46 results on '"Yann Ferrand"'
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2. Foldaxanes: Rotaxane-like Architectures from Foldamers
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Victor Koehler, Arundhati Roy, Ivan Huc, and Yann Ferrand
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Rotaxanes ,General Medicine ,General Chemistry - Abstract
Mechanically interlocked molecules such as rotaxanes and catenanes contain free-moving components that cannot dissociate and have enabled the investigation and control of various translational and rotational molecular motions. The architecture of pseudo-rotaxanes and of some kinetically labile rotaxanes is comparable to that of rotaxanes but their components are reversibly associated and not irreversibly interlocked. In other words, pseudo-rotaxanes may fall apart. This Account focuses on a peculiar family of rotaxane-like architectures termed foldaxanes.Foldaxanes consist of a helically folded oligomer wound around a rod-like dumbbell-shaped guest. Winding of the helix around the rod thus entails an unwinding-rewinding process that creates a kinetic barrier. It follows that foldaxanes, albeit reversibly assembled, have significant lifetimes and may not fall apart while defined molecular motions are triggered. Foldaxanes based on helically folded aromatic oligoamide hosts and oligo(alkyl carbamate) guests can be designed rationally through the inclusion of complementary binding motifs on the rod and at the inner rim of the helix so that helix length and rod length match. Single helical foldaxanes (bimolecular species) and double helical foldaxanes (trimolecular species) have thus been produced as well as poly[
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- 2022
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3. A pH-and Metal-Actuated Molecular Shuttle in Water
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Amine Kriat, Simon Pascal, Brice Kauffmann, Yann Ferrand, David Bergé‐Lefranc, Didier Gigmes, Olivier Siri, Anthony Kermagoret, David Bardelang, Institut de Chimie Radicalaire (ICR), Aix Marseille Université (AMU)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Centre Interdisciplinaire de Nanoscience de Marseille (CINaM), Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), Soutien à la Recherche de l'Institut Européen de Chimie Biologique, Université Sciences et Technologies - Bordeaux 1 (UB)-Institut Européen de Chimie et de Biologie-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Chimie et Biologie des Membranes et des Nanoobjets (CBMN), and Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
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[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,Organic Chemistry ,[CHIM.CRIS]Chemical Sciences/Cristallography ,[CHIM.COOR]Chemical Sciences/Coordination chemistry ,General Chemistry ,Catalysis - Abstract
International audience; The structure of the Viologen-Phenylene-Imidazole (VPI) guest, previously shown to be bound by cucurbit[7]uril (CB[7]) with binding modes depending on pH and silver ions, has been extended by adding hydrophobic groups on the two extremities of VPI before investigations of CB[7] binding by NMR, ITC, X-ray diffraction, UV-vis and fluorescence spectroscopies. With an imidazole station extended by a naphthalene group (VPI-N), binding modes of CB[7] are similar to those previously observed. However, with the viologen extended by a tolyl group (T-VPI), CB[7] preferentially sits on station T, shuttling between the T and P stations at acid pH or after Ag + addition. The CB[7]•T-VPI complex thus behaves as a metal-actuated thermodynamic stop-and-go molecular shuttle featured by fast and autonomous ring translocation between two stations and a continuum for fractional station occupancy solely and easily controlled by Ag + concentration.
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- 2023
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4. [3]Foldarotaxane-mediated synthesis of an improbable [2]rotaxane
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Victor Koehler, Maxime Gauthier, Chenhao Yao, Karine Fournel-Marotte, Philip Waelès, Brice Kauffmann, Ivan Huc, Frédéric Coutrot, Yann Ferrand, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Institut des Biomolécules Max Mousseron [Pôle Chimie Balard] (IBMM), Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Ecole Nationale Supérieure de Chimie de Montpellier (ENSCM), Université de Montpellier (UM), Soutien à la Recherche de l'Institut Européen de Chimie Biologique, Université Sciences et Technologies - Bordeaux 1 (UB)-Institut Européen de Chimie et de Biologie-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Ludwig-Maximilians University [Munich] (LMU), and FERRAND, Yann
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[CHIM.INOR] Chemical Sciences/Inorganic chemistry ,Rotaxanes ,[CHIM] Chemical Sciences ,Materials Chemistry ,Metals and Alloys ,Ceramics and Composites ,[CHIM]Chemical Sciences ,General Chemistry ,[CHIM.INOR]Chemical Sciences/Inorganic chemistry ,Catalysis ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials - Abstract
The wrapping of an aromatic oligoamide helix around an active ester-containing [2]rotaxane enforced the sliding and the sequestration of the surrounding macrocycle around a part of the axle for which it has no formal affinity. The foldamer-mediated compartmentalization of the [2]rotaxane shuttle was subsequently used to prepare an improbable rotaxane.
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- 2022
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5. Accessing Improbable Foldamer Shapes with Strained Macrocycles
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Masatoshi Kawahata, Aya Tanatani, Vojislava Pophristic, Yann Ferrand, Kosuke Katagiri, Ko Urushibara, Ryan D'Elia, Ivan Huc, Zhiwei Liu, Estelle Morvan, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Ochanomizu University, Konan University [Kobe, Japan], Showa Pharmaceutical University, Institut Européen de Chimie et Biologie (IECB), and Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM)
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Models, Molecular ,Molecular Conformation ,Hot Paper ,Random hexamer ,Alkylation ,010402 general chemistry ,Crystallography, X-Ray ,01 natural sciences ,Catalysis ,Molecular dynamics ,chemistry.chemical_compound ,foldamer ,Amide ,cis amide ,Full Paper ,010405 organic chemistry ,fluxionality ,Organic Chemistry ,Foldamer ,General Chemistry ,Full Papers ,strained structures ,Amides ,0104 chemical sciences ,Folding (chemistry) ,Crystallography ,[CHIM.POLY]Chemical Sciences/Polymers ,Monomer ,chemistry ,Cyclization ,Helix ,macrocycle - Abstract
The alkylation of some secondary amide functions with a dimethoxybenzyl (DMB) group in oligomers of 8‐amino‐2‐quinolinecarboxylic acid destabilizes the otherwise favored helical conformations, and allows for cyclization to take place. A cyclic hexamer and a cyclic heptamer were produced in this manner. After DMB removal, X‐ray crystallography and NMR show that the macrocycles adopt strained conformations that would be improbable in noncyclic species. The high helix folding propensity of the main chain is partly expressed in these conformations, but it remains frustrated by macrocyclization. Despite being homomeric, the macrocycles possess inequivalent monomer units. Experimental and computational studies highlight specific fluxional pathways within these structures. Extensive simulated annealing molecular dynamics allow for the prediction of the conformations for larger macrocycles with up to sixteen monomers., Frustrating folding propensity by imposing a macrocyclic structure to an otherwise helical backbone produces improbable yet stable strained molecular shapes. Both experiments and computational studies show how aromatic oligoamide foldamers constrained within a macrocycle try to fulfill their strong propensity to adopt helical conformations by forming local loops and unfolded sites that connect helical segments. Defined fluxional conformational pathways can be evidenced in such molecules.
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- 2021
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6. Interplay between a Foldamer Helix and a Macrocycle in a Foldarotaxane Architecture
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Ivan Huc, Yann Ferrand, Maxime Gauthier, Frédéric Coutrot, Caroline Clavel, Brice Kauffmann, Victor Koehler, Institut des Biomolécules Max Mousseron [Pôle Chimie Balard] (IBMM), Ecole Nationale Supérieure de Chimie de Montpellier (ENSCM)-Institut de Chimie du CNRS (INC)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Institut Européen de Chimie et Biologie (IECB), and Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM)
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Steric effects ,Rotaxane ,Chemistry ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,010405 organic chemistry ,Supramolecular chemistry ,Foldamer ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,General Medicine ,010402 general chemistry ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Axle ,Crystallography ,Helix ,Molecular motion ,ComputingMilieux_MISCELLANEOUS - Abstract
The design and synthesis of a novel rotaxane/foldaxane hybrid architecture is reported. The winding of an aromatic oligoamide helix host around a dumbbell-shaped thread-like guest, or axle, already surrounded by a macrocycle was evidenced by NMR spectroscopy and X-ray crystallography. The process proved to depend on the position of the macrocycle along the axle and the associated steric hindrance. The macrocycle thus behaves as a switchable shield that modulates the affinity of the helix for the axle. Reciprocally, the foldamer helix acts as a supramolecular auxiliary that compartmentalizes the axle. In some cases, the macrocycle is forced to move along the axle to allow the foldamer to reach its best recognition site.
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- 2021
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7. Self-assembling figure-of-eight and pseudoplectoneme aromatic oligoamide ribbons
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Chenhao Yao, Brice Kauffmann, Ivan Huc, and Yann Ferrand
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Materials Chemistry ,Metals and Alloys ,Ceramics and Composites ,General Chemistry ,Amides ,Catalysis ,Protein Structure, Secondary ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials - Abstract
Two oligoamide macrocycles composed of eight and twelve 7-amino-8-fluoro-2-quinolinecarboxylic acid monomers were synthesised despite the propensity of their acyclic precursors to fold and self-assemble into double helices. Macrocyclisations were made possible through the transient use of helicity disruptors. The resulting macrocyclic ribbons were found to adopt figure-of-eight and pseudoplectoneme shapes that maintain an ability to self-assemble.
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- 2022
8. Selective and Cooperative Photocycloadditions within Multistranded Aromatic Sheets
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Bappaditya Gole, Brice Kauffmann, Arnaud Tron, Victor Maurizot, Nathan McClenaghan, Ivan Huc, Yann Ferrand, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Soutien à la Recherche de l'Institut Européen de Chimie Biologique, Université Sciences et Technologies - Bordeaux 1 (UB)-Institut Européen de Chimie et de Biologie-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Institut des Sciences Moléculaires (ISM), Université Montesquieu - Bordeaux 4-Université Sciences et Technologies - Bordeaux 1 (UB)-École Nationale Supérieure de Chimie et de Physique de Bordeaux (ENSCPB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Ludwig-Maximilians-Universität München (LMU), and Ferrand, Yann
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photochemistry ,Magnetic Resonance Spectroscopy ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,cooperativity ,structure elucidation ,Molecular Conformation ,General Chemistry ,[CHIM.ORGA] Chemical Sciences/Organic chemistry ,Biochemistry ,Amides ,Catalysis ,Foldamer ,aromatic sheet ,Colloid and Surface Chemistry ,X-ray crystallography - Abstract
International audience; A series of aromatic helix-sheet-helix oligoamide foldamers composed of several different photosensitive diazaanthracene units have been designed and synthesized. Molecular objects up to 7 kDa were straightforwardly produced on a 100 mg scale. NMR and crystallographic investigations revealed that helix-sheet-helix architectures can adopt one or two distinct conformations. Sequences composed of an even number of turn units were found to fold in a canonical symmetrical conformation with two helices of identical handedness stacked above and below the sheet segment. Sequences composed of an odd number of turns revealed a coexistence between a canonical fold with helices of opposite handedness, and an alternate fold with a twist within the sheet and two helices of identical handedness. The proportions between these species could be manipulated, in some cases quantitatively, being dependent on solvent, temperature and absolute control of helix handedness. Diazaanthracene units were shown to display distinct reactivity towards 4+4 photocycloadditions according to the substituent in the 9 position. Their organization within the sequences was programmed to allow photoreactions to take place in a specific order. Reaction pathways and kinetics were deciphered and products characterized, demonstrating the possibility to orchestrate successive photoreactions so as to avoid orphan units, or to deliberately produce orphan units at precise locations. Strong cooperative effects were observed in which the photoreaction rate was influenced by the presence (or absence) of photoadducts in the structure. Multiple photoreactions within the aromatic sheet eventually lead to the structure lengthening and stiffening, locking conformational equilibria. Photoproducts could be thermally reverted.
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- 2022
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9. Allosteric Recognition of Homomeric and Heteromeric Pairs of Monosaccharides by a Foldamer Capsule
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Brice Kauffmann, Cameron D. Mackereth, Yann Ferrand, Pedro Mateus, Ivan Huc, Nagula Chandramouli, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), and École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS)
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Circular dichroism ,Stereochemistry ,Allosteric regulation ,carbohydrates ,helical capsule ,010402 general chemistry ,01 natural sciences ,Catalysis ,Molecular recognition ,foldamer ,Molecule ,Homomeric ,[CHIM]Chemical Sciences ,foldamers ,arabinose ,Research Articles ,X-ray crystallography ,allostery ,Chemistry ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,010405 organic chemistry ,Foldamer ,xylose ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,General Medicine ,helical capsules ,Tautomer ,NMR ,circular dichroism ,0104 chemical sciences ,3. Good health ,Molecular Recognition ,Research Article - Abstract
The recognition of either homomeric or heteromeric pairs of pentoses in an aromatic oligoamide double helical foldamer capsule was evidenced by circular dichroism (CD), NMR spectroscopy, and X‐ray crystallography. The cavity of the host was predicted to be large enough to accommodate simultaneously two xylose molecules and to form a 1:2 complex (one container, two saccharides). Solution and solid‐state data revealed the selective recognition of the α‐4C1‐d‐xylopyranose tautomer, which is bound at two identical sites in the foldamer cavity. A step further was achieved by sequestering a heteromeric pair of pentoses, that is, one molecule of α‐4C1‐d‐xylopyranose and one molecule of β‐1C4‐d‐arabinopyranose despite the symmetrical nature of the host and despite the similarity of the guests. Subtle induced‐fit and allosteric effects are responsible for the outstanding selectivities observed., Two monosacharides fit in an aromatic double helical foldamer container. Binding is shown to be selective in terms of the sugar anomer, pyranose/furanose tautomer, and helix handedness, and leads to well defined homomeric or heteromeric complexes. One heteromeric complex selectively forms out of 42 different possibilities.
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- 2020
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10. Aromatic foldamers as scaffolds for metal second coordination sphere design
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Michael L. Singleton, Ivan Huc, Brice Kauffmann, Antoine Meunier, Yann Ferrand, Thierry Granier, Guillaume Lautrette, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Imagerie Moléculaire et Nanobiotechnologies - Institut Européen de Chimie et Biologie (IECB), Université Sciences et Technologies - Bordeaux 1-Centre National de la Recherche Scientifique (CNRS), Ludwig-Maximilians-Universität München (LMU), and UCL - SST/IMCN/MOST - Molecular Chemistry, Materials and Catalysis
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Modularity (networks) ,Materials science ,Coordination sphere ,010405 organic chemistry ,business.industry ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,Foldamer ,Infrared spectroscopy ,Nanotechnology ,General Chemistry ,Modular design ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,3. Good health ,Metal ,chemistry.chemical_compound ,Chemistry ,Monomer ,chemistry ,visual_art ,Cluster (physics) ,visual_art.visual_art_medium ,[CHIM.COOR]Chemical Sciences/Coordination chemistry ,business - Abstract
As metalloproteins exemplify, the chemical and physical properties of metal centers depend not only on their first but also on their second coordination sphere. Installing arrays of functional groups around the first coordination sphere of synthetic metal complexes is thus highly desirable, but it remains a challenging objective. Here we introduce a novel approach to produce tailored second coordination spheres. We used bioinspired artificial architectures based on aromatic oligoamide foldamers to construct a rigid, modular and well-defined environment around a metal complex. Specifically, aza-aromatic monomers having a tethered [2Fe–2S] cluster have been synthesized and incorporated in conical helical foldamer sequences. Exploiting the modularity and predictability of aromatic oligoamide structures allowed for the straightforward design of a conical architecture able to sequester the metal complex in a confined environment. Even though no direct metal complex–foldamer interactions were purposely designed in this first generation model, crystallography, NMR and IR spectroscopy concurred to show that the aromatic oligoamide backbone alters the structure and fluxional processes of the metal cluster., Wrapping a [2Fe–2S] metal complex in an aromatic foldamer helix is introduced as a new approach to tailor a second coordination sphere.
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- 2021
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11. Inside Cover: Interplay between a Foldamer Helix and a Macrocycle in a Foldarotaxane Architecture (Angew. Chem. Int. Ed. 15/2021)
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Victor Koehler, Caroline Clavel, Brice Kauffmann, Ivan Huc, Frédéric Coutrot, Maxime Gauthier, Yann Ferrand, Institut des Biomolécules Max Mousseron [Pôle Chimie Balard] (IBMM), Ecole Nationale Supérieure de Chimie de Montpellier (ENSCM)-Institut de Chimie du CNRS (INC)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Institut Européen de Chimie et Biologie (IECB), Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM), Coutrot, Frédéric, and Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
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Physics ,Crystallography ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,Helix ,Molecular motion ,Foldamer ,Cover (algebra) ,General Chemistry ,[CHIM.ORGA] Chemical Sciences/Organic chemistry ,Catalysis ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
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- 2021
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12. Influence of Positional Isomerism on the Chiroptical Properties of Functional Aromatic Oligoamide Foldamers
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Thierry Buffeteau, Céline Olivier, Nathan D. McClenaghan, Eric Merlet, Kevin Moreno, Yann Ferrand, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Institut des Sciences Moléculaires (ISM), and Université Montesquieu - Bordeaux 4-Université Sciences et Technologies - Bordeaux 1-École Nationale Supérieure de Chimie et de Physique de Bordeaux (ENSCPB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
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Fluorophore ,010405 organic chemistry ,Quinoline ,Substituent ,circularly polarized luminescence ,General Chemistry ,Hardware_PERFORMANCEANDRELIABILITY ,[CHIM.MATE]Chemical Sciences/Material chemistry ,010402 general chemistry ,vibrational circular dichroism ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,Crystallography ,oligoamides ,Enantiopure drug ,chemistry ,Vibrational circular dichroism ,Hardware_INTEGRATEDCIRCUITS ,[CHIM]Chemical Sciences ,foldamers ,Enantiomer ,Chirality (chemistry) ,Luminescence ,positional isomerism - Abstract
A series of functionalized quinoline-based aromatic oligoamide foldamers were prepared in their two enantiomeric forms, comprising an enantiopure terminal camphanyl chiral inducer, which governed the adjacent (P-/M-) helical-handedness. Hierarchical chirality transfer was further investigated in chromophore-appended variants via a range of electronic and vibrational spectroscopic techniques, including circularly polarized luminescence, vibrational circular dichroism and fluorescence. Intense total and polarized photoluminescence (up to phi(lum)=0.39, g(lum)=1.5x10(-3)) was observed in the visible region from these modular multicomponent architectures and a significant influence of positional isomerism was evidenced. The optimal position of a fluorophore substituent on the quinoline hexamers was determined as being position 2 over position 6, as stronger chiroptical features were systematically observed with the 2-positioned derivatives.
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- 2021
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13. Sensing a binding event through charge transport variations using an aromatic oligoamide capsule
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Gilles Pecastaings, Alejandro Méndez-Ardoy, Alice Boulloy, Brice Kauffmann, Ivan Huc, Thierry Buffeteau, Dario M. Bassani, Yann Ferrand, Antoine Jacquet, Pedro Mateus, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Institut des Sciences Moléculaires (ISM), Université Montesquieu - Bordeaux 4-Université Sciences et Technologies - Bordeaux 1-École Nationale Supérieure de Chimie et de Physique de Bordeaux (ENSCPB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Institut Européen de Chimie et Biologie (IECB), Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Chimie des Polymères Organiques (LCPO), Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Ecole Nationale Supérieure de Chimie, de Biologie et de Physique (ENSCBP)-Institut Polytechnique de Bordeaux-Institut de Chimie du CNRS (INC), ANR-19-CE18-0018,SERO6Pain,Les voies de signalisation du récepteur 5-HT6: de nouvelles cibles pour le traitement de la douleur neuropathique?(2019), European Project: 707071,H2020,H2020-MSCA-IF-2015,RAMSES(2016), École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM), Centre National de la Recherche Scientifique (CNRS)-Institut Polytechnique de Bordeaux-Ecole Nationale Supérieure de Chimie, de Biologie et de Physique (ENSCBP)-Université de Bordeaux (UB)-Institut de Chimie du CNRS (INC), Team 4 LCPO : Polymer Materials for Electronic, Energy, Information and Communication Technologies, Centre National de la Recherche Scientifique (CNRS)-Institut Polytechnique de Bordeaux-Ecole Nationale Supérieure de Chimie, de Biologie et de Physique (ENSCBP)-Université de Bordeaux (UB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Institut Polytechnique de Bordeaux-Ecole Nationale Supérieure de Chimie, de Biologie et de Physique (ENSCBP)-Université de Bordeaux (UB)-Institut de Chimie du CNRS (INC), Ludwig-Maximilians-Universität München (LMU), Université Montesquieu - Bordeaux 4-Université Sciences et Technologies - Bordeaux 1 (UB)-École Nationale Supérieure de Chimie et de Physique de Bordeaux (ENSCPB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Université de Bordeaux (UB)-Ecole Nationale Supérieure de Chimie, de Biologie et de Physique (ENSCBP)-Institut Polytechnique de Bordeaux-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Université de Bordeaux (UB)-Ecole Nationale Supérieure de Chimie, de Biologie et de Physique (ENSCBP)-Institut Polytechnique de Bordeaux-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Ecole Nationale Supérieure de Chimie, de Biologie et de Physique (ENSCBP)-Institut Polytechnique de Bordeaux-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Admin, Oskar, Les voies de signalisation du récepteur 5-HT6: de nouvelles cibles pour le traitement de la douleur neuropathique? - - SERO6Pain2019 - ANR-19-CE18-0018 - AAPG2019 - VALID, and Aryl amide metallofoldamersas selective saccharide sensors - RAMSES - - H20202016-03-01 - 2018-02-28 - 707071 - VALID
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chemistry.chemical_classification ,[CHIM.MATE] Chemical Sciences/Material chemistry ,010405 organic chemistry ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,Carboxylic acid ,Foldamer ,Protonation ,General Chemistry ,[CHIM.MATE]Chemical Sciences/Material chemistry ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Crystallography ,chemistry.chemical_compound ,Chemistry ,Dicarboxylic acid ,Deprotonation ,chemistry ,Monolayer ,Tartaric acid ,Molecule - Abstract
The selective binding properties of a 13-mer oligoamide foldamer capsule composed of 4 different aromatic subunits are reported. The capsule was designed to recognize dicarboxylic acids through multiple-point interactions owing to a combination of protonation/deprotonation events, H-bonding, and geometrical constraints imparted by the rigidity of the foldamer backbone. Compared to tartaric acid, binding of 2,2-difluorosuccinic acid or 2,2,3,3-tetrafluorosuccinic acid resulted in symmetry breaking due to deprotonation of only one of the two carboxylic acid groups of the encapsulated species as shown by NMR studies in solution and by single-crystal X-ray diffraction in the solid state. An analogous 14-mer foldamer capsule terminated with a thiol anchoring group was used to probe the complexation event in self-assembled monolayers on Au substrates. Ellipsometry and polarization-modulation infrared absorption-reflection spectroscopy studies were consistent with the formation of a single molecule layer of the foldamer capsule oriented vertically with respect to the surface. The latter underwent smooth complexation of 2,2-difluorosuccinic acid with deprotonation of one of the two carboxylic acid groups. A significant (80-fold) difference in the charge transport properties of the monolayer upon encapsulation of the dicarboxylic acid was evidenced from conducting-AFM measurements (S = 1.1 × 10−9vs. 1.4 × 10−11 ohm−1 for the empty and complexed capsule, respectively). The modulation in conductivity was assigned to protonation of the aromatic foldamer backbone., Conductance through a monolayer of a helical foldamer host was found to vary by 80-fold depending on the presence or the absence of a guest in the host's cavity.
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- 2021
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14. Light-mediated chiroptical switching of an achiral foldamer host in presence of a carbohydrate guest
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Stefan Hecht, Ivan Huc, Susnata Pramanik, Brice Kauffmann, Yann Ferrand, FERRAND, Yann, Ludwig-Maximilians-Universität München (LMU), Soutien à la Recherche de l'Institut Européen de Chimie Biologique, Université Sciences et Technologies - Bordeaux 1 (UB)-Institut Européen de Chimie et de Biologie-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Humboldt University Of Berlin, Rheinisch-Westfälische Technische Hochschule Aachen University (RWTH), Chimie et Biologie des Membranes et des Nanoobjets (CBMN), Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut Européen de Chimie et de Biologie-Université Sciences et Technologies - Bordeaux 1-Institut de Chimie du CNRS (INC), Humboldt-Universität zu Berlin, Rheinisch-Westfälische Technische Hochschule Aachen (RWTH), and École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS)
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010405 organic chemistry ,Chemistry ,Stereochemistry ,Metals and Alloys ,Foldamer ,General Chemistry ,Carbohydrate ,010402 general chemistry ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,chemistry.chemical_compound ,[CHIM.THEO] Chemical Sciences/Theoretical and/or physical chemistry ,Diarylethene ,Materials Chemistry ,Ceramics and Composites - Abstract
International audience; A photoresponsive diarylethene was incorporated in an achiral helical foldamer container. A carbohydrate guest was found to induce opposite handedness upon binding to the open and closed forms of the diarylethene-containing foldamer, thus enabling chiroptical switching of an achiral host mediated by a chiral guest.
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- 2021
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15. Selective Encapsulation of Disaccharide Xylobiose by an Aromatic Foldamer Helical Capsule
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Yann Ferrand, Brice Kauffmann, Subrata Saha, Ivan Huc, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Institut Européen de Chimie et Biologie (IECB), and Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM)
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Circular dichroism ,Anomer ,010405 organic chemistry ,Chemistry ,Hydrogen bond ,carbohydrates ,Disaccharide ,Foldamer ,[CHIM.MATE]Chemical Sciences/Material chemistry ,General Medicine ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,helical capsules ,010402 general chemistry ,disaccharides ,01 natural sciences ,Catalysis ,0104 chemical sciences ,chemistry.chemical_compound ,Crystallography ,Molecular recognition ,Xylobiose ,foldamers ,molecular recognition - Abstract
Xylobiose sequestration in a helical aromatic oligoamide capsule was evidenced by circular dichroism, NMR spectroscopy, and crystallography. The preparation of the 5 kDa oligoamide sequence was made possible by the transient use of acid-labile dimethoxybenzyl tertiary amide substituents that disrupt helical folding and prevent double helix formation. Binding of other disaccharides was not detected. Crystallographic data revealed a complex composed of a d-xylobiose alpha anomer and two water molecules accommodated in the right-handed helix. The disaccharide was found to adopt an unusual all-axial compact conformation. A dense network of 18 hydrogen bonds forms between the guest, the cavity wall, and the two water molecules.
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- 2018
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16. Hyper-Rayleigh Scattering as a New Chiroptical Method: Uncovering the Nonlinear Optical Activity of Aromatic Oligoamide Foldamers
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Dominique Verreault, Vincent Rodriguez, Brice Kauffmann, Yann Ferrand, Frédéric Adamietz, Kevin Moreno, Eric Merlet, Céline Olivier, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), and École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS)
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010405 organic chemistry ,Scattering ,Linear polarization ,Chemistry ,Supramolecular chemistry ,General Chemistry ,010402 general chemistry ,Polarization (waves) ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,symbols.namesake ,Colloid and Surface Chemistry ,Chiral model ,Chemical physics ,Helix ,symbols ,[CHIM]Chemical Sciences ,Enantiomer ,Rayleigh scattering - Abstract
Molecular helices based on self-organized aromatic oligoamide foldamers have been designed and prepared in their two enantiomeric forms in order to probe their second-order nonlinear chiroptical properties in solution. The quinoline oligoamides were rationally functionalized by electron-donating and electron-withdrawing groups to afford a gradual increase of the electronic polarization of the helical architectures. Their hyper-Rayleigh scattering (HRS) responses in solution were accordingly assessed, using either linearly polarized or circularly polarized incident light. Both methods allowed us to observe nonlinear optical activity that was quantified, for the first time for molecular systems, through circular differential scattering intensity ratios. The hyper-Rayleigh optical activity study reveals important charge-transfer differences within the aromatic oligomers, depending on the helix handedness and on the extent of electronic polarization induced by the appended substituents. The origin of the enantiomeric difference is discussed considering both achiral and chiral contributions. Overall, using aromatic oligoamide foldamers as a chiral model, we demonstrate the capabilities of HRS as a complementary chiroptical method, ideally suited for the analysis of various chiral molecular and supramolecular systems in solution. The reliability and chiral discrimination sensitivity of the method can be further improved through dynamic measurements using standard polarization modulation and heterodyning techniques.
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- 2019
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17. Designing Helical Molecular Capsules Based on Folded Aromatic Amide Oligomers
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Yann Ferrand and Ivan Huc
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Molecular Structure ,010405 organic chemistry ,Chemistry ,Ab initio ,Supramolecular chemistry ,Foldamer ,Capsules ,macromolecular substances ,General Medicine ,General Chemistry ,010402 general chemistry ,Amides ,01 natural sciences ,Combinatorial chemistry ,0104 chemical sciences ,chemistry.chemical_compound ,Monomer ,Molecular recognition ,Amide ,Diamine ,Quantum Theory ,Molecule - Abstract
The ab initio rational structure-based design of a synthetic molecular receptor for a given complex biomolecular guest remains an elusive objective, yet remarkable progress has been achieved in recent years. This Account deals with the use of folded artificial aromatic amide oligomers, also termed aromatic foldamers, inspired from biopolymer structures, for the design of helical molecular capsules that can recognize guest molecules, completely surround them, and isolate them from the solvent, thus giving rise to a sort of guest encapsulation associated with slow binding and release kinetics. The development of new amino acid, diacid, and diamine monomers, a main source of creativity in this field, progress in their assembly into ever longer oligoamide sequences, and the predictability of the folded structures due to their inherent rigidity and simple folding principles, allowed for the design and preparation of unimolecular and bimolecular capsule shapes. These capsules consist of molecular helices having a large diameter in the middle and a narrow diameter at both ends thus creating a cavity suitable for binding a guest molecule. The understanding of molecular recognition properties within these bioinspired containers has greatly progressed. Recognition of simple guests such as diols or amino-alcohols may thus be predicted, and hosts can be proposed for guests as complex as saccharides using first principle design. Taking advantage of the modular nature of oligomeric sequences, of their synthetic accessibility and of their propensity to grow into crystals suitable for X-ray crystallographic analysis, a structure-based iterative design methodology has been developed that eventually yielded exquisite guest selectivity, affinity, and diastereoselectivity. This methodology involves rational negative design steps during which changes in the foldamer capsule sequence are not intended to improve binding to the targeted guest but instead to exclude the binding of other guests while preserving key interactions with the target. Metal ions can also be introduced at the inner rim of foldamer capsules and eventually assist the binding of an organic guest. These results demonstrate the viability of an ab initio approach to abiotic receptor design based on aromatic foldamers. The dynamic of the capsules associated with their self-organized nature provides opportunities to not only tune guest binding and selectivity, but also guest capture and release kinetics as well as cavity size and shape. Controlled release thus emerges as a realistic objective. Recent progress thus opens up multiple perspectives for the development of tailored hosts, sensors, and carriers structurally and conceptually different from earlier generations of macrocyclic-based receptors or from supramolecular containers produced by self-assembly.
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- 2018
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18. Controlling Dipole Orientation through Curvature: Aromatic Foldamer Bent β-Sheets and Helix–Sheet–Helix Architectures
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Laure Sebaoun, Barbara Wicher, Yann Ferrand, Arthur Lamouroux, Victor Maurizot, Brice Kauffmann, Ivan Huc, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Institut Européen de Chimie et Biologie (IECB), Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), and Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM)
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[CHIM.ORGA]Chemical Sciences/Organic chemistry ,010405 organic chemistry ,Chemistry ,Aryl ,Bent molecular geometry ,Foldamer ,General Chemistry ,010402 general chemistry ,Curvature ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Turn (biochemistry) ,Folding (chemistry) ,Crystallography ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Intramolecular force ,Helix - Abstract
International audience; The helix, turn and beta-strand motifs of biopolymer folded structures have been found to prevail also in non-natural backbones. In contrast, foldamers with aryl rings in their main chains possess distinct conformations that may give access to folded objects beyond the reach of peptidic and nucleotidic backbones. In search for such original architectures we have explored the effect of bending aromatic amide beta-sheets using building blocks that impart curvature. Cyclic and multi-turn noncyclic sequences were synthesized and their structures were characterized in solution and in the solid state. Stable bent-sheet conformations were shown to prevail in chlorinated solvents. In these structures, folding overcomes intramolecular electrostatic repulsions and forces local dipoles in each layer of the stacked strands to align in a parallel fashion. Sequences having helical segments flanking a central bent aromatic beta-sheet were then synthesized and shown to form well-defined helix-turn-helix architectures in which helical and sheet sub-components conserve their respective integrity. These objects have a unique basket shape; they possess a cavity the depth and width of which reflects the curvature of the beta-sheet segment. They can be compared to previously described helical closed-shell receptors in which a window has been open thus providing a means to control guest binding and release pathways and kinetics. As a proof of concept, guest binding to one of the helix-sheet-helix structure is indeed found to be fast on the NMR time scale while it is generally slow in the case of helical capsules.
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- 2017
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19. Aromatic oligoamide foldamers as versatile scaffolds for induced circularly polarized luminescence at adjustable wavelengths
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Arnaud Tron, Nathan D. McClenaghan, Yann Ferrand, Céline Olivier, Eric Merlet, Brice Kauffmann, Kevin Moreno, Institut des Sciences Moléculaires (ISM), Université Montesquieu - Bordeaux 4-Université Sciences et Technologies - Bordeaux 1-École Nationale Supérieure de Chimie et de Physique de Bordeaux (ENSCPB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Institut Européen de Chimie et Biologie (IECB), Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM), Chimie et Biologie des Membranes et des Nanoobjets (CBMN), and École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS)
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Materials science ,010405 organic chemistry ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,Quinoline ,Metals and Alloys ,General Chemistry ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Wavelength ,chemistry.chemical_compound ,chemistry ,Materials Chemistry ,Ceramics and Composites ,Visible range ,[CHIM]Chemical Sciences ,Luminescence - Abstract
International audience; Quinoline oligoamide foldamers appended with non-chiral fluorophores and derivatized with a camphanyl chiral inducer display strong chiroptical properties at tunable wavelengths as proved by CD and CPL spectroscopies. Induced CPL activity with high luminescence dissymmetry factors was observed in the visible range at wavelengths specific to the fluorophores.
- Published
- 2019
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20. Light-Controlled Conformational Switch of an Aromatic Oligoamide Foldamer
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Brice Kauffmann, Ivan Huc, Yann Ferrand, Victor Maurizot, Bappaditya Gole, Institut Européen de Chimie et Biologie (IECB), Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM), Chimie et Biologie des Membranes et des Nanoobjets (CBMN), École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Institut Européen de Chimie et Biologie, and Institut Européen de Chimie et de Biologie
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Molekulare Schalter ,Oligomere ,Sequence (biology) ,010402 general chemistry ,01 natural sciences ,Catalysis ,Light responsive ,[CHIM.CRIS]Chemical Sciences/Cristallography ,[CHIM]Chemical Sciences ,Foldamere ,Conformational isomerism ,Röntgenkristallographie ,Molecular switch ,Chemistry ,010405 organic chemistry ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,Foldamer ,General Chemistry ,[CHIM.MATE]Chemical Sciences/Material chemistry ,General Medicine ,Cycloaddition ,0104 chemical sciences ,Crystallography ,Helix ,X-ray crystallography ,Photochemie - Abstract
International audience; We have investigated the conformation control of a foldamer switch by light. An aromatic oligoamide sequence composed of a light responsive diazaanthracene-based aromatic -sheet flanked by two variable diameter helical segments was prepared. Structural investigations revealed that such oligomers adopt two distinct conformations: a canonical symmetrical conformation with the two helices stacked above and below the sheet, and an unanticipated unsymmetrical conformation in which one helix has flipped to directly stack with the first helix. Photo-irradiation of the foldamer led to the quantitative, and thermally reversible, formation of a single photo-product resulting from the [4+4] cycloaddition of two diazaanthracenes within the aromatic -sheet. NMR and crystallographic studies revealed a parallel (i.e. head-to-head) arrangement of the diazaanthracene photoproduct and a complete conversion to a symmetrical conformation requiring a rearrangement of all unsymmetrical conformers. These results highlight the potential of foldamers with structures more complex that isolated helices for the design of photo-switches showing nontrivial nanometer scale shape changes.
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- 2019
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21. Directional Threading and Sliding of a Dissymmetrical Foldamer Helix on Dissymmetrical Axles
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Xiang Wang, Ivan Huc, Barbara Wicher, Quan Gan, Yann Ferrand, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Poznan University of Medical Sciences [Poland] (PUMS), Center for Integrated Protein Science (CIPSM), Technische Universität Munchen - Université Technique de Munich [Munich, Allemagne] (TUM)-Helmholtz-Zentrum München (HZM)-Ludwig Maximilian University of Munich [Germany] (LMU München), and Université Sciences et Technologies - Bordeaux 1-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Centre National de la Recherche Scientifique (CNRS)
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Materials science ,010405 organic chemistry ,Supramolecular chemistry ,Foldamer ,molecular shuttle ,General Medicine ,General Chemistry ,[CHIM.MATE]Chemical Sciences/Material chemistry ,[CHIM.INOR]Chemical Sciences/Inorganic chemistry ,010402 general chemistry ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Crystallography ,Molecular recognition ,Wrap around ,Proton NMR ,Molecule ,[CHIM]Chemical Sciences ,foldaxane ,Dumbbell ,molecular recognition ,Threading (protein sequence) ,directional motion - Abstract
International audience; We have investigated the self-assembly of a dissymmetrical aromatic oligoamide helix on linear amido-carbamate rods. A dissymmetric sequence bearing two differentiated ends is able to wrap around dissymmetric dumbbell guest molecules. Structural and thermodynamic investigations allowed us to decipher the mode of binding of the helix that can bind specifically to the amide and carbamate groups of the rod. In parallel kinetic studies of threading and sliding of the helix along linear axles were also monitored by 1 H NMR. Results show that threading of a dissymmetrical host can be kinetically biased by the nature of the guest terminus allowing a preferential sense of sliding of the helix. The study presented below further demonstrates the valuable potential of foldaxanes to combine designed molecular recognition patterns with fine control of self-assembly kinetics to conceive complex supramolecular events.
- Published
- 2019
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22. Carbohydrate binding through first- and second-sphere coordination within aromatic oligoamide metallofoldamers
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Ivan Huc, Pedro Mateus, Barbara Wicher, Yann Ferrand, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), and Ludwig-Maximilians-Universität München (LMU)
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010405 organic chemistry ,Metal binding ,Chemistry ,Metal ions in aqueous solution ,Metals and Alloys ,Crystallographic data ,General Chemistry ,macromolecular substances ,Carbohydrate ,010402 general chemistry ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Crystallography ,Materials Chemistry ,Ceramics and Composites ,Titration ,[CHIM.COOR]Chemical Sciences/Coordination chemistry - Abstract
International audience; Aromatic oligoamide capsules that fold upon metal binding recognize carbohydrate guests in solution as evidenced by CD and NMR titrations. Crystallographic data reveals that, besides their structural role, metal ions also contribute to guest recognition through either first-or second-sphere coordination.
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- 2018
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23. Angew.Chem.Int
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Hyuma Masu, Ivan Huc, Ko Urushibara, Aya Tanatani, Vojislava Pophristic, Yann Ferrand, Zhiwei Liu, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), and École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS)
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010405 organic chemistry ,Chemistry ,Degenerate energy levels ,General Chemistry ,[CHIM.MATE]Chemical Sciences/Material chemistry ,010402 general chemistry ,01 natural sciences ,Helicity ,Catalysis ,0104 chemical sciences ,3. Good health ,Crystallography ,chemistry.chemical_compound ,Amide ,Helix ,Peptide bond - Abstract
Macrocyclization of a stable two-turn helical aromatic pentamide, that is, an object with diverging ends that are not prone to cyclization, was made possible by the transient introduction of disruptors of helicity in the form of acid-labile dimethoxybenzyl tertiary amide substituents. After removal of the helicity disruptors, NMR, X-ray crystallography, and computational studies show that the macrocycle possesses a strained structure that tries to gain as high a helical content as possible despite being cyclic. Two points of disruption of helicity remain, in particular a cis amide bond. This point of disruption of helicity can propagate along the cycle in a fluxional manner according to defined trajectories to produce ten degenerate conformations.
- Published
- 2018
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24. Metal-Coordination-Assisted Folding and Guest Binding in Helical Aromatic Oligoamide Molecular Capsules
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Barbara Wicher, Guillaume Lautrette, Virginie Blot, Jacques Lebreton, Muriel Pipelier, Ivan Huc, Didier Dubreuil, Maxime Horeau, Yann Ferrand, Chimie Et Interdisciplinarité : Synthèse, Analyse, Modélisation (CEISAM), Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), Université de Nantes (UN)-Université de Nantes (UN)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC), Chimie et Biologie des Membranes et des Nanoobjets (CBMN), École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), and Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
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Coordination sphere ,Metal ions in aqueous solution ,Sequence (biology) ,010402 general chemistry ,01 natural sciences ,Catalysis ,Metal ,chemistry.chemical_compound ,Metallkoordination ,Polymer chemistry ,[CHIM]Chemical Sciences ,Foldamere ,Molekulare Erkennung ,Helikale Konformationen ,010405 organic chemistry ,Foldamer ,General Medicine ,General Chemistry ,Wirt-Gast-Chemie ,0104 chemical sciences ,Folding (chemistry) ,Monomer ,chemistry ,visual_art ,Helix ,visual_art.visual_art_medium - Abstract
International audience; The development of foldamer-based receptors is driven by the design of monomers with specific properties. Herein, we introduce a pyridazine-pyridine-pyridazine diacid monomer and its incorporation into helical aromatic oligoamide foldamer containers. This monomer codes for a wide helix diameter and can sequester metal ions on the inner wall of the helix cavity. Crystallographic studies and NMR titrations show that part of the metal coordination sphere remains available and may then promote the binding of a guest within the cavity. In addition to metal coordination, binding of the guest is assisted by cooperative interactions with the helix host, thereby resulting in significant enhancements depending on the foldamer sequence, and in slow guest capture and release on the NMR time scale. In the absence of metal ions, the pyridazine-pyridine-pyridazine monomer promotes an extended conformation of the foldamer that results in aggregation, including the formation of an intertwined duplex
- Published
- 2017
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25. Orchestrating Directional Molecular Motions: Kinetically Controlled Supramolecular Pathways of a Helical Host on Rodlike Guests
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Ivan Huc, Barbara Wicher, Yann Ferrand, Xiang Wang, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), and Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
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double helix ,Stereochemistry ,Supramolecular chemistry ,molecular shuttle ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,Dissociation (chemistry) ,supramolecular pathways ,pseudo-rotaxane ,Colloid and Surface Chemistry ,foldamer ,Molecular motion ,[CHIM]Chemical Sciences ,foldaxane ,directional motion ,Alkyl ,Stable state ,chemistry.chemical_classification ,010405 organic chemistry ,Chemistry ,General Chemistry ,dynamic self-assembly ,Affinities ,0104 chemical sciences ,Crystallography ,Proton NMR ,molecular recognition - Abstract
International audience; An aromatic oligoamide sequence was designed to fold and self-assemble into a double helical host having a cylindrical cavity complementary to linear oligo–carbamates guests. Formation of helical pseudo–rotaxane complexes – foldaxanes – between the host and guests having binding stations of different affinities was evidenced by NMR and x-ray crystallography. Rod-like guests possessing two or three binding stations, long alkyl or oligoethylene glycol spacers or bulky barriers in-between the binding stations, and a single bulky stopper at one end, were synthesized. Kinetic investigations of the threading and translation of the double helix along multistation rods were monitored by 1 H NMR. Results show that multiple events may occur upon sliding of the host from the non-bulky end of the rod to reach the thermodynamically most stable state before unfolding-mediated dissociation has time to take place, including binding on intermediate stations and rapid sliding along non-binding spacers. Conversely, installing a kinetic barrier that blocks sliding allows for the deliberate integration of a helix dissociation re-association step in the supramolecular trajectory. Typical sliding processes can be monitored over the course of hours whereas steps involving unwinding/rewinding of the helix proceeded over the course of days. These results further demonstrate the interest of foldaxanes to design complex sequences of supramolecular events within networks of equilibria through the adjustment of the kinetics of the individual steps involved.
- Published
- 2017
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26. Alkali and alkaline earth metal ion binding by a foldamer capsule: selective recognition of magnesium hydrate
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Pedro Mateus, Barbara Wicher, Yann Ferrand, Ivan Huc, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), and École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS)
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Alkaline earth metal ,010405 organic chemistry ,Chemistry ,Inorganic chemistry ,Metals and Alloys ,Foldamer ,Capsule ,General Chemistry ,010402 general chemistry ,Alkali metal ,01 natural sciences ,Catalysis ,0104 chemical sciences ,3. Good health ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Metal ,Folding (chemistry) ,Ion binding ,visual_art ,Materials Chemistry ,Ceramics and Composites ,visual_art.visual_art_medium ,[CHIM.COOR]Chemical Sciences/Coordination chemistry ,Titration - Abstract
International audience; Alkali and alkaline earth metal ion binding by an aromatic oligoamide foldamer was shown to induce its folding into a helical capsule. CD and NMR titrations revealed tight and selective binding of Mg 2+. Crystallographic studies demonstrated that, depending on the metal, binding may involve the first or second coordination spheres of the metal hydrates.
- Published
- 2017
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27. Increasing the Size of an Aromatic Helical Foldamer Cavity by Strand Intercalation
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Ivan Huc, Michael L. Singleton, Yann Ferrand, Brice Kauffmann, and Geert Pirotte
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Models, Molecular ,Crystallography ,Chemistry ,Stereochemistry ,Macromolecular Substances ,Intercalation (chemistry) ,Supramolecular chemistry ,Foldamer ,Molecular Conformation ,Sequence (biology) ,Hydrogen Bonding ,General Chemistry ,General Medicine ,Catalysis ,Intercalating Agents ,chemistry.chemical_compound ,Monomer ,Helix ,Alpha helix - Abstract
The postsynthetic modulation of capsules based on helical aromatic oligoamide foldamers would be a powerful approach for controlling their receptor properties without altering the initial monomer sequences. With the goal of developing a method to increase the size of a cavity within a helix, a single-helical foldamer capsule was synthesized with a wide-diameter central segment that was designed to intercalate with a second shorter helical strand. Despite the formation of stable double-helical homodimers (K(dim)10(7) M(-1)) by the shorter strand, when it was mixed with the single-helical capsule sequence, a cross-hybridized double helix was formed with K(a)10(5) M(-1). This strategy makes it possible to direct the formation of double-helical heterodimers. On the basis of solution- and solid-state structural data, this intercalation resulted in an increase in the central-cavity size to give a new interior volume of approximately 150 Å(3).
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- 2014
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28. Citric acid encapsulation by a double helical foldamer in competitive solvents
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Ivan Huc, Yann Ferrand, Nagula Chandramouli, and Brice Kauffmann
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010405 organic chemistry ,Stereochemistry ,Functional features ,Metals and Alloys ,Foldamer ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,chemistry.chemical_compound ,chemistry ,Polymer chemistry ,Materials Chemistry ,Ceramics and Composites ,Aromatic amino acids ,Citric acid - Abstract
A new double helical aromatic oligoamide capsule able to bind to citric acid in polar and protic solvents was prepared. Aromatic amino acids in the sequence encode both structural (strand curvature and double helix formation) and functional features (recognition pattern) of the assembled capsule.
- Published
- 2016
29. Crystal structure of a complex between β-glucopyranose and a macrocyclic receptor with dendritic multicharged water solubilizing chains
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Yann Ferrand, Anthony P. Davis, Harry Destecroix, Ivan Huc, Brice Kauffmann, Pradeep K. Mandal, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), School of Chemistry [Bristol], and University of Bristol [Bristol]
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Macrocyclic Compounds ,Racemic crystallography ,Crystal structure ,Crystallography, X-Ray ,010402 general chemistry ,01 natural sciences ,Catalysis ,law.invention ,law ,Materials Chemistry ,[CHIM.CRIS]Chemical Sciences/Cristallography ,Monosaccharide ,Molecule ,Crystallization ,Solubility ,chemistry.chemical_classification ,Molecular Structure ,010405 organic chemistry ,Biomolecule ,Monosaccharides ,Resolution (electron density) ,Metals and Alloys ,Water ,General Chemistry ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Crystallography ,chemistry ,Ceramics and Composites - Abstract
International audience; Using commercial screens for crystallization of biomolecules and taking advantage of the use of racemic crystallography allowed the production of x-ray quality single crystals and the elucidation at 1.08 Å resolution of the solid state structure of a difficult target: the complex between glucopyranose and a water soluble macrocyclic receptor equipped with dendritic multianionic solubilizing chains.
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- 2016
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30. Iterative Evolution of an Abiotic Foldamer Sequence for the Recognition of Guest Molecules with Atomic Precision
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Ivan Huc, Yann Ferrand, Guillaume Lautrette, Barbara Wicher, Brice Kauffmann, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), and Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
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Stereochemistry ,helical capsule ,malic acid ,Sequence (biology) ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Molecular recognition ,foldamer ,Molecule ,[CHIM]Chemical Sciences ,cir- cular dichroism ,x-ray crystallography ,010405 organic chemistry ,Chemistry ,Hydrogen bond ,Foldamer ,General Chemistry ,NMR ,0104 chemical sciences ,tartaric acid ,Tartaric acid ,Malic acid ,molecular recognition ,Selectivity - Abstract
International audience; A synthetic helical aromatic oligoamide foldamer receptor with high affinity and selectivity for tartaric acid was subjected to a structure-based evolution of its sequence via mutations, additions and deletions of monomers to produce a new receptor having high affinity and selectivity for malic acid, a guest that differs from tartaric acid by a single oxygen atom. Seven iteratively modified sequences were synthesized. Detailed structural investigations of host-guest complexes were carried out systematically to guide the design of the next generation. A first outcome was a reversal of selectivity of the receptors, with a starting preference for tartaric acid over malic acid of over 10 2 and an ending sequence showing a preference for malic acid over tartaric acid of over 10 2. Another outcome was a very strong enhancement of the affinity for malic acid, despite the fact it has fewer recognition features for binding through polar interactions such as hydrogen bonds. Such level of discrimination between very much resembling guests exemplifies the amenability of foldamers to outstanding achievements in molecular recognition. Altogether, our results demonstrate the viability of a rational receptor design approach that exploits the modularity of foldamer sequences and, in the case of aromatic amide foldamers, their amenability to structural elucidation, their relative ease of synthesis and the predictability of their structure.
- Published
- 2016
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31. Identification of a Foldaxane Kinetic Byproduct during Guest-Induced Single to Double Helix Conversion
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Quan Gan, Yann Ferrand, Nagula Chandramouli, Brice Kauffmann, Didier Dubreuil, Ivan Huc, and Christophe Aube
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Circular dichroism ,Molecular model ,Stereochemistry ,Circular Dichroism ,Molecular Conformation ,Supramolecular chemistry ,macromolecular substances ,General Chemistry ,Kinetic energy ,Biochemistry ,Catalysis ,Kinetics ,chemistry.chemical_compound ,Crystallography ,Colloid and Surface Chemistry ,chemistry ,Tartaric acid ,Molecule ,Nuclear Magnetic Resonance, Biomolecular - Abstract
An aromatic oligoamide sequence was designed and synthesized to fold in a single helix having a large cavity and to behave as a host for a dumbbell-shaped guest derived from tartaric acid. NMR, molecular modeling, and circular dichroism (CD) evidence demonstrated the rapid formation of this 1:1 host-guest complex and induction of the helix handedness of the host by the guest. This complex was found to be a long-lived kinetic supramolecular byproduct, as it slowly transformed into a 2:2 host-guest complex with two guest molecules bound at the extremities of a double helix formed by the host, as shown by NMR and CD spectroscopy and a solid-state structure. The guest also induced the handedness of the double helical host, but with an opposite bias. The chiroptical properties of the system were thus found to revert with time as the 1:1 complex formed first, followed by the 2:2 complex.
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- 2012
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32. Template-Induced Screw Motions within an Aromatic Amide Foldamer Double Helix
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Ivan Huc, Hua Jiang, Yann Ferrand, Quan Gan, and Brice Kauffmann
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chemistry.chemical_compound ,Rotaxane ,chemistry ,Amide ,Helix ,X-ray crystallography ,Polymer chemistry ,Supramolecular chemistry ,Foldamer ,General Medicine ,General Chemistry ,Catalysis - Published
- 2011
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33. Parallel and Antiparallel Triple Helices of Naphthyridine Oligoamides
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Brice Kauffmann, Ivan Huc, Yann Ferrand, Joachim Garric, and Amol M. Kendhale
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Models, Molecular ,Molecular Structure ,Chemistry ,Hydrogen bond ,Supramolecular chemistry ,Hydrogen Bonding ,General Medicine ,General Chemistry ,Crystallography, X-Ray ,Antiparallel (biochemistry) ,Amides ,Catalysis ,Crystallography ,X-ray crystallography ,Molecule ,Naphthyridines ,Triple helix - Published
- 2010
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34. Electronic Energy Transfer Modulation in a Dynamic Foldaxane: Proof-of-Principle of a Lifetime-Based Conformation Probe
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Ivan Huc, Gediminas Jonusauskas, Luca Scarpantonio, Sergey A. Denisov, Quan Gan, Brice Kauffmann, Xiang Wang, Yann Ferrand, Nathan D. McClenaghan, Laboratoire Ondes et Matière d'Aquitaine (LOMA), Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Institut des Sciences Moléculaires (ISM), Université Montesquieu - Bordeaux 4-Université Sciences et Technologies - Bordeaux 1 (UB)-École Nationale Supérieure de Chimie et de Physique de Bordeaux (ENSCPB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Chimie et Biologie des Membranes et des Nanoobjets (CBMN), Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Institut Européen de Chimie et Biologie (IECB), Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), ANR-12-BS08-0007,FOSET,Architectures à base de foldamères pour le transport d'electrons(2012), European Project: 208702,EC:FP7:ERC,ERC-2007-StG,COMMOTION(2008), Université Montesquieu - Bordeaux 4-Université Sciences et Technologies - Bordeaux 1-École Nationale Supérieure de Chimie et de Physique de Bordeaux (ENSCPB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), Bergeret, Bernadette, BLANC - Architectures à base de foldamères pour le transport d'electrons - - FOSET2012 - ANR-12-BS08-0007 - BLANC - VALID, and Communication between Functional Molecules using Photocontrolled Ions - COMMOTION - - EC:FP7:ERC2008-09-01 - 2013-08-31 - 208702 - VALID
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Void (astronomy) ,010405 organic chemistry ,Chemistry ,Photochemistry ,Nanotechnology ,General Medicine ,General Chemistry ,Thread (computing) ,Chromophore ,Foldamers ,010402 general chemistry ,Reversible electronic energy transfer ,01 natural sciences ,Catalysis ,Molecular machine ,Ruthenium ,[PHYS.PHYS.PHYS-CHEM-PH] Physics [physics]/Physics [physics]/Chemical Physics [physics.chem-ph] ,0104 chemical sciences ,Molecular machines ,Modulation ,Proof of concept ,Chemical physics ,Helix ,[PHYS.PHYS.PHYS-CHEM-PH]Physics [physics]/Physics [physics]/Chemical Physics [physics.chem-ph] ,Luminescence - Abstract
International audience; Abiotic aromatic oligoamide foldamers are shown to self-assemble in solution to form a double helix, which can accommodate a bichromophoric thread in its central void. While in solution reversible electronic energy transfer is instilled between chromophoric termini of the free, flexible thread as evidenced through delayed luminescence, upon rigidification of the rod the chromophores are mutually distanced and effectively decoupled. Consequently, the chromophores display their individual photophysical characteristics. The observed conformation-dependent changes of dynamic luminescence properties, which are particularly sensitive to distance, offers a new strategy for lifetime-based detection of geometry on the molecular scale as demonstrated through real-time luminescence detection of molecular complexation leading to foldaxane formation.
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- 2015
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35. Iterative design of a helically folded aromatic oligoamide sequence for the selective encapsulation of fructose
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Cameron D. Mackereth, Yann Ferrand, Brice Kauffmann, Didier Dubreuil, Michel Laguerre, Ivan Huc, Guillaume Lautrette, Nagula Chandramouli, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Chimie Et Interdisciplinarité : Synthèse, Analyse, Modélisation (CEISAM), Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), and Université de Nantes (UN)-Université de Nantes (UN)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)
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Models, Molecular ,Modular structure ,Iterative design ,Chemistry ,General Chemical Engineering ,Spectrum Analysis ,Molecular Conformation ,Fructose ,Hydrogen Bonding ,General Chemistry ,Oligomer ,Combinatorial chemistry ,Amides ,Encapsulation (networking) ,chemistry.chemical_compound ,Organic chemistry ,[CHIM]Chemical Sciences - Abstract
The ab initio design of synthetic molecular receptors for a specific biomolecular guest remains an elusive objective, particularly for targets such as monosaccharides, which have very close structural analogues. Here we report a powerful approach to produce receptors with very high selectivity for specific monosaccharides and, as a demonstration, we develop a foldamer that selectively encapsulates fructose. The approach uses an iterative design process that exploits the modular structure of folded synthetic oligomer sequences in conjunction with molecular modelling and structural characterization to inform subsequent refinements. Starting from a first-principles design taking size, shape and hydrogen-bonding ability into account and using the high predictability of aromatic oligoamide foldamer conformations and their propensity to crystallize, a sequence that binds to β-D-fructopyranose in organic solvents with atomic-scale complementarity was obtained in just a few iterative modifications. This scheme, which mimics the adaptable construction of biopolymers from a limited number of monomer units, provides a general protocol for the development of selective receptors.
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- 2015
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36. Tuning the Guest-Binding Ability of a Helically Folded Capsule by In Situ Modification of the Aromatic Oligoamide Backbone
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Didier Dubreuil, Muriel Pipelier, Yann Ferrand, Christophe Aube, Brice Kauffmann, Christine Geneviève Juliette Thobie, Guillaume Lautrette, Ivan Huc, Virginie Blot, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Hémodynamique, Interaction Fibrose et Invasivité tumorales Hépatiques (HIFIH), Université d'Angers (UA), Centre Hospitalier Universitaire d'Angers (CHU Angers), PRES Université Nantes Angers Le Mans (UNAM), Chimie Et Interdisciplinarité : Synthèse, Analyse, Modélisation (CEISAM), Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), Université de Nantes (UN)-Université de Nantes (UN)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC), Soutien à la Recherche de l'Institut Européen de Chimie Biologique, Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut Européen de Chimie et de Biologie-Université Sciences et Technologies - Bordeaux 1-Institut de Chimie du CNRS (INC), Institut Européen de Chimie et Biologie (IECB), and Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM)
- Subjects
Conformational change ,Stereochemistry ,Organic Chemistry ,General Chemistry ,Carbon-13 NMR ,Catalysis ,Pyridazine ,chemistry.chemical_compound ,Crystallography ,Molecular recognition ,chemistry ,Pyridine ,Tartaric acid ,Proton NMR ,[CHIM]Chemical Sciences ,Pyrrole - Abstract
Starting from a previously described aromatic oligoamide helically folded capsule that binds tartaric acid with high affinity and diastereoselectivity, we demonstrate the feasibility of the direct in situ modification of the helix backbone, which results in a conformational change that reduces its affinity for guests by two orders of magnitude. Specifically, ring contraction of the central pyridazine unit into a pyrrole in the full helical sequence was investigated by using electrochemical and chemical processes. The sequence containing the pyrrole was synthesized independently in a convergent manner to ascertain its structure. The conformation of the pyrrolic folded capsule was elucidated in the solid state by X-ray crystallography and in solution by using (1)H and (13)C NMR spectroscopy. Solution studies revealed an unanticipated solvent-dependent equilibrium between the anti-anti and syn-syn conformations of the pyrrole ring with respect to its two adjacent pyridine units. Titrations of the pyrrole-containing sequence monitored by (1)H NMR spectroscopy confirmed the expected drop in affinity for tartaric acid and malic acid that arises from the conformation change in the backbone that follows the replacement of the pyridazine by a pyrrole. The reduction of the pyridazine to a pyrrole was characterized by cyclic voltammetry both on the entire sequence and on a shorter precursor. The lower cathodic potential of the precursor made its preparative-scale electroreduction possible. Direct in situ modification of the pyridazine within the entire capsule sequence was achieved chemically by using zinc in acetic acid.
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- 2014
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37. Structure elucidation of host-guest complexes of tartaric and malic acids by quasi-racemic crystallography
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Christophe Aube, Guillaume Lautrette, Didier Dubreuil, Nagula Chandramouli, Brice Kauffmann, Ivan Huc, Yann Ferrand, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Institut Européen de Chimie et Biologie (IECB), Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM), Centre Hospitalier Universitaire d'Angers (CHU Angers), PRES Université Nantes Angers Le Mans (UNAM), Chimie Et Interdisciplinarité : Synthèse, Analyse, Modélisation (CEISAM), Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), and Université de Nantes (UN)-Université de Nantes (UN)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)
- Subjects
Racemic crystallography ,Chemistry ,Stereochemistry ,010405 organic chemistry ,Diastereomer ,Solid-state ,General Chemistry ,General Medicine ,010402 general chemistry ,01 natural sciences ,Catalysis ,0104 chemical sciences ,3. Good health ,Crystallography ,[CHIM]Chemical Sciences ,Enantiomer - Abstract
Racemic on the outside, but not inside: Aromatic-foldamer hosts are enantiomers and as such prefer to co-crystallize even though the guests (e.g. L-tartaric acid, see picture) in each host are not present as enantiomers. This behavior allows a one-step structure elucidation of diastereomeric and quasi-racemic structures in the solid state.
- Published
- 2013
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38. High-Affinity Disaccharide Binding by Tricyclic Synthetic Lectins
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Matthew P. Crump, Emmanuel Klein, Anthony P. Davis, Bunyarithi Sookcharoenpinyo, Chenfeng Ke, Peter R. Brotherhood, D. Barney Walker, and Yann Ferrand
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chemistry.chemical_classification ,Disaccharide binding ,biomimetic hosts ,Stereochemistry ,Supramolecular chemistry ,carbohydrates ,Water ,receptors ,Hydrogen Bonding ,General Chemistry ,General Medicine ,Disaccharides ,Catalysis ,supramolecular chemistry ,Molecular recognition ,chemistry ,Biomimetics ,Lectins ,Thermodynamics ,molecular recognition ,Hydrophobic and Hydrophilic Interactions ,Monte Carlo Method ,Protein Binding ,Tricyclic - Abstract
Rigid preorganization is not always the best approach to molecular recognition. Unlike previous synthetic lectins, new receptors (see picture) were synthesized that possess conformational freedom which allows hydrophobically driven collapse of the cavity. Nonetheless, they bind their carbohydrate targets in water with ground-breaking affinities (up to 4500 M−1 for methyl cellobioside, R=Me) and selectivities.
- Published
- 2012
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39. Electrochemical synthesis and characterisation of alternating tripyridyl-dipyrrole molecular strands with multiple nitrogen-based donor-acceptor binding sites
- Author
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Karène Urgin, Michel Evain, Yann Ferrand, Thierry Delaunay, Alexandra Tabatchnik‐Rebillon, Sylvie Condon, Marine Soulard, Muriel Pipelier, Eric Léonel, Christine Thobie-Gautier, Denis Jacquemin, Christiane Guguen-Guillouzo, Jacques Lebreton, Jean-Yves Le Questel, Eric Renault, Virginie Blot, Rémy Le Guével, Hicham Bakkali, G. T. Manh, Ivan Huc, Brice Kauffmann, Christophe Aube, Didier Dubreuil, Aurélien Planchat, Chimie Et Interdisciplinarité : Synthèse, Analyse, Modélisation (CEISAM), Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), Université de Nantes (UN)-Université de Nantes (UN)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Foie, métabolismes et cancer, Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique ), Chimie et Biologie des Membranes et des Nanoobjets (CBMN), Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Institut de Chimie et des Matériaux Paris-Est (ICMPE), Institut de Chimie du CNRS (INC)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS), Institut des Matériaux Jean Rouxel (IMN), Université de Nantes (UN)-Université de Nantes (UN)-Ecole Polytechnique de l'Université de Nantes (EPUN), Université de Rennes (UR)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique ), Université de Nantes (UN)-Université de Nantes (UN)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC), Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC), Université de Nantes (UN)-Université de Nantes (UN)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Ecole Polytechnique de l'Université de Nantes (EPUN), and Université de Nantes (UN)-Université de Nantes (UN)
- Subjects
Male ,Pyridines ,Ligands ,01 natural sciences ,chemistry.chemical_compound ,N ligands ,MESH: Ligands ,MESH: Nitrogen ,Zinc bromide ,Pyrrole ,Molecular Structure ,Negishi coupling ,MESH: Models, Chemical ,MESH: Drug Screening Assays, Antitumor ,MESH: Electrochemical Techniques ,MESH: Copper ,MESH: Pyrroles ,Female ,Nitrogen ,Inorganic chemistry ,MESH: Molecular Structure ,Antineoplastic Agents ,010402 general chemistry ,Electrosynthesis ,Catalysis ,MESH: Cell Proliferation ,Pyridine ,Molecule ,Humans ,Pyrroles ,Acetonitrile ,Cell Proliferation ,Binding Sites ,MESH: Humans ,010405 organic chemistry ,Organic Chemistry ,MESH: Pyridines ,[SDV.MHEP.HEG]Life Sciences [q-bio]/Human health and pathology/Hépatology and Gastroenterology ,General Chemistry ,Electrochemical Techniques ,Chromophore ,MESH: Catalysis ,MESH: Male ,0104 chemical sciences ,Crystallography ,chemistry ,Models, Chemical ,electrochemistry ,MESH: Binding Sites ,copper ,MESH: Antineoplastic Agents ,nitrogen heterocycles ,Drug Screening Assays, Antitumor ,MESH: Female ,ring contraction - Abstract
International audience; Synthesis of alternating pyridine-pyrrole molecular strands composed of two electron-rich pyrrole units (donors) sandwiched between three pyridinic cores (acceptors) is described. The envisioned strategy was a smooth electrosynthesis process involving ring contraction of corresponding tripyridyl-dipyridazine precursors. 2,6-Bis[6-(pyridazin-3-yl)]pyridine ligands 2a-c bearing pyridine residues at the terminal positions were prepared in suitable quantities by a Negishi metal cross-coupling procedure. The yields of heterocyclic coupling between 2-pyridyl zinc bromide reagents 12a-c and 2,6-bis(6-trifluoromethanesulfonylpyridazin-3-yl)pyridine increased from 68 to 95% following introduction of electron-donating methyl groups on the metallated halogenopyridine units. Favorable conditions for preparative electrochemical reduction of tripyridyl-dipyridazines 2b,c were established in THF/acetate buffer (pH 4.6)/acetonitrile to give the targeted 2,6-bis[5-(pyridin-2-yl)pyrrol-2-yl]pyridines 1b and 1c in good yields. The absorption behavior of the donor-acceptor tripyridyl-dipyrrole ligands was evaluated and compared to theoretical calculations. Highly fluorescent properties of these chromophores were found (ν(em)≈2 × 10(4) cm(-1) in MeOH and CH(2)Cl(2)), and both pyrrolic ligands exhibit a remarkable quantum yield in CH(2)Cl(2) (φ(f)=0.10). Structural studies in the solid state established the preferred cis conformation of the dipyrrolic ligands, which adopting a planar arrangement with an embedded molecule of water having a complexation energy exceeding 10 kcal mol(-1). The ability of the tripyridyl-dipyrrole to complex two copper(II) ions in a pentacoordinate square was investigated.
- Published
- 2010
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40. Diastereoselective Encapsulation of Tartaric Acid by a Helical Aromatic Oligoamide
- Author
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Amol M. Kendhale, Cécile Marie, Muriel Pipelier, Ivan Huc, Didier Dubreuil, Brice Kauffmann, Virginie Blot, Axelle Grélard, Yann Ferrand, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), Université de Bordeaux (UB)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Eindhoven Univ Technol, Lab Funct Organ Mat & Devices, NL-5600 MB Eindhoven, Netherlands, Département de recherche sur les procédés pour la mine et le recyclage du combustible (DMRC), CEA-Direction des Energies (ex-Direction de l'Energie Nucléaire) (CEA-DES (ex-DEN)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Chimie Et Interdisciplinarité : Synthèse, Analyse, Modélisation (CEISAM), Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), Université de Nantes (UN)-Université de Nantes (UN)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC), and Université de Nantes (UN)-Université de Nantes (UN)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
chemistry.chemical_classification ,010405 organic chemistry ,Chemistry ,Hydrogen bond ,Carboxylic acid ,Solid-state ,Foldamer ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Solvent ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Polymer chemistry ,Tartaric acid ,Organic chemistry ,[CHIM]Chemical Sciences ,Selectivity - Abstract
A helical aromatic oligoamide foldamer encapsulates tartaric acid with exceptional affinity, selectivity, and diastereoselectivity. The structure of the complex has been elucidated both in solution by NMR spectroscopy and in the solid state by X-ray crystallography, making it possible to rationalize the strong effects observed, particularly the role of hydrogen bonds between the hydroxyl and carboxylic acid groups of tartaric acid and the inner wall of the helically folded capsule, which completely surrounds the guest and insulates it from the solvent.
- Published
- 2010
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41. A synthetic lectin for O-linked beta-N-acetylglucosamine
- Author
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Anthony P. Davis, Jesús Jiménez-Barbero, Matthew P. Crump, Sampat Ingale, Nicholas P. Barwell, Emmanuel Klein, Yann Ferrand, Geert-Jan Boons, and Cristina Vicent
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Magnetic Resonance Spectroscopy ,Stereochemistry ,Wheat Germ Agglutinins ,Carbohydrates ,Molecular Conformation ,O-Linked β-N-acetylglucosamine ,Catalysis ,Article ,Acetylglucosamine ,chemistry.chemical_compound ,Glucosamine ,Lectins ,Amino Acid Sequence ,Peptide sequence ,chemistry.chemical_classification ,biology ,Chemistry ,Lectin ,Glycoside ,General Chemistry ,General Medicine ,Glycopeptide ,Wheat germ agglutinin ,carbohydrates (lipids) ,Kinetics ,Biochemistry ,biology.protein ,E-Selectin ,Protein Processing, Post-Translational - Abstract
5 páginas, 4 figuras, 2 tablas -- PAGS nros. 1775-1779, Changing employment: Receptor 1 binds beta-N-acetylglucosaminyl (beta-GlcNAc) up to 100 times more strongly than it does glucose. This synthetic lectin shows affinities similar to wheat germ agglutinin (WGA), a natural lectin used to bind GlcNAc. Remarkably, 1 is more selective than WGA. It favors especially the glycoside unit in glycopeptide 2, a model of the serine-O-GlcNAc posttranslational protein modification, This work was supported by the EU (HPRN-CT-2002-00190), the EPSRC (EP/D060192/1), the National Cancer Institute of the NIH (RO1 CA88986) and the Ministry of Science and Innovation of Spain (CTQ2006-10874-C02)
- Published
- 2009
42. Solvent effects in carbohydrate binding by synthetic receptors: implications for the role of water in natural carbohydrate recognition
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Nicholas P. Barwell, Anthony P. Davis, Yann Ferrand, and Emmanuel Klein
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Models, Molecular ,Biological Products ,Molecular Structure ,Hydrogen bond ,Chemistry ,Carbohydrates ,Water ,General Chemistry ,Carbohydrate ,Catalysis ,Hydrophobic effect ,Molecular recognition ,Synthetic Receptors ,Solvents ,Organic chemistry ,Solvent effects - Published
- 2008
43. Poly(9,9′-spirobifluorene-manganese porphyrin): a new catalytic material for oxidation of alkenes by iodobenzene diacetate and iodosylbenzeneElectronic supplementary information (ESI) available: methods for synthesis of all compounds, physical data and detailed procedures for the catalytic oxidations. See http://www.rsc.org/suppdata/cc/b3/b301717f
- Author
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Joëlle Raul-Berthelot, Gérard Simonneaux, Yann Ferrand, Cyril Poriel, and Paul Le Maux
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Working electrode ,Iodobenzene ,Metals and Alloys ,General Chemistry ,engineering.material ,Electrochemistry ,Photochemistry ,Porphyrin ,Catalysis ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Styrene ,chemistry.chemical_compound ,Coating ,chemistry ,Manganese porphyrin ,Materials Chemistry ,Ceramics and Composites ,engineering - Abstract
Anodic oxidation of tetraspirobifluorene-manganese porphyrin lead to the coating of the working electrode by insoluble electroactive poly(9,9′-spirobifluorene-manganese porphyrin) films for which electrochemical behaviour and physicochemical properties are described; these polymeric materials are able to catalyze the heterogeneous epoxidation of styrene with iodobenzene diacetate and iodosylbenzene.
- Published
- 2003
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44. Inside Cover: A Synthetic Lectin for O-Linked β-N-Acetylglucosamine (Angew. Chem. Int. Ed. 10/2009)
- Author
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Anthony P. Davis, Jesús Jiménez-Barbero, Nicholas P. Barwell, Yann Ferrand, Geert-Jan Boons, Matthew P. Crump, Emmanuel Klein, Sampat Ingale, and Cristina Vicent
- Subjects
Molecular recognition ,biology ,Chemistry ,Stereochemistry ,INT ,Supramolecular chemistry ,biology.protein ,Lectin ,General Chemistry ,Receptor ,Affinities ,O-Linked β-N-acetylglucosamine ,Catalysis - Abstract
Carbohydrates are slippery customers in water. Camouflaged by solvent-mimicking hydroxy groups, they make challenging targets, even for natural receptors. In their Communication on page 1775 ff., A. P. Davis and co-workers describe a synthetic receptor that is remarkably effective for the important β-N-acetylglucosaminyl (β-GlcNAC) unit. The affinities of the receptor are good and its selectivities are excellent, even by the standards of natural carbohydrate-binding proteins.
- Published
- 2009
- Full Text
- View/download PDF
45. Selective disaccharide binding by a macrotetracyclic receptor
- Author
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Emmanuel Klein, Anthony P. Davis, Elizabeth K. Auty, and Yann Ferrand
- Subjects
Disaccharide binding ,Chemistry ,Stereochemistry ,Circular Dichroism ,Metals and Alloys ,Receptors, Cell Surface ,General Chemistry ,Disaccharides ,Catalysis ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Materials Chemistry ,Ceramics and Composites ,Spectrophotometry, Ultraviolet ,Receptor ,Nuclear Magnetic Resonance, Biomolecular ,Protein Binding - Abstract
A new carbohydrate receptor possesses a C3-symmetric polar cavity capable of encapsulating disaccharides; binding to beta-maltosyl is preferred, complementing previous systems which have favoured "all-equatorial" substrates.
- Published
- 2007
- Full Text
- View/download PDF
46. Poly(ruthenium carbonyl spirobifluorenylporphyrin): a new polymer used as a catalytic device for carbene transferElectronic supplementary information (ESI) available: experimental details. See http://www.rsc.org/suppdata/cc/b3/b306021g
- Author
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Joëlle Rault-Berthelot, Yann Ferrand, Gérard Simonneaux, Paul Le Maux, Cyril Poriel, and Christine Paul
- Subjects
chemistry.chemical_classification ,Metals and Alloys ,chemistry.chemical_element ,General Chemistry ,Polymer ,Sigmatropic reaction ,Photochemistry ,Porphyrin ,Catalysis ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Ruthenium ,chemistry.chemical_compound ,Ethyl diazoacetate ,chemistry ,Electrode ,Materials Chemistry ,Ceramics and Composites ,Carbene - Abstract
Oxidative electropolymerization of tetraspirobifluorenyl porphyrin ruthenium(II) carbonyl complexes can be used to coat Pt electrodes with polymeric films; after being removed from the electrode, these polymeric materials are able to catalyze the heterogeneous cyclopropanations and 2,3 sigmatropic rearrangements with ethyl diazoacetate.
- Published
- 2003
- Full Text
- View/download PDF
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