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Production and productivity of wheat crop is hampered by the biotic and abiotic stresses putting the world food security at risk. Among the biotic stresses, rusts are the major threat throughout the wheat growing areas in the world whereas Karnal bunt, powdery mildew, Fusarium head blight and loose smut are of minor importance. These diseases severely affect the yield and quality of wheat grain. Till date these diseases have been contained by the use of host resistance alongwith the chemical fungicides. However, the host resistance is overcome with the evolution of new virulent pathotypes. Deployment of diverse and durable sources of resistance in breeding programmes is the most economic and effective means of reducing yield losses caused by these diseases.With an aim to identify novel sources of resistance to these pathogens, 247 Indian wheat accessions were evaluated for multiple disease resistance at six different hot spots in order to identify potentially new sources of resistance. Of the 247 accessions of wheat, 14 accessions highly resistant to stripe rust, 142 for Leaf rust and 146 for stem rustwere identified. Thirty-two accessions were found resistant to all the three rusts. Thirty accessions showed immune reaction to powdery mildew and 61 were recorded resistant. Data obtained from spot blotch experiment revealed one accession immune to spot blotch infection while two accessions were recorded resistant with 10% infection. Karnal bunt (KB) resistance (infection level

Fusarium head blight (FHB) is global concern as recent outbreaks reported in Canada, Europe, Asia, Australia and South America. The disease has emerged as one of the most important plant diseases worldwide in 21st century. One of the major threats posed by FHB fungus is the mycotoxin production which is harmful to human and animal health. Development of disease resistant cultivars is the only effective method for managing the disease. Control of these pathogen / Fusarium spp. is also challenging due to limited sources of known resistance. The famous Chinese wheat cultivar Sumai 3 and Frontana are the main sources of resistance to this disease. For genetic analysis and incorporation of FHB resistance into recently released high yielding wheat cultivars, HD 2967 and DPW 621-50, crosses were made with Sumai 3, Frontana and Aldan. The F2 plants from the crosses HD 2967/Frontana (140), HD 2967/Aldan (150), HD 2967/Sumai 3 (169) and DPW 621-50/Sumai 3 (182) were screened for resistance under controlled conditions. Disease score was recorded to identify resistant, moderately resistant and susceptible plants. The genetic ratios for resistance to FHB indicated a complex nature of resistance in all the three donors.

Predictability estimated through cross-validation approach showed moderate to high level; hence, genomic selection approach holds great potential for biofortification breeding to enhance grain zinc and iron concentrations in wheat. Wheat (Triticum aestivum L.) is a major staple crop, providing 20 % of dietary energy and protein consumption worldwide. It is an important source of mineral micronutrients such as zinc (Zn) and iron (Fe) for resource poor consumers. Genomic selection (GS) approaches have great potential to accelerate development of Fe- and Zn-enriched wheat. Here, we present the results of large-scale genomic and phenotypic data from the HarvestPlus Association Mapping (HPAM) panel consisting of 330 diverse wheat lines to perform genomic predictions for grain Zn (GZnC) and Fe (GFeC) concentrations, thousand-kernel weight (TKW) and days to maturity (DTM) in wheat. The HPAM lines were phenotyped in three different locations in India and Mexico in two successive crop seasons (2011–12 and 2012–13) for GZnC, GFeC, TKW and DTM. The genomic prediction models revealed that the estimated prediction abilities ranged from 0.331 to 0.694 for Zn and from 0.324 to 0.734 for Fe according to different environments, whereas prediction abilities for TKW and DTM were as high as 0.76 and 0.64, respectively, suggesting that GS holds great potential in biofortification breeding to enhance grain Zn and Fe concentrations in bread wheat germplasm.

The original article was corrected. Author Muhammad Kundi should instead read: Muhammad Sohail.

To accelerate genetic gains in breeding, physiological trait (PT) characterization of candidate parents can help make more strategic crosses, increasing the probability of accumulating favorable alleles compared to crossing relatively uncharacterized lines. In this study, crosses were designed to complement “source” with “sink” traits, where at least one parent was selected for favorable expression of biomass and/or radiation use efficiency—source—and the other for sink-related traits like harvest-index, kernel weight and grains per spike. Female parents were selected from among genetic resources—including landraces and products of wide-crossing (i.e. synthetic wheat)—that had been evaluated in Mexico at high yield potential or under heat stress, while elite lines were used as males. Progeny of crosses were advanced to the F4 generation within Mexico, and F4-derived F5 and F6 generations were yield tested to populate four international nurseries, targeted to high yield environments (2nd and 3rd WYCYT) for yield potential, and heat stressed environments (2nd and 4th SATYN) for climate resilience, respectively. Each nursery was grown as multi-location yield trials. Genetic gains were achieved in both temperate and hot environments, with most new PT-derived lines expressing superior yield and biomass compared to local checks at almost all international sites. Furthermore, the tendency across all four nurseries indicated either the superiority of the best new PT lines compared with the CIMMYT elite checks, or the superiority of all new PT lines as a group compared with all checks, and in some cases, both. Results support—in a realistic breeding context—the hypothesis that yield and radiation use efficiency can be increased by improving source:sink balance, and validate the feasibility of incorporating exotic germplasm into mainstream breeding efforts to accelerate genetic gains for yield potential and climate resilience.

Small heat shock proteins (sHSP) are molecular chaperons which play a key role in protein homeostasis under stress conditions. Point mutation of aspartic acid (D) substitution for asparagine (N) at residue 11 (D11N) in HSP16.9B protein was predicted in HSP16.9B gene in wheat. However, its impact on protein function and structural consequences has not been explored. In this study, we examined the effect of point mutation using molecular modelling and molecular dynamics (MD) simulations. Moreover, point mutation induced addition of beta-sheet before the mutation position in the mutant protein. Three-dimensional homology protein modelling, structure validation, and molecular dynamics were carried out to investigate the conformational transitions and dynamics of the HSP16.9B protein due to D11N non-synonymous single nucleotide polymorphism (nsSNP). The MD results indicated that the stability of the mutant protein structure during entire simulation runs. Altogether, our investigation will provide useful understanding related to structural and functional basis of HSP16.9.

An ubiquitous molecular chaperon, small heat shock proteins (sHSP) maintain protein homeostasis under stress conditions. Single nucleotide polymorphism was predicted in HSP16.9B gene but so far its impact on protein structure has not been extensively studied. Keeping this point in mind, we applied computational methods and performed molecular dynamics simulation to examine the effect of aspartic acid substitution for asparagine at 11th position (D11N) in HSP16.9B. Furthermore, the secondary structural analysis revealed an addition of beta sheet before the mutation point in the mutant protein. Three dimensional protein structure modeling, validation of structures and molecular dynamics were performed to study the mechanism of the non-synonymous single nucleotide polymorphism on structural changes. The root mean square deviation (RMSD) result showed the stability of the mutated structure throughout simulations. Moreover, root mean square fluctuation (RMSF) of atoms and Hydrogen-bond patterns further supported our results.

Heat and drought adaptive quantitative trait loci (QTL) in a spring bread wheat population resulting from the Seri/Babax cross designed to minimize confounding agronomic traits have been identified previously in trials conducted in Mexico. The same population was grown across a wide range of environments where heat and drought stress are naturally experienced including environments in Mexico, West Asia, North Africa (WANA), and South Asia regions. A molecular genetic linkage map including 475 marker loci associated to 29 linkage groups was used for QTL analysis of yield, days to heading (DH) and to maturity (DM), grain number (GM2), thousand kernel weight (TKW), plant height (PH), canopy temperature at the vegetative and grain filling stages (CTvg and CTgf), and early ground cover. A QTL for yield on chromosome 4A was confirmed across several environments, in subsets of lines with uniform allelic expression of a major phenology QTL, but not independently from PH. With terminal stress, TKW QTL was linked or pleiotropic to DH and DM. The link between phenology and TKW suggested that early maturity would favor the post-anthesis grain growth periods resulting in increased grain size and yields under terminal stress. GM2 and TKW were partially associated with markers at different positions suggesting different genetic regulation and room for improvement of both traits. Prediction accuracy of yield was improved by 5 % when using marker scores of component traits (GM2 and DH) together with yield in multiple regression. This procedure may provide accumulation of more favorable alleles during selection.

The abundance and inherent potential for extensive allelic variations in simple sequence repeats (SSRs) or microsatellites resulted in valuable source for genetic markers in eukaryotes. In this study, we analyzed and compared the abundance and organisation of SSR in the genome of two important fungal pathogens of wheat, brown or leaf rust (Puccinia triticina) and black or stem rust (Puccinia graminis f. sp. tritici). P. triticina genome with two fold genome size as compared to P. graminis tritici has lower relative abundance and SSR density. The distribution pattern of different SSR motifs provides the evidence of greater accumulation of dinucleotide followed by trinucleotide repeats. More than two-hundred different types of repeat motifs were observed in the genomes. The longest SSR motifs varied in both genomes and some of the repeat motifs are found in higher frequency. The information about survey of relative abundance, relative density, length and frequency of different repeat motifs in Puccinia sp. will be useful for developing SSR markers that could find several applications in analysis of fungal genome such as genetic diversity, population genetics, race identification and acquisition of new virulence.

Wheat is the second major staple crop, after rice, in India and Pakistan and is also gaining similar importance in Nepal and Bangladesh. Wheat production in South Asia has increased from 15 mt in 1960s to 95.5 mt during 2004–2005. It still needs to grow at the rate of 2–2.5% annually until the middle of 21st century. However, for India, recent estimations have shown a growth requirement of about 1.1%. Although the wheat improvement programs in these countries, with the active collaboration of national agricultural research centers (NARS) and CIMMYT, has made a significant progress, it is a matter of significant concern that wheat production has stagnated for last few years. Since there is little scope for increasing land area under wheat, the major challenge will be to break the yield barrier by pragmatic genetic and developmental approaches. The most serious constraints to wheat production in this region are a host of biotic and abiotic stresses. Although India has not faced any rust epidemic in the last decade, rusts continue to occupy the place of most dangerous pathogen for the region. Among the abiotic stresses, unusual warming trends during grain filling period are causing yield declines, especially in eastern and central India. There are other challenges that are specific to the highly productive rice–wheat cropping system predominant in the Indo-Gangetic plains. The total factor productivity of this system is declining due to depletion of soil organic carbon. Addition of organic matter to soil through green manuring and crop residue recycling, balanced fertilization, integrated nutrient management, diversification of rice-wheat system are some of the possible remedial measures to improve total factor productivity. The international linkages with CIMMYT needs to be strengthened more closely for developing more productive wheat genotypes and thus, achieving wheat targets in the South Asian region.

India is the second largest producer of wheat in the world, with production hovering around 68–75 million tons for past few years. The latest estimated demand for wheat production for the year 2020 is approximately 87.5 million tons, or about 13 million tons more than the record production of 75 million tons harvested in crop season 1999–2000. Since 2000, India has struggled to match that record production figure and thus faces a critical challenge in maintaining food security in the face of its growing population. The current major challenges facing future wheat production in India are increasing heat stress; dwindling water supplies for irrigation; a growing threat of new virulence of diseases such as wheat rusts (yellow, brown, and black) and leaf blight; continuous adoption of rice-wheat systems on around 11 million hectares; changes in urbanization patterns, and demand for better quality wheat. In addition, the threat posed by the new stem rust race Ug99 can not be underestimated. The wide gap (around 2.5 t/ha) between the potential and harvested yield in the eastern Gangetic Plains also cries out for solutions. Addressing issues related to different stresses will require harnessing genes discovered in landraces and wild relatives following conventional as well as non-conventional approaches. For effective technology delivery in areas that suffer from poor linkages with farmers, participatory research needs to be strengthened. The future germplasm requirements from a dependable collaborator such as CIMMYT are largely being dictated by the above factors.

There are many socioeconomic and technological constraints that affect the production of wheat and other staple cereals in South Asia. Wheat production is one of the economic mainstays in South Asia, but the yield gap between farmers’ fields and experimental yields is wide across the region. For the last 3 years, CIMMYT and the CAZS-NR have been collaborating with farmers, NARS, and other South Asian partners to promote improved wheat varieties and new resource conservation technologies (RCTs) in farmers’ fields. Participation fostered among farmers, scientists, extension specialists, NGOs and the private sector included variety selection (PVS), and evaluation of agronomic practices. Through PVS, several farmer-preferred technologies have been identified including wheat varieties for adverse conditions in eastern Uttar Pradesh (India) and for boron deficiency in parts of Nepal. There has been considerable improvement in the access of farmers to new varieties and technologies in the rural areas. Yield increases (15–70%) have been achieved by resource-poor farmers over the existing varieties through the adoption of new varieties and RCTs. The farmers have also made substantial cost savings and achieved higher yields through resource-conserving agronomic techniques such as zero till. Seed of the new farmer-selected cultivars has been multiplied by groups of collaborating farmers and widely distributed.

The antioxidant system in plants is a very important defensive mechanism to overcome stress conditions. We examined the expression profile of antioxidant enzymes superoxide dismutase (SOD), catalase (CAT) and ascorbate peroxidase (APX) using a bioinformatics approach. We explored secondary structure prediction and made detailed studies of signature pattern of antioxidant proteins in four plant species (Triticum aestivum, Arabidopsis thaliana, Oryza sativa, and Brassica juncea). Fingerprinting analysis was done with ScanProsite, which includes a large collection of biologically meaningful signatures. Multiple sequence alignment of antioxidant proteins of the different plant species revealed a conserved secondary structure region, indicating homology at the sequence and structural levels. The secondary structure prediction showed that these proteins have maximum tendency for α helical structure. The sequence level similarities were also analyzed with a phylogenetic tree using neighbor-joining method. In the antioxidant enzymes SOD, CAT and APX, three major families of signature were predominant and common; these were PKC_PHOSPHO_SITE, CK2_PHOSPHO_SITE and N-myristoylation site, which are functionally related to various plant signaling pathways. This study provides new strategies for screening of biomodulators involved in plant stress metabolism that will be useful for designing degenerate primers or probes specific for antioxidant. These enzymes could be the first line of defence in the cellular antioxidant defence pathway, activated due to exposure to abiotic stresses.

Major facilitators of water movement through plant cell membranes include aquaporin proteins. Wheat is among the largest and most important cereal crops worldwide; however, unlike other model plants such as rice, maize and Arabidopsis, little has been reported on wheat major intrinsic proteins (MIPs). This study presents a comprehensive computational identification of 349 new wheat expressed sequence tags (ESTs), encoding 13 wheat aquaporin genes. Identified aquaporins consist of 6 plasma membrane intrinsic proteins (PIP) and 1 TIP showing high sequence similarity with rice aquaporins. We also identified 4 NOD26-like intrinsic proteins (NIP) and 2 SIP members that showed more divergence. Further, expression analysis of the aquaporin genes using the available EST information in UniGene revealed their transcripts were differentially regulated in various stress- and tissue-specific libraries. Allele specific Polymerase chain reaction (PCR) primers based on single nucleotide polymorphism (SNP) were designed using PIP as the target gene and validated on a core set of Indian wheat genotypes. A 3D theoretical model of the wheat aquaporin protein was built by homology modeling and could prove to be useful in the further functional characterization of this protein. Collectively with expression and bioinformatics analysis, our results support the idea that the genes identified in this study signify an important genetic resource providing potential targets to modify the water use properties of wheat.

The abundance and inherent potential for variations in simple sequence repeats (SSRs) or microsatellites resulted in valuable source for genetic markers in eukaryotes. We describe the organization and abundance of SSRs in fungus Fusarium graminearum (causative agent for Fusarium head blight or head scab of wheat). We identified 1705 SSRs of various nucleotide repeat motifs in the sequence database of F. graminearum. It is observed that mononucleotide repeats (62%) were most abundant followed by di- (20%) and trinucleotide repeats (14%). It is noted that tetra-, penta- and hexanucleotide repeats accounted for only 4% of SSRs. The estimated frequency of Class I SSRs (perfect repeats ≥20 nucleotides) was one SSR per 124.5 kb, whereas the frequency of Class II (perfect repeats >10 nucleotides and ≫20 nucleotides) was one SSR per 25.6 kb. The dynamics of SSRs will be a powerful tool for taxonomic, phylogenetic, genome mapping and population genetic studies as SSR based markers show high levels of allelic variation, codominant inheritance and ease of analysis.