8 results on '"James P Flynn"'
Search Results
2. Vaccine breakthrough infection leads to distinct profiles of neutralizing antibody responses by SARS-CoV-2 variant
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Michael S. Seaman, Mark J. Siedner, Julie Boucau, Christy L. Lavine, Fadi Ghantous, May Y. Liew, Josh I. Mathews, Arshdeep Singh, Caitlin Marino, James Regan, Rockib Uddin, Manish C. Choudhary, James P. Flynn, Geoffrey Chen, Ashley M. Stuckwisch, Taryn Lipiner, Autumn Kittilson, Meghan Melberg, Rebecca F. Gilbert, Zahra Reynolds, Surabhi L. Iyer, Grace C. Chamberlin, Tammy D. Vyas, Jatin M. Vyas, Marcia B. Goldberg, Jeremy Luban, Jonathan Z. Li, Amy K. Barczak, and Jacob E. Lemieux
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AIDS Vaccines ,COVID-19 Vaccines ,SARS-CoV-2 ,SAIDS Vaccines ,COVID-19 ,Convalescence ,General Medicine ,Antibodies, Viral ,Antibodies, Neutralizing ,Influenza Vaccines ,Neutralization Tests ,BCG Vaccine ,Respiratory Syncytial Virus Vaccines ,Humans ,Papillomavirus Vaccines ,Diphtheria-Tetanus-Pertussis Vaccine ,Measles-Mumps-Rubella Vaccine - Abstract
Protective immunity against SARS-CoV-2 infection after COVID-19 vaccination may differ by variant. We enrolled vaccinated (n = 39) and unvaccinated (n = 11) individuals with acute, symptomatic SARS-CoV-2 Delta or Omicron infection and performed SARS-CoV-2 viral load quantification, whole-genome sequencing, and variant-specific antibody characterization at the time of acute illness and convalescence. Viral load at the time of infection was inversely correlated with antibody binding and neutralizing antibody responses. Across all variants tested, convalescent neutralization titers in unvaccinated individuals were markedly lower than in vaccinated individuals. Increases in antibody titers and neutralizing activity occurred at convalescence in a variant-specific manner. For example, among individuals infected with the Delta variant, neutralizing antibody responses were weakest against BA.2, whereas infection with Omicron BA.1 variant generated a broader response against all tested variants, including BA.2.
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- 2022
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3. A General Approach to O ‐Sulfation by a Sulfur(VI) Fluoride Exchange Reaction
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Seung Hwang, Samantha L. Ferraro, Jia Niu, Chao Liu, James P. Flynn, and Cangjie Yang
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Glycosylation ,Carbohydrate chemistry ,chemistry.chemical_element ,Disaccharides ,010402 general chemistry ,01 natural sciences ,Article ,Catalysis ,Fluorides ,chemistry.chemical_compound ,Hydrolysis ,Sulfation ,Molecule ,Amino Acids ,Sulfate ,Sulfates ,010405 organic chemistry ,Aryl ,Monosaccharides ,General Medicine ,General Chemistry ,Combinatorial chemistry ,Sulfur ,0104 chemical sciences ,chemistry ,Fluoride - Abstract
O-Sulfation is an important chemical code widely existing in bioactive molecules, but the scalable and facile synthesis of complex bioactive molecules carrying O-sulfation remains challenging. Herein, we report a general approach to O-sulfation via the Sulfur (VI) Fluoride Exchange (SuFEx) reaction between aryl fluorosulfates and silylated hydroxyl groups. Efficient sulfate diester formation was achieved through systematic optimization of the electronic properties of aryl fluorosulfates. The versatility of this O-sulfation strategy was demonstrated in the scalable syntheses of a variety of complex molecules carrying sulfate diesters at various positions, including monosaccharides, disaccharides, amino acid, and steroid. Selective hydrolytic and hydrogenolytic removal of the aryl masking groups from sulfate diesters yielded the corresponding O-sulfated products in excellent yields. This strategy provides a powerful tool for the synthesis of O-sulfated bioactive compounds.
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- 2020
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4. Duration of viral shedding and culture positivity with postvaccination SARS-CoV-2 delta variant infections
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Mark J. Siedner, Julie Boucau, Rebecca F. Gilbert, Rockib Uddin, Jonathan Luu, Sebastien Haneuse, Tammy Vyas, Zahra Reynolds, Surabhi Iyer, Grace C. Chamberlin, Robert H. Goldstein, Crystal M. North, Chana A. Sacks, James Regan, James P. Flynn, Manish C. Choudhary, Jatin M. Vyas, Amy K. Barczak, Jacob E. Lemieux, and Jonathan Z. Li
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Adult ,Male ,COVID-19 Vaccines ,Time Factors ,SARS-CoV-2 ,COVID-19 ,Humans ,Female ,General Medicine ,Middle Aged ,Virus Replication ,Virus Shedding - Abstract
Isolation guidelines for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) are largely derived from data collected prior to the emergence of the delta variant. We followed a cohort of ambulatory patients with postvaccination breakthrough SARS-CoV-2 infections with longitudinal collection of nasal swabs for SARS-CoV-2 viral load quantification, whole-genome sequencing, and viral culture. All delta variant infections in our cohort were symptomatic, compared with 64% of non-delta variant infections. Symptomatic delta variant breakthrough infections were characterized by higher initial viral load, longer duration of virologic shedding by PCR, greater likelihood of replication-competent virus at early stages of infection, and longer duration of culturable virus compared with non-delta variants. The duration of time since vaccination was also correlated with both duration of PCR positivity and duration of detection of replication-competent virus. Nonetheless, no individuals with symptomatic delta variant infections had replication-competent virus by day 10 after symptom onset or 24 hours after resolution of symptoms. These data support US CDC isolation guidelines as of November 2021, which recommend isolation for 10 days or until symptom resolution and reinforce the importance of prompt testing and isolation among symptomatic individuals with delta breakthrough infections. Additional data are needed to evaluate these relationships among asymptomatic and more severe delta variant breakthrough infections.
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- 2022
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5. SARS-CoV-2 Viremia is Associated with Distinct Proteomic Pathways and Predicts COVID-19 Outcomes
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Alexis M. Schneider, Kendall M. Lavin-Parsons, Brendan M. Lilly, Jonathan Z. Li, Marcia B. Goldberg, Molly Thomas, Irena Gushterova, Anna L.K. Gonye, Maricarmen Rojas-Lopez, Yijia Li, Brenna N. McKaig, Michael R. Filbin, James Regan, Jessica Tantivit, Nir Hacohen, Kasidet Manakongtreecheep, Brian C. Russo, Nicole C. Charland, Moshe Sade-Feldman, Blair A. Parry, Nihaarika Sharma, Thomas J. LaSalle, Kyle R. Kays, Matteo Gentili, Arnav Mehta, Justin D. Margolin, James P. Flynn, Alexandra-Chloé Villani, Hargun K. Khanna, and Carl L. Lodenstein
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0301 basic medicine ,Oncology ,Male ,Proteomics ,Proteome ,medicine.medical_treatment ,viruses ,Disease ,Severity of Illness Index ,Cohort Studies ,0302 clinical medicine ,Aged, 80 and over ,Gastrointestinal tract ,virus diseases ,General Medicine ,Middle Aged ,Prognosis ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Cohort ,Female ,Translational science ,Viral load ,Cohort study ,Adult ,medicine.medical_specialty ,Endothelium ,Viremia ,Models, Biological ,Article ,03 medical and health sciences ,Internal medicine ,Severity of illness ,medicine ,Humans ,Pandemics ,Aged ,Mechanical ventilation ,Host Microbial Interactions ,business.industry ,SARS-CoV-2 ,COVID-19 ,Odds ratio ,Virus Internalization ,medicine.disease ,030104 developmental biology ,Infectious disease (medical specialty) ,Immunology ,Clinical Medicine ,business ,Biomarkers - Abstract
BACKGROUND: SARS-CoV-2 plasma viremia has been associated with severe disease and death in COVID-19 in small-scale cohort studies. The mechanisms behind this association remain elusive. METHODS: We evaluated the relationship between SARS-CoV-2 viremia, disease outcome, and inflammatory and proteomic profiles in a cohort of COVID-19 emergency department participants. SARS-CoV-2 viral load was measured using a quantitative reverse transcription PCR–based platform. Proteomic data were generated with Proximity Extension Assay using the Olink platform. RESULTS: This study included 300 participants with nucleic acid test–confirmed COVID-19. Plasma SARS-CoV-2 viremia levels at the time of presentation predicted adverse disease outcomes, with an adjusted OR of 10.6 (95% CI 4.4–25.5, P < 0.001) for severe disease (mechanical ventilation and/or 28-day mortality) and 3.9 (95% CI 1.5–10.1, P = 0.006) for 28-day mortality. Proteomic analyses revealed prominent proteomic pathways associated with SARS-CoV-2 viremia, including upregulation of SARS-CoV-2 entry factors (ACE2, CTSL, FURIN), heightened markers of tissue damage to the lungs, gastrointestinal tract, and endothelium/vasculature, and alterations in coagulation pathways. CONCLUSION: These results highlight the cascade of vascular and tissue damage associated with SARS-CoV-2 plasma viremia that underlies its ability to predict COVID-19 disease outcomes. FUNDING: Mark and Lisa Schwartz; the National Institutes of Health (U19AI082630); the American Lung Association; the Executive Committee on Research at Massachusetts General Hospital; the Chan Zuckerberg Initiative; Arthur, Sandra, and Sarah Irving for the David P. Ryan, MD, Endowed Chair in Cancer Research; an EMBO Long-Term Fellowship (ALTF 486-2018); a Cancer Research Institute/Bristol Myers Squibb Fellowship (CRI2993); the Harvard Catalyst/Harvard Clinical and Translational Science Center (National Center for Advancing Translational Sciences, NIH awards UL1TR001102 and UL1TR002541-01); and by the Harvard University Center for AIDS Research (National Institute of Allergy and Infectious Diseases, 5P30AI060354).
- Published
- 2021
6. Facile Synthesis of Sequence‐Regulated Synthetic Polymers Using Orthogonal SuFEx and CuAAC Click Reactions
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Jia Niu, Cangjie Yang, and James P. Flynn
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chemistry.chemical_classification ,Chemical substance ,010405 organic chemistry ,Sequence (biology) ,General Medicine ,General Chemistry ,Polymer ,010402 general chemistry ,01 natural sciences ,Combinatorial chemistry ,Catalysis ,Cycloaddition ,Coupling reaction ,0104 chemical sciences ,chemistry ,Yield (chemistry) ,Copolymer ,Science, technology and society - Abstract
The orthogonal sulfur-fluoride exchange reaction (SuFEx) and copper(I)-catalyzed azide-alkyne cycloaddition (CuAAC) are employed to synthesize sequence-regulated synthetic polymers. The high efficiency and broad tolerance of SuFEx and CuAAC to diverse chemical functionalities enable the one-pot synthesis of polydispersed sequence-controlled polymers by step-growth copolymerization in high yield and sequence complexity. Furthermore, iterative SuFEx and CuAAC coupling reactions on a solid support, without the need of protecting groups, afford monodispersed sequence-defined oligomers. The use of this orthogonal pair of click reactions provides new opportunities to facilely access sequence-regulated synthetic polymers with a high degree of structural diversity.
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- 2018
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7. Berichtigung: Facile Synthesis of Sequence-Regulated Synthetic Polymers Using Orthogonal SuFEx and CuAAC Click Reactions
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Cangjie Yang, James P. Flynn, and Jia Niu
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General Medicine - Published
- 2019
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8. War Crimes during the Persian Gulf War
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William N. Bernhard, Robert A. Barish, Mohamed S. Al-Ibrahim, and James P Flynn
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medicine.medical_specialty ,Desert (philosophy) ,business.industry ,Public health ,Public Health, Environmental and Occupational Health ,Poison control ,General Medicine ,Military personnel ,Health facility ,Environmental health ,Law ,Accountability ,Medicine ,War crime ,business ,Geneva Conventions - Abstract
Evidence of violations of the 1949 Geneva Conventions by Iraq's military personnel during Desert Shield and Desert Storm are described and adverse effects on the Kuwaiti health care delivery system are discussed. New diplomatic and military initiatives that include education and accountability are needed to ensure better compliance with international conventions designed to protect victims of war. Language: en
- Published
- 1992
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