Search

Your search keyword '"Pitluck, S"' showing total 4 results
Start Over Author "Pitluck, S" Topic genetics
4 results on '"Pitluck, S"'

1. Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds

Author

Hwang, C, Copeland, A, Lucas, S, Lapidus, A, Barry, K, Detter, JC, del Rio, T Glavina, Hammon, N, Israni, S, Dalin, E, Tice, H, Pitluck, S, Chertkov, O, Brettin, T, Bruce, D, Han, C, Schmutz, J, Larimer, F, Land, ML, Hauser, L, Kyrpides, N, Mikhailova, N, Ye, Q, Zhou, J, Richardson, P, and Fields, MW

Subjects
Microbiology, Biological Sciences, Genetics, Human Genome, Biochemistry and Cell Biology
Abstract

Alkaliphilus metalliredigens strain QYMF is an anaerobic, alkaliphilic, and metal-reducing bacterium associated with phylum Firmicutes QYMF was isolated from alkaline borax leachate ponds. The genome sequence will help elucidate the role of metal-reducing microorganisms under alkaline environments, a capability that is not commonly observed in metal respiring-microorganisms.

Published
2016

2. Complete genome sequence of riemerella anatipestifer type strain (ATCC 11845 T)

Author

Mavromatis, K, Lu, M, Misra, M, Lapidus, A, Nolan, M, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Jeffries, CD, Detter, JC, Brambilla, EM, Rohde, M, Göker, M, Gronow, S, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP, and Kyrpides, NC

Subjects
Biochemistry and Cell Biology, Genetics
Abstract

Riemerella anatipestifer (Hendrickson and Hilbert 1932) Segers et al. 1993 is the type species of the genus Riemerella, which belongs to the family Flavobacteriaceae. The species is of in-terest because of the position of the genus in the phylogenetic tree and because of its role as a pathogen of commercially important avian species worldwide. This is the first completed genome sequence of a member of the genus Riemerella. The 2,155,121 bp long genome with its 2,001 protein-coding and 51 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Published
2011

3. Complete genome sequence of Halogeometricum borinquense type strain (PR3T)

Author

Malfatti, S, Tindall, BJ, Schneider, S, Fähnrich, R, Lapidus, A, LaButtii, K, Copeland, A, Del Rio, TG, Nolan, M, Chen, F, Lu-cas, S, Tice, H, Cheng, JF, Bruce, D, Goodwin, L, Pitluck, S, An-derson, I, Pati, A, Ivanova, N, Mavromatis, K, Chen, A, Pa-laniappan, K, D'haeseleer, P, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP, and Chain, P

Subjects
Biochemistry and Cell Biology, Genetics
Abstract

Halogeometricum borinquense Montalvo-Rodríguez et al. 1998 is the type species of the ge-nus, and is of phylogenetic interest because of its distinct location between the halobacterial genera Haloquadratum and Halosarcina. H. borinquense requires extremely high salt (NaCl) concentrations for growth. It can not only grow aerobically but also anaerobically using ni-trate as electron acceptor. The strain described in this report is a free-living, motile, pleomor-phic, euryarchaeon, which was originally isolated from the solar salterns of Cabo Rojo, Puer-to Rico. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the halobacterial genus Halogeometricum, and this 3,944,467 bp long six replicon genome with its 3937 pro-tein-coding and 57 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Published
2009

4. The ecoresponsive genome of Daphnia pulex

Author

Colbourne, J. K., Pfrender, M. E., Gilbert, D., Thomas, W. K., Tucker, A., Oakley, T. H., Tokishita, S., Aerts, A., Arnold, G. J., Basu, M. K., Bauer, D. J., C當eres, C. E., Carmel, L., Casola, C., Choi, J. H., Detter, J. C., Dong, Q., Dusheyko, S., Eads, B. D., Frlich, T., Geiler-Samerotte, K. A., Gerlach, D., Hatcher, P., Jogdeo, S., Krijgsveld, J., Kriventseva, E. V., K�ltz, D., Laforsch, C., Lindquist, E., Lopez, J., Manak, J. R., Muller, J., Pangilinan, J., Patwardhan, R. P., Pitluck, S., Pritham, E. J., Rechtsteiner, A., Rho, M., Rogozin, I. B., Sakarya, O., Salamov, A., Schaack, S., Shapiro, H., Shiga, Y., Skalitzky, C., Smith, Z., Souvorov, A., Sung, W., Tang, Z., Tsuchiya, D., Tu, H., Vos, H., Wang, M., Wolf, Y. I., Yamagata, H., Yamada, Takuji, Ye, Y., Shaw, J. R., Andrews, J., Crease, T. J., Tang, H., Lucas, S. M., Robertson, H. M., Bork, P., Koonin, E. V., Zdobnov, E. M., Grigoriev, I. V., Lynch, M., Boore, J. L., Gerlach, Daniel, Kriventseva, Evgenia, and Zdobnov, Evgeny

Subjects
0106 biological sciences, Molecular Sequence Data, Gene Conversion, Gene Expression, Biology, Environment, 010603 evolutionary biology, 01 natural sciences, Genome, Daphnia pulex, Evolution, Molecular, 03 medical and health sciences, Genes, Duplicate, Gene Duplication, Gene duplication, Gene family, Animals, ddc:576.5, Gene conversion, Amino Acid Sequence, Gene, Ecosystem, Phylogeny, 030304 developmental biology, Regulation of gene expression, Genetics, 0303 health sciences, Multidisciplinary, Base Sequence, Daphnia/genetics/physiology, Metabolic Networks and Pathways/genetics, Gene Expression Profiling, fungi, Chromosome Mapping, Molecular Sequence Annotation, Sequence Analysis, DNA, biology.organism_classification, Adaptation, Physiological, Gene expression profiling, Daphnia, Gene Expression Regulation, Genes, Multigene Family, Metabolic Networks and Pathways
Abstract

We describe the draft genome of the microcrustacean Daphnia pulex, which is only 200 megabases and contains at least 30,907 genes. The high gene count is a consequence of an elevated rate of gene duplication resulting in tandem gene clusters. More than a third of Daphnia's genes have no detectable homologs in any other available proteome, and the most amplified gene families are specific to the Daphnia lineage. The coexpansion of gene families interacting within metabolic pathways suggests that the maintenance of duplicated genes is not random, and the analysis of gene expression under different environmental conditions reveals that numerous paralogs acquire divergent expression patterns soon after duplication. Daphnia-specific genes, including many additional loci within sequenced regions that are otherwise devoid of annotations, are the most responsive genes to ecological challenges.

Published
2011
Full Text
View/download PDF

Catalog

Books, media, physical & digital resources
See catalog results