraninite ,chemistry ,Geochemistry and Petrology ,Environmental chemistry ,Environmental Chemistry ,Dissolution ,Groundwater - Abstract
Reductive biostimulation is currently being explored as a possible remediation strategy for U-contaminated groundwater, and is being investigated at a field site in Rifle, CO, USA. The long-term stability of the resulting U(IV) phases is a key component of the overall performance of the remediation approach and depends upon a variety of factors, including rate and mechanism of reduction, mineral associations in the subsurface, and propensity for oxidation. To address these factors, several approaches were used to evaluate the redox sensitivity of U: (1) measurement of the rate of oxidative dissolution of biogenic uraninite (UO2(s)) deployed in groundwater at Rifle, (2) characterization of a zone of natural bioreduction exhibiting relevant reduced mineral phases, and (3) laboratory studies of the oxidative capacity of Fe(III) and reductive capacity of Fe(II) with regard to U(IV) and U(VI), respectively. Published by Elsevier Ltd.
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- 2011
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40. Mineral transformations associated with the microbial reduction of magnetite
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John M. Zachara, Hailiang Dong, Tullis C. Onstott, James K. Fredrickson, David W. Kennedy, and Ravi K. Kukkadapu
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Biogeochemical cycle ,Mineral ,biology ,Chemistry ,Inorganic chemistry ,Geology ,engineering.material ,Shewanella putrefaciens ,biology.organism_classification ,Hydrous ferric oxides ,Siderite ,chemistry.chemical_compound ,Iron bacteria ,Geochemistry and Petrology ,Environmental chemistry ,engineering ,Vivianite ,Magnetite - Abstract
Although dissimilatory iron reducing bacteria DIRB are capable of reducing a number of metals in oxides and soluble forms, the factors controlling the raterextent of magnetite reduction and the nature of the mineral products resulting from magnetite reduction are not well understood. This study was carried out to investigate mechanisms and biogeochemical processes occurring during magnetite reduction by the DIRB, Shewanella putrefaciens strains CN32 and MR-1. Reduction experiments were performed with biogenic and synthetic magnetite in well-defined solutions. Biogenic magnetite was . generated via microbial reduction of hydrous ferric oxide HFO . Biogenic magnetite in solutions buffered with either
- Published
- 2000
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41. Adsorption of phenol and chlorinated phenols from aqueous solution by tetramethylammonium- and tetramethylphosphonium-exchanged montmorillonite
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Ravi K. Kukkadapu, Stephen Boyd, and Monique A.M. Lawrence
- Subjects
Tetramethylammonium ,Chlorophenol ,chemistry.chemical_compound ,Sorbent ,Aqueous solution ,Adsorption ,chemistry ,Geochemistry and Petrology ,Inorganic chemistry ,Phenol ,Geology ,Sorption ,Phenols - Abstract
Sorption of phenol and 2-, 3- and 4-chlorophenol from water by tetramethylammonium (TMA)-smectite and tetramethylphosphonium (TMP)-smectite was studied. Sorption of the phenolic compounds appeared to occur on the aluminosilicate mineral surfaces between neighboring organic cations (TMA or TMP). TMP-smectite was a better sorbent than TMA-smectite, which did not measurably adsorb any of the phenolic compounds. This disparity in sorption efficiency was attributed to differences in hydration of the interlayer cations. Apparently, hydration occurred to a greater extent in TMA-smectite that in TMP-smectite, causing the interlayer pore size to be smaller for TMA-smectite than for TMP-smectite. TMP-smectite showed selective sorption within the group of chlorinated phenols studied. Phenol and 4-chlorophenol were effectively sorbed by TMP-smectite, whereas 2-and 3-chlorophenol were not sorbed. The selectivity appeared to be size- and shape-dependent, and not strongly influenced by water solubility.
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- 1998
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42. Tetramethylphosphonium- and Tetramethylammonium-Smectites as Adsorbents of Aromatic and Chlorinated Hydrocarbons: Effect of Water on Adsorption Efficiency
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Stephen Boyd and Ravi K. Kukkadapu
- Subjects
Aqueous solution ,Inorganic chemistry ,Soil Science ,Langmuir adsorption model ,Sorption ,Ethylbenzene ,chemistry.chemical_compound ,symbols.namesake ,Adsorption ,chemistry ,Geochemistry and Petrology ,Earth and Planetary Sciences (miscellaneous) ,symbols ,Alkylbenzenes ,Benzene ,Water Science and Technology ,BET theory - Abstract
Tetramethylphosphonium-smectite (TMP-clay) and tetramethylammonium-smectite (TMA-clay), were prepared and characterized as adsorbents for a series of aromatic and chlorinated hydrocarbons. The sorption of benzene, alkylbenzenes, and carbon tetrachloride as vapors and as solutes from water was studied to evaluate the effect of water on adsorption efficiency. Adsorption of organic vapors depended on the N2 BET surface area. TMA-clay was a slightly better adsorbent than TMP-clay, due to its somewhat higher surface area. The Langumir isotherms obtained indicated that adsorption occurred predominantly in the interlayer micropores, apparently on mineral surfaces between onium ions. Adsorption efficiency of both organo-clays decreased, compared to vapor sorptions, in presence of water. Lower sorption was apparently due to shrinkage of the interlayer pore or cavity sizes by hydration of interlayer TMA and TMP cations. Although sorption efficiencies of both organo-clays was reduced in presence of bulk water, the extent of reduction was much less for TMP-clay. Thus, TMP-clay was a better adsorbent than TMA-clay in presence of water, despite its lower surface area, in direct contrast to vapor sorption. The Langumir isotherms indicated interlayer sorption of benzene, alkylbenzenes and carbon tetrachloride from water by TMP-clay. The absence of Langumir isotherms for toluene, ethylbenzene and p-xylene uptake from water by TMA-clay indicated that these bulkier solutes were not adsorbed in the interlayers. These results indicate that hydration of TMA cations causes shrinkage of the interlayer pores to dimensions that exclude these solutes. The lower degree of hydration of TMP cations enables TMP-clay to maintain interlayer pores large enough to accommodate the bulkier alkylbenzenes.
- Published
- 1995
- Full Text
- View/download PDF
43. Bioavailability of Fe(III) in loess sediments : An important source of electron acceptors
- Author
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Hailiang Dong, Ravi K. Kukkadapu, Deb P. Jaisi, Junfeng Ji, and Michael E. Bishop
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Bioreduction ,Iron ,Energy-dispersive X-ray spectroscopy ,Soil Science ,Mineralogy ,Loess ,Electron donor ,Shewanella putrefaciens ,engineering.material ,Mineral Transformation ,chemistry.chemical_compound ,Geochemistry and Petrology ,Mössbauer spectroscopy ,Earth and Planetary Sciences (miscellaneous) ,Water Science and Technology ,chemistry.chemical_classification ,biology ,Chemistry ,Electron acceptor ,biology.organism_classification ,Illite ,engineering ,Clay minerals ,Nuclear chemistry - Abstract
Fe-reducing micro-organisms can change the oxidation state of structural Fe in clay minerals. The interactions with complex clays and clay minerals in natural materials remain poorly understood, however. The objective of this study was to determine if Fe(III) in loess was available as an electron acceptor and to study subsequent mineralogical changes. The loess samples were collected from St. Louis (Peoria), Missouri, USA, and Huanxia (HX) and Yanchang (YCH), in the Shanxi Province of China. The total Fe concentrations for the three samples was 1.69, 2.76, and 3.29 wt.%, respectively, and Fe(III) content was 0.48, 0.69, and 1.27 wt.%, respectively. All unreduced loess sediments contained Fe (oxyhydr)oxides and phyllosilicates. Bioreduction experiments were performed using Shewanella putrefaciens CN32 with lactate as the sole electron donor and Fe(III) in loess as the sole electron acceptor with and without anthraquinone-2, 6-disulfonate (AQDS) as an electron shuttle. Experiments were performed in non-growth (bicarbonate buffer) and growth (M1) media. The unreduced and bioreduced solids were analyzed by X-ray diffraction, Mossbauer spectroscopy, diffuse reflectance spectroscopy, and scanning electron microscopy/energy dispersive spectroscopy. Despite many similarities among the three loess samples, the extent and rate of Fe(III) reduction varied significantly. In the presence of AQDS the extent of reduction in the non-growth experiment was 25% of total Fe(III) in HX, 34% in Peoria, and 38% in YCH. The extent of reduction in the growth experiment was 72% in HX, 94% in Peoria, and 65% in YCH. The extent of bioreduction was less in the absence of AQDS. Overall, AQDS and the M1 growth medium significantly enhanced the rate and extent of bioreduction. Fe(III) in (oxyhydr)oxides and phyllosilicates was bioreduced. Siderite was absent in control samples, but was identified in bioreduced samples. The present research suggests that Fe(III) in loess sediments is an important potential source of electron acceptors that could support microbial activity under favorable conditions.
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- 2010
44. Microbial Reduction of Fe(III) in the Fifthian and Muloorina illites : Contrasting extents and rates of bioreduction
- Author
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Jennifer L. Seabaugh, John P. Morton, Dennis D. Eberl, Jinwook Kim, Ravi K. Kukkadapu, and Hailiang Dong
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Goethite ,Inorganic chemistry ,Soil Science ,Microbial Fe(III) Reduction ,Shewanella putrefaciens ,engineering.material ,Muloorina ,Geochemistry and Petrology ,Mössbauer spectroscopy ,Jarosite ,Earth and Planetary Sciences (miscellaneous) ,Dissolution ,Mossbauer Spectroscopy ,Water Science and Technology ,Aqueous solution ,CN32 ,biology ,Chemistry ,biology.organism_classification ,Fithian ,visual_art ,Illite ,engineering ,visual_art.visual_art_medium ,Clay minerals - Abstract
Shewanella putrefaciens CN32 reduces Fe(III) within two illites which have different properties: the Fithian bulk fraction and the
- Published
- 2006
45. Dissimilatory bacterial reduction of Al-substituted goethite in subsurface sediments
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John M. Zachara, Steven C. Smith, Chongxuan Liu, James K. Fredrickson, and Ravi K. Kukkadapu
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Aqueous solution ,Goethite ,biology ,Chemistry ,Inorganic chemistry ,Shewanella putrefaciens ,biology.organism_classification ,Adsorption ,Geochemistry and Petrology ,visual_art ,Mössbauer spectroscopy ,visual_art.visual_art_medium ,Kaolinite ,Crystallite ,Biomineralization - Abstract
The microbiologic reduction of a 0.2 to 2.0 μm size fraction of an Atlantic coastal plain sediment (Eatontown) was investigated using a dissimilatory Fe(III)-reducing bacterium (Shewanella putrefaciens, strain CN32) to evaluate mineralogic controls on the rate and extent of Fe(III) reduction and the resulting distribution of biogenic Fe(II). Mossbauer spectroscopy and X-ray diffraction (XRD) were used to show that the sedimentary Fe(III) oxide was Al-substituted goethite (13–17% Al) that existed as 1- to 5-μm aggregates of indistinct morphology. Bioreduction experiments were performed in two buffers [HCO3−; 1,4-piperazinediethansulfonic acid (PIPES)] both without and with 2,6-anthraquinone disulfonate (AQDS) as an electron shuttle. The production of biogenic Fe(II) and the distribution of Al (aqueous and sorbed) were followed over time, as was the formation of Fe(II) biominerals and physical/chemical changes to the goethite. The extent of reduction was comparable in both buffers. The reducibility (rate and extent) was enhanced by AQDS; 9% of dithionite-citrate-bicarbonate (DCB) extractable Fe(III) was reduced without AQDS whereas 15% was reduced in the presence of AQDS. XRD and Mossbauer spectroscopy were used to monitor the disposition of biogenic Fe(II) and changes to the Al-goethite. Fe(II) biomineralization was not evident by XRD. Biomineralization was observed by Mossbauer when sorbed Fe(II) concentrations exceeded a threshold value. The biomineralization products displayed Mossbauer spectra consistent with siderite FeCO3 (HCO3− buffer only) and green rust [Fe(6-x)IIFexIII(OH)12]x+[(A2−)x/2.yH2O]x−. Adsorption of biogenic Fe(II) to accessory mineral phases (e.g., kaolinite) and bacterial surfaces appeared to limit biomineralization. Al evolved during reduction was sorbed, and extractable Al increased with reduction. XRD analysis indicated that neither crystallite size or the Al content of the goethite was affected by bacterial reduction, i.e., Al release was congruent with Fe(II).
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