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We determined the allelic (X+/X-, M+/M-, and E+/E-) distribution frequencies of the XbaI, MspI, and EcoRI restriction fragment length polymorphisms (RFLPs) in the apolipoprotein B gene in a control group of 374 healthy Chinese, Malays, and Indians and in a hyperlipidemic cohort of 131 Chinese patients. Covariability between the RFLPs and serum lipid, lipoprotein, and apolipoprotein concentrations was also studied. We found a lower frequency (average 0.0829) of the X+ allele and higher frequencies of the E+ (average 0.9452) and M+ (average 0.9772) alleles in our study population compared with frequencies reported in other populations. The 3 polymorphic sites did not contribute to significant variations in lipid levels (p > 0.1 in all cases). Also, there was no significant variation in genotype frequencies between the control subjects and the hyperlipidemic subjects. Despite their relative close proximity within the APOB gene sequence, the 3 polymorphic sites did not show any significant linkage disequilibrium. However, the presence of the X+ cutting site was in linkage disequilibrium with the Del allele of the 5' insertion-deletion polymorphism and the E-allele was in linkage disequilibrium with the 3' VNTR located near the 3' end of the coding region of the APOB gene.

A single nucleotide (A-->G) substitution in codon 370 (exon 8) of the low density lipoprotein (LDL) receptor gene results in loss of a StuI restriction site and an amino acid change (Ala370-->Thr) in the translated protein. This biallelic polymorphism has been associated with significant variations in plasma lipid concentrations in several Caucasian populations. We investigated its prevalence and impact on lipid metabolism in 539 Singaporeans of Chinese, Malay and Indian descent. The average frequency of 0.003 for the Thr370 allele and heterozygosity of 0.0056 were 10- to 20-fold lower than those reported in Caucasians (range 0.075 to 0.107). Distribution of the genotypes satisfied the Hardy-Weinberg equilibrium (chi 2 = 0.004, P = 0.948). We also found ethnic variation in the allele frequencies of Thr370 among the three races studied (0.009 in Indians, 0.007 in Malays, and 0.003 in Chinese). However, this needs to be confirmed with larger numbers. No significant correlation between genotype and serum concentrations of total cholesterol, triglyceride, high density lipoprotein (HDL)-cholesterol, LDL-cholesterol, lipoprotein(a), apolipoprotein A and apolipoprotein B was found in our study. This argues strongly against a major contribution or impact of this intragenic polymorphic locus on modulating the serum lipid profiles of the study subjects.