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The white shark, Carcharodon carcharias, is both one of the largest apex predators in the world and among the most heavily protected marine fish. Population genetic diversity is in part shaped by recent demographic history and can thus provide information complementary to more traditional population assessments, which are difficult to obtain for white sharks and have at times been controversial. Here, we use the mitochondrial control region and 14 nuclear-encoded microsatellite loci to assess white shark genetic diversity in 2 regions: the Northwest Atlantic (NWA, N = 35) and southern Africa (SA, N = 131). We find that these 2 regions harbor genetically distinct white shark populations (Φ ST = 0.10, P < 0.00001; microsatellite F ST = 0.1057, P < 0.021). M-ratios were low and indicative of a genetic bottleneck in the NWA (M-ratio = 0.71, P < 0.004) but not SA (M-ratio = 0.85, P = 0.39). This is consistent with other evidence showing a steep population decline occurring in the mid to late 20th century in the NWA, whereas the SA population appears to have been relatively stable. Estimates of effective population size ranged from 22.6 to 66.3 (NWA) and 188 to 1998.3 (SA) and evidence of inbreeding was found (primarily in NWA). Overall, our findings indicate that white population dynamics within NWA and SA are determined more by intrinsic reproduction than immigration and there is genetic evidence of a population decline in the NWA, further justifying the strong domestic protective measures that have been taken for this species in this region. Our study also highlights how assessment of genetic diversity can complement other sources of information to better understand the status of threatened marine fish populations., (© The American Genetic Association 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)

While dorsal-ventrally compressed chondrichthyans are among the most imperiled fishes in the world, there is still limited knowledge of the biology of many of these species, even in well-studied ocean basins. In the western North Atlantic Ocean, the population structure of the Atlantic angel shark (Squatina dumeril) is not fully understood; therefore, the portioning of genetic variation was assessed among individuals caught along the east coast of the United States (Atlantic) and on the northern Gulf of Mexico (Gulf) using reduced representation genomics and mitochondrial sequencing. Three distinct groups were delineated with nuclear data, the Atlantic, the eastern Gulf, and the western Gulf, along boundaries described by previous research. Mitochondrial data only resolved two groups, with the western Gulf separated from the eastern Gulf and Atlantic combined. Demographic modeling suggested that the Atlantic population separated from a single Gulf population which subsequently split into eastern and western populations. Additionally, there was evidence that adjacent populations experienced gene flow after splitting, which may explain the incongruence between results based on nuclear and mtCR data. Correlations between environmental variables and allele frequencies at 873 loci indicated potential local adaptation. Therefore, the preservation of all three groups is necessary for the conservation of long-term adaptive variation important for species persistence. [ABSTRACT FROM AUTHOR]

Patterns of genetic variation reflect interactions among microevolutionary forces that vary in strength with changing demography. Here, patterns of variation within and among samples of the mouthbrooding gafftopsail catfish (Bagre marinus, Family Ariidae) captured in the U.S. Atlantic and throughout the Gulf of Mexico were analyzed using genomics to generate neutral and non‐neutral SNP data sets. Because genomic resources are lacking for ariids, linkage disequilibrium network analysis was used to examine patterns of putatively adaptive variation. Finally, historical demographic parameters were estimated from site frequency spectra. The results show four differentiated groups, corresponding to the (1) U.S. Atlantic, and the (2) northeastern, (3) northwestern, and (4) southern Gulf of Mexico. The non‐neutral data presented two contrasting signals of structure, one due to increases in diversity moving west to east and north to south, and another to increased heterozygosity in the Atlantic. Demographic analysis suggested that recently reduced long‐term effective population size in the Atlantic is likely an important driver of patterns of genetic variation and is consistent with a known reduction in population size potentially due to an epizootic. Overall, patterns of genetic variation resemble that of other fishes that use the same estuarine habitats as nurseries, regardless of the presence/absence of a larval phase, supporting the idea that adult/juvenile behavior and habitat are important predictors of contemporary patterns of genetic structure. Gafftopsail catfish show high levels of genetic structuring across their distribution in the U.S., Atlantic and Gulf of Mexico. Non‐neutral data present two contrasting signals of structure and historical demography is likely an important driver of patterns of neutral and non‐neutral genetic variation. Results of this study are similar to what is seen in other fishes that use the same estuarine habitats as nurseries, but gafftopsail catfish lack a larval phase, supporting the idea that adult/juvenile behavior and habitat use are important predictors of contemporary patterns of genetic structure. [ABSTRACT FROM AUTHOR]

Understanding how interactions among microevolutionary forces generate genetic population structure of exploited species is vital to the implementation of management policies that facilitate persistence. Philopatry displayed by many coastal shark species can impact gene flow and facilitate selection, and has direct implications for the spatial scales of management. Here, genetic structure of the blacktip shark (Carcharhinus limbatus) was examined using a mixed‐marker approach employing mitochondrial control region sequences and 4339 SNP‐containing loci generated using ddRAD‐Seq. Genetic variation was assessed among young‐of‐the‐year sampled in 11 sites in waters of the United States in the western North Atlantic Ocean, including the Gulf of Mexico. Spatial and environmental analyses detected 68 nuclear loci putatively under selection, enabling separate assessments of neutral and adaptive genetic structure. Both mitochondrial and neutral SNP data indicated three genetically distinct units—the Atlantic, eastern Gulf, and western Gulf—that align with regional stocks and suggest regional philopatry by males and females. Heterogeneity at loci putatively under selection, associated with temperature and salinity, was observed among sites within Gulf units, suggesting local adaptation. Furthermore, five pairs of siblings were identified in the same site across timescales corresponding with female reproductive cycles. This indicates that females re‐used a site for parturition, which has the potential to facilitate the sorting of adaptive variation among neighbouring sites. The results demonstrate differential impacts of microevolutionary forces at varying spatial scales and highlight the importance of conserving essential habitats to maintain sources of adaptive variation that may buffer species against environmental change. [ABSTRACT FROM AUTHOR]