20 results on '"Chammas, Roger"'
Search Results
2. Extracellular Vesicle-Packaged miR-195-5p Sensitizes Melanoma to Targeted Therapy with Kinase Inhibitors.
- Author
-
Santos, Nathalia L., Bustos, Silvina O., Reis, Patricia P., Chammas, Roger, and Andrade, Luciana N. S.
- Subjects
BRAF genes ,KINASE inhibitors ,GENE expression ,EXTRACELLULAR vesicles ,MELANOMA ,CANCER invasiveness - Abstract
Management of advanced melanoma remains challenging, with most BRAF (B-Raf proto-oncogene, serine/threonine kinase)-mutated metastatic patients relapsing within a few months upon MAPK inhibitors treatment. Modulation of tumor-derived extracellular vesicle (EVs) cargo with enrichment of antitumoral molecules is a promising strategy to impair tumor progression and increase treatment response. Herein, we report that restored expression of miR-195-5p, down-regulated in melanoma favoring drug resistance, increases the release of EVs enriched in the tumor suppressor miRNAs, miR-195-5p, miR-152-3p, and miR-202-3p. Incorporating these EVs by bystander tumor cells resulted in decreased proliferation and viability, accompanied by a reduction in CCND1 and YAP1 mRNA levels. Upon treatment with MAPK inhibitors, miR-195 EVs significantly decreased BCL2-L1 protein levels and increased cell death ratio and treatment efficacy. Additionally, EVs exogenously loaded with miR-195-5p by electroporation reduced tumor volume in vivo and impaired engraftment and growth of xenografts implanted with melanoma cells exposed to MAPK inhibitors. Our study shows that miR-195-5p antitumoral activity can be spread to bystander cells through EVs, improving melanoma response to targeted therapy and revealing a promising EV-based strategy to increase clinical response in patients harboring BRAF mutations. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
3. Perfil bioquímico y significado clínico de los genes de la vía MAPK /CINASA en el diagnóstico de neoplasias tiroides
- Author
-
Santos, Joyce Nascimento, Silva, Raissa Monteiro da, Bhattacharjee, Tanmoy Tapobrata, Kulcsar, Marco Aurélio Vamondes, Uno, Miyuki, Chammas, Roger, and Canevari, Renata de Azevedo
- Subjects
Thyroid ,MAPK/KINASE ,FTIR ,Tireoide ,Marcador molecular ,Gene expression ,Molecular marker ,Expressão gênica ,Espectroscopia ,Tiroides ,Spectroscopy ,La expresion genica - Abstract
Thyroid neoplasms are the main types of endocrine malignancy, their incidence increasing in recent years. Routine diagnosis may present inconclusive results, leading to the need for using additional techniques that are more precise, such as molecular analysis. Therefore, it is essential to search for molecular markers for the diagnosis of these malignancies and their different histological types. The objective of this study was to identify diagnostic molecular markers for papillary thyroid carcinomas (PTC) and goiter lesions. For this, expression of genes belonging to the MAPK/KINASE pathway was assessed by the RT-qPCR technique. Additionally, complete biochemical profiles of the samples were obtained using Fourier transform infrared spectroscopy (FTIR). Results of RT-qPCR suggest that FOS, JUN, MAP2K6, CCNA1, SFN genes have the potential to be tumor markers of thyroid lesions, and the MAP2K6, CCNA1, SFN genes further have the potential to distinguish PTC samples from other thyroid lesions. FTIR results showed that PTC lesions can be distinguished from normal and benign tissues with 95.83% efficiency; changes in nucleic acids being the major classifying factor. Overall, results suggest potential of molecular and FTIR analysis in diagnosis of thyroid cancer. Las neoplasias tiroideas son los principales tipos de malignidad endocrina, incrementándose su incidencia en los últimos años. El diagnóstico de rutina puede presentar resultados no concluyentes, lo que obliga a utilizar técnicas adicionales más precisas, como el análisis molecular. Por lo tanto, es fundamental la búsqueda de marcadores moleculares para el diagnóstico de estas neoplasias malignas y sus diferentes tipos histológicos. El objetivo de este estudio fue identificar marcadores moleculares de diagnóstico para carcinomas papilares de tiroides (CPT) y lesiones de bocio. Para ello, se evaluó la expresión de genes pertenecientes a la vía MAPK/KINASE mediante la técnica RT-qPCR. Además, se obtuvieron perfiles bioquímicos completos de las muestras mediante espectroscopia infrarroja transformada de Fourier (FTIR). Los resultados de RT-qPCR sugieren que los genes FOS, JUN, MAP2K6, CCNA1, SFN tienen el potencial de ser marcadores tumorales de lesiones tiroideas, y los genes MAP2K6, CCNA1, SFN tienen además el potencial de distinguir muestras de CPT de otras lesiones tiroideas. Los resultados de FTIR mostraron que las lesiones de CPT se pueden distinguir de los tejidos normales y benignos con una eficiencia del 95,83 %; siendo los cambios en los ácidos nucleicos el principal factor de clasificación. En general, los resultados sugieren el potencial del análisis molecular y FTIR en el diagnóstico del cáncer de tiroides. As neoplasias da tireoide são os principais tipos de malignidade endócrina, apresentando incidência aumentada nos últimos anos. O diagnóstico de rotina pode apresentar resultados inconclusivos, levando à necessidade de utilização de técnicas adicionais mais precisas, tais como a análise molecular. Portanto, é essencial a busca de marcadores moleculares para o diagnóstico dessas neoplasias e seus diferentes tipos histológicos. O objetivo deste estudo foi identificar marcadores moleculares diagnósticos para carcinoma papilífero de tireoide (CPT) e lesões de bócio. Para isso, a expressão de genes pertencentes à via MAPK/KNASE foi avaliada pela técnica de RT-qPCR. Adicionalmente, perfis bioquímicos completos das amostras foram obtidos por meio da espectroscopia de infravermelho com transformada de Fourier (FTIR). Os resultados do RT-qPCR sugerem que os genes FOS, JUN, MAP2K6, CCNA1, SFN têm o potencial de serem marcadores tumorais de lesões da tireoide, e os genes MAP2K6, CCNA1, SFN têm ainda o potencial de distinguir amostras de CPT de outras lesões de tireoide. Os resultados do FTIR mostraram que as lesões de CPT podem ser diferenciadas de tecidos normais e benignos com 95,83% de eficiência; sendo as alterações nos ácidos nucleicos o principal fator de classificação. No geral, os resultados sugerem o potencial da análise molecular e do FTIR no diagnóstico do câncer de tireoide.
- Published
- 2022
4. miRNA and mRNA Expression Profiles Associated with Lymph Node Metastasis and Prognosis in Penile Carcinoma.
- Author
-
Murta, Claudio B., Furuya, Tatiane K., Carrasco, Alexis G. M., Uno, Miyuki, Sichero, Laura, Villa, Luisa L., Faraj, Sheila F., Coelho, Rafael F., Guglielmetti, Giuliano B., Cordeiro, Mauricio D., Leite, Katia R. M., Nahas, William C., Chammas, Roger, and Pontes Jr., José
- Subjects
LYMPHATIC metastasis ,PENILE cancer ,GENE expression ,PROGNOSIS ,MICRORNA ,PENIS ,PROGRESSION-free survival - Abstract
Penile cancer (PeC) is a rare disease, and no prognostic biomarkers have been adopted in clinical practice yet. The objective of the present study was to identify differentially expressed miRNAs (DEmiRs) and genes (DEGs) as potential biomarkers for lymph node metastasis and other prognostic factors in PeC. Tumor samples were prospectively obtained from 24 patients with squamous cell carcinoma of the penis. miRNA microarray analysis was performed comparing tumors from patients with inguinal lymph node metastatic and localized disease, and the results were validated by qRT-PCR. Eighty-three gene expression levels were also compared between groups through qRT-PCR. Moreover, DEmiRs and DEGs expression levels were correlated with clinicopathological variables, cancer-specific (CSS), and overall survival (OS). TAC software, TM4 MeV 4.9 software, SPSS v.25.0, and R software v.4.0.2 were used for statistical analyses. We identified 21 DEmiRs in microarray analysis, and seven were selected for validation. miR-744-5p and miR-421 were overexpressed in tissue samples of metastatic patients, and high expression of miR-421 was also associated with lower OS. We found seven DEGs (CCND1, EGFR, ENTPD5, HOXA10, IGF1R, MYC, and SNAI2) related to metastatic disease. A significant association was found between increased MMP1 expression and tumor size, grade, pathological T stage, and perineural invasion. Other genes were also associated with clinicopathological variables, CSS and OS. Finally, we found changes in mRNA–miRNA regulation that contribute to understanding the mechanisms involved in tumor progression. Therefore, we identified miRNA and mRNA expression profiles as potential biomarkers associated with lymph node metastasis and prognosis in PeC, in addition to disruption in mRNA–miRNA regulation during disease progression. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
5. MicroRNA-195 acts as an anti-proliferative miRNA in human melanoma cells by targeting Prohibitin 1.
- Author
-
Ramos Cirilo, Priscila Daniele, de Sousa Andrade, Luciana Nogueira, Silva Corrêa, Bruna Renata, Qiao, Mei, Furuya, Tatiane Katsue, Chammas, Roger, Ferraz Penalva, Luiz Otavio, Cirilo, Priscila Daniele Ramos, Corrêa, Bruna Renata Silva, and Penalva, Luiz Otavio Ferraz
- Subjects
MICRORNA ,MELANOMA ,PROHIBITIN ,CANCER cells ,CELL death ,CANCER cell proliferation ,GENE expression ,APOPTOSIS ,CELL lines ,CELL physiology ,CELL motility ,CISPLATIN ,DRUG resistance in cancer cells ,GENES ,GENETIC techniques ,PROTEINS ,RNA ,SULFONAMIDES ,INDOLE compounds ,DACARBAZINE - Abstract
Background: Melanoma is the most lethal type of skin cancer. Since chemoresistance is a significant barrier, identification of regulators affecting chemosensitivity is necessary in order to create new forms of intervention. Prohibitin 1 (PHB1) can act as anti-apoptotic or tumor suppressor molecule, depending on its subcellular localization. Our recent data shown that accumulation of PHB1 protects melanoma cells from chemotherapy-induced cell death. Lacking of post-transcriptional regulation of PHB1 could explain this accumulation. Interestingly, most of melanoma patients have down-regulation of microRNA-195. Here, we investigate the role of miR-195, its impact on PHB1 expression, and on chemosensitivity in melanoma cells.Methods: TCGA-RNAseq data obtained from 341 melanoma patient samples as well as a panel of melanoma cell lines were used in an expression correlation analysis between PHB1 and predicted miRNAs. miR-195 impact on PHB1 mRNA and protein levels and relevance of this regulation were investigated in UACC-62 and SK-MEL-5 melanoma lines by RT-qPCR and western blot, luciferase reporter and genetic rescue experiments. Cell proliferation, cell-cycle analysis and caspase 3/7 assay were performed to investigate the potential action of miR-195 as chemosensitizer in melanoma cells treated with cisplatin and temozolomide.Results: Analysis of the TCGA-RNAseq revealed a significant negative correlation (Pearson) between miR-195 and PHB1 expression. Moreover, RT-qPCR data showed that miR-195 is down-regulated while PHB1 is up-regulated in a collection of melanoma cells. We demonstrated that miR-195 regulates PHB1 directly by RT-qPCR and western blot in melanoma cells and luciferase assays. To establish PHB1 as a relevant target of miR-195, we conducted rescue experiments in which we showed that PHB1 transgenic expression could antagonize the suppressive effect miR-195 on the proliferation of melanoma cells. Finally, transfection experiments combined with drug treatments performed in the UACC-62 and SK-MEL-5 melanoma cells corroborated miR-195 as potential anti-proliferative agent, with potential impact in sensitization of melanoma cell death.Conclusions: This study support the role of miR-195 as anti-proliferative miRNA via targeting of PHB1 in melanoma cells. [ABSTRACT FROM AUTHOR]- Published
- 2017
- Full Text
- View/download PDF
6. Galectin-3 Up-Regulation in Hypoxic and Nutrient Deprived Microenvironments Promotes Cell Survival.
- Author
-
Ikemori, Rafael Yamashita, Machado, Camila Maria Longo, Furuzawa, Karina Mie, Nonogaki, Suely, Osinaga, Eduardo, Umezawa, Kazuo, de Carvalho, Marcelo Alex, Verinaud, Liana, and Chammas, Roger
- Subjects
GLIOBLASTOMA multiforme ,GALECTINS ,HYPOXIA-inducible factors ,CARRIER proteins ,GALACTOSIDES ,CELL growth ,LABORATORY mice - Abstract
Galectin-3 (gal-3) is a β-galactoside binding protein related to many tumoral aspects, e.g. angiogenesis, cell growth and motility and resistance to cell death. Evidence has shown its upregulation upon hypoxia, a common feature in solid tumors such as glioblastoma multiformes (GBM). This tumor presents a unique feature described as pseudopalisading cells, which accumulate large amounts of gal-3. Tumor cells far from hypoxic/nutrient deprived areas express little, if any gal-3. Here, we have shown that the hybrid glioma cell line, NG97ht, recapitulates GBM growth forming gal-3 positive pseudopalisades even when cells are grafted subcutaneously in nude mice. In vitro experiments were performed exposing these cells to conditions mimicking tumor areas that display oxygen and nutrient deprivation. Results indicated that gal-3 transcription under hypoxic conditions requires previous protein synthesis and is triggered in a HIF-1α and NF-κB dependent manner. In addition, a significant proportion of cells die only when exposed simultaneously to hypoxia and nutrient deprivation and demonstrate ROS induction. Inhibition of gal-3 expression using siRNA led to protein knockdown followed by a 1.7–2.2 fold increase in cell death. Similar results were also found in a human GBM cell line, T98G. In vivo, U87MG gal-3 knockdown cells inoculated subcutaneously in nude mice demonstrated decreased tumor growth and increased time for tumor engraftment. These results indicate that gal-3 protected cells from cell death under hypoxia and nutrient deprivation in vitro and that gal-3 is a key factor in tumor growth and engraftment in hypoxic and nutrient-deprived microenvironments. Overexpression of gal-3, thus, is part of an adaptive program leading to tumor cell survival under these stressing conditions. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
7. Prohibitin Expression Deregulation in Gastric Cancer Is Associated with the 3′ Untranslated Region 1630 C>T Polymorphism and Copy Number Variation.
- Author
-
Leal, Mariana Ferreira, Cirilo, Priscila Daniele Ramos, Mazzotti, Tatiane Katsue Furuya, Calcagno, Danielle Queiroz, Wisnieski, Fernanda, Demachki, Samia, Martinez, Margarita Cortes, Assumpção, Paulo Pimentel, Chammas, Roger, Burbano, Rommel Rodríguez, and Smith, Marília Cardoso
- Subjects
PROHIBITIN ,PROTEIN expression ,STOMACH cancer ,GENETIC polymorphisms ,DNA copy number variations ,TUMOR suppressor genes ,CANCER genetics - Abstract
PHB is a reported oncogene and tumor suppressor in gastric cancer. Here, we evaluated whether the PHB copy number and the rs6917 polymorphism affect its expression in gastric cancer. Down-regulation and up-regulation of PHB were observed in the evaluated tumors. Reduced expression was associated with tumor dedifferentiation and cancer initiation. The T allele of the rs6917 polymorphism was associated with reduced PHB mRNA levels. Moreover, the up-regulation of PHB appeared to be regulated by the gain of additional gene copies. Thus, PHB copy number variation and differential expression of the rs6917 polymorphism may play a role in PHB transcriptional regulation. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
8. Deregulated expression of Nucleophosmin 1 in gastric cancer and its clinicopathological implications.
- Author
-
Leal, Mariana Ferreira, Mazzotti, Tatiane Katsue Furuya, Calcagno, Danielle Queiroz, Cirilo, Priscila Daniele Ramos, Martinez, Margarita Cortes, Demachki, Samia, Assumpção, Paulo Pimentel, Chammas, Roger, Burbano, Rommel Rodríguez, and Smith, Marília Cardoso Cardoso
- Subjects
STOMACH cancer patients ,NUCLEOPHOSMIN ,MESSENGER RNA ,PROTEINS ,BIOMOLECULES - Abstract
Background The process of gastric carcinogenesis still remains to be elucidated. The identification of genes related to this process may help to reduce mortality rates through early diagnosis and the development of new anticancer therapies. Nucleophosmin 1 (NPM1) acts in ribosome biogenesis, centrosome duplication, maintenance of genomic stability, and embryonic development. Recently, NPM1 has been implicated in the tumorigenesis processes. Here, we evaluated NPM1 gene and protein expression in gastric tumors and in corresponding nonneoplastic gastric samples. Methods NPM1 protein expression was determined by Western blot in 17 pairs of gastric tumors and corresponding non-neoplastic gastric tissue. The protein immunoreactivity was observed in 12 tumor samples. mRNA expression was evaluated by reverse transcription quantitative polymerase chain reaction (RT-qPCR) in 22 pairs of gastric tumors and in matched nonneoplastic gastric tissue. Results NPM1 protein expression was significantly reduced in gastric cancer samples compared to matched non-neoplastic gastric samples (P = 0.019). The protein level of NPM1 was reduced at least 1.5-fold in 35% of tumors compared to paired non-neoplastic gastric tissue. However, NPM1 immunoreactivity was detected in neoplastic and non-neoplastic cells, including in intestinal metaplastic, gastritis and inflammatory cells. NPM1 was mainly expressed in nucleus and nucleolus subcellular compartments. The staining intensity and the percentage of immunoreactive cells varied among the studied cases. The NPM1 mRNA level was reduced at least 1.5-fold in 45.5% of samples and increased in 27.3% of samples. An inverse correlation between protein and mRNA expression was detected (r = -0.509, P = 0.037). Intestinal-type gastric cancer presented higher mRNA levels than diffuse-type (P = 0.026). However, reduced NPM1 protein expression was associated with intestinal-type gastric cancer compared to matched non-neoplastic gastric samples (P = 0.018). In addition, tumors from patients with known distant metastasis presented reduced NPM1 protein levels compared to tumors from patients without distant metastasis (P < 0.001). Conclusion Although the expression of NPM1 is heterogeneous in gastric tumors, our results suggest that NPM1 down-regulation may have a role in gastric carcinogenesis and may help in the selection of anticancer treatment strategies. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
9. Expression of PAFR as Part of a Prosurvival Response to Chemotherapy: A Novel Target for Combination Therapy in Melanoma.
- Author
-
Onuchic, Ana Claudia, Machado, Camila M. L., Saito, Renata F., Rios, Francisco J., Jancar, Sônia, and Chammas, Roger
- Subjects
MELANOMA treatment ,GENE expression ,CANCER chemotherapy ,COMBINATION drug therapy ,MACROPHAGES ,CISPLATIN ,CELLULAR signal transduction - Abstract
Melanoma cells express the platelet-activating factor receptor (PAFR) and, thus, respond to PAF, a bioactive lipid produced by both tumour cells and those in the tumour microenvironment such as macrophages. Here, we show that treatment of a human melanoma SKmel37 cell line with cisplatin led to increased expression of PAFR and its accumulation. In the presence of exogenous PAF, melanoma cells were significantly more resistant to cisplatin-induced cell death. Inhibition of PAFR-dependent signalling pathways by a PAFR antagonist (WEB2086) showed chemosensitisation of melanoma cells in vitro. Nude mice were inoculated with SKmel37 cells and treated with cisplatin and WEB2086. Animals treated with both agents showed significantly decreased tumour growth compared to the control group and groups treated with only one agent. PAFR accumulation and signalling are part of a prosurvival program of melanoma cells, therefore constituting a promising target for combination therapy for melanomas. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
10. Absence of galectin-3 does not affect the development of experimental tongue carcinomas in mice
- Author
-
de Faria, Paulo Rogério, Chammas, Roger, de Melo, Thaissa Lopes, Hsu, Daniel K., Liu, Fu-Tong, Nonogaki, Suely, Cardoso, Sérgio Vitorino, and Loyola, Adriano Mota
- Subjects
- *
LECTINS , *TONGUE cancer , *DYSPLASIA , *GENE expression , *CARCINOGENESIS , *IMMUNOHISTOCHEMISTRY , *LABORATORY mice , *GENETICS - Abstract
Abstract: Background: Galectin-3 is a lectin that presents pivotal roles in tumor biology and there are no studies evaluating their expression in dysplasias and carcinomas developed from tongue carcinogenesis models. Aims: To investigate the role of galectin-3 in the development of tongue carcinomas using a mouse model of oral carcinogenesis. Methods: Galectin-3-deficient (gal3−/−) and wild-type (gal3+/+) mice were challenged with 4-nitroquinoline-1-oxide in drinking water for 16weeks and killed at different times. Tongues were removed and the number of dysplasias and carcinomas was counted. An immunohistochemical study for galectin-3 was performed only in the tongue from gal3+/+ mice. Results: In both groups, a reduction of dysplasias and an increase of carcinomas from week 16 to week 32 (p>0.05) were observed. A predominance of high cytoplasmic and nuclear galectin-3 expression was observed in carcinomas (64.7%) and dysplasias (55.5%), respectively (p>0.05). The perilesional areas always presented a statistical cytoplasmic and nuclear galectin-3 overexpression. Conclusions: Absence of galectin-3 did not directly affect the process of carcinogenesis and a cytoplasm shift of galectin-3 seems to be associated with development of tongue carcinomas. [Copyright &y& Elsevier]
- Published
- 2011
- Full Text
- View/download PDF
11. NFAT1 transcription factor is central in the regulation of tissue microenvironment for tumor metastasis.
- Author
-
Werneck, Miriam, Vieira-de-Abreu, Adriana, Chammas, Roger, and Viola, João
- Subjects
ANIMAL models of metastasis ,CANCER immunology ,TRANSCRIPTION factors ,CELL transformation ,CANCER invasiveness ,TUMOR growth ,GENE expression ,LABORATORY mice - Abstract
Members of the nuclear factor of activated T cell (NFAT) family of transcription factors were originally described in T lymphocytes but later shown to be expressed in several immune and non-immune cell types. NFAT proteins can modulate cellular transformation intrinsically, and NFAT-deficient (NFAT1−/−) mice are indeed more susceptible to transformation than wild-type counterparts. However, the contribution of an NFAT1−/− microenvironment to tumor progression has not been studied. We have addressed this question by inoculating NFAT1−/− mice with B16F10 melanoma cells intravenously, an established model of tumor homing and growth. Surprisingly, NFAT1−/− animals sustained less tumor growth in the lungs after melanoma inoculation than wild-type counterparts. Even though melanoma cells equally colonize NFAT1−/− and wild-type lungs, tumors do not progress in the absence of NFAT1 expression. A massive mononuclear perivascular infiltrate and reduced expression of TGF-β in the absence of NFAT1 suggested a role for tumor-infiltrating immune cells and the cytokine milieu. However, these processes are independent of an IL-4-induced regulatory tumor microenvironment, since lack of this cytokine does not alter the phenotype in NFAT1−/− animals. Bone marrow chimera experiments meant to differentiate the contributions of stromal and infiltrating cells to tumor progression demonstrated that NFAT1-induced susceptibility to pulmonary tumor growth depends on NFAT1-expressing parenchyma rather than on bone marrow-derived cells. These results suggest an important role for NFAT1 in radio-resistant tumor-associated parenchyma, which is independent of the anti-tumor immune response and Th1 versus Th2 cytokine milieu established by the cancer cells, but able to promote site-specific tumor growth. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
12. Novel Primate-Specific Genes, RMEL 1, 2 and 3, with Highly Restricted Expression in Melanoma, Assessed by New Data Mining Tool.
- Author
-
Sousa, Josane F., Torrieri, Raul, Silva, Rodrigo R., Pereira, Cristiano G., Valente, Valeria, Torrieri, Erico, Peronni, Kamila C., Martins, Waleska, Muto, Nair, Francisco, Guilherme, Brohem, Carla Abdo, Carlotti Jr., Carlos G., Maria-Engler, Silvya S., Chammas, Roger, and Espreafico, Enilza M.
- Subjects
GENE expression ,MELANOMA ,DATA mining ,TUMOR markers ,CELL lines ,TUMOR suppressor genes ,MELANOCYTES ,BIOINFORMATICS ,CLUSTER analysis (Statistics) - Abstract
Melanoma is a highly aggressive and therapy resistant tumor for which the identification of specific markers and therapeutic targets is highly desirable. We describe here the development and use of a bioinformatic pipeline tool, made publicly available under the name of EST2TSE, for the in silico detection of candidate genes with tissue-specific expression. Using this tool we mined the human EST (Expressed Sequence Tag) database for sequences derived exclusively from melanoma. We found 29 UniGene clusters of multiple ESTs with the potential to predict novel genes with melanoma-specific expression. Using a diverse panel of human tissues and cell lines, we validated the expression of a subset of three previously uncharacterized genes (clusters Hs.295012, Hs.518391, and Hs.559350) to be highly restricted to melanoma/melanocytes and named them RMEL1, 2 and 3, respectively. Expression analysis in nevi, primary melanomas, and metastatic melanomas revealed RMEL1 as a novel melanocytic lineage-specific gene up-regulated during melanoma development. RMEL2 expression was restricted to melanoma tissues and glioblastoma. RMEL3 showed strong up-regulation in nevi and was lost in metastatic tumors. Interestingly, we found correlations of RMEL2 and RMEL3 expression with improved patient outcome, suggesting tumor and/or metastasis suppressor functions for these genes. The three genes are composed of multiple exons and map to 2q12.2, 1q25.3, and 5q11.2, respectively. They are well conserved throughout primates, but not other genomes, and were predicted as having no coding potential, although primate-conserved and human-specific short ORFs could be found. Hairpin RNA secondary structures were also predicted. Concluding, this work offers new melanoma-specific genes for future validation as prognostic markers or as targets for the development of therapeutic strategies to treat melanoma. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
13. Lack of Galectin-3 Drives Response to Paracoccidioides brasiliensis toward a Th2-Biased Immunity.
- Author
-
Ruas, Luciana Pereira, Bernardes, Emerson Soares, Fermino, Marise Lopes, de Oliveira, Leandro Licursi, Hsu, Daniel K., Fu-Tong Liu, Chammas, Roger, and Roque-Barreira, Maria-Cristina
- Subjects
CELLULAR immunity ,COMMUNICABLE disease treatment ,MYCOSES ,CYTOKINES ,NITRIC oxide ,MACROPHAGE activation ,IMMUNOREGULATION ,GENE expression ,IN vivo toxicity testing ,CLINICAL medicine research - Abstract
There is recent evidence that galectin-3 participates in immunity to infections, mostly by tuning cytokine production. We studied the balance of Th1/Th2 responses to P. brasiliensis experimental infection in the absence of galectin-3. The intermediate resistance to the fungal infection presented by C57BL/6 mice, associated with the development of a mixed type of immunity, was replaced with susceptibility to infection and a Th2-polarized immune response, in galectin-3-deficient (gal32/2) mice. Such a response was associated with defective inflammatory and delayed type hypersensitivity (DTH) reactions, high IL-4 and GATA-3 expression and low nitric oxide production in the organs of infected animals. Gal3
-/- macrophages exhibited higher TLR2 transcript levels and IL-10 production compared to wild-type macrophages after stimulation with P. brasiliensis antigens. We hypothesize that, during an in vivo P. brasiliensis infection, galectin-3 exerts its tuning role on immunity by interfering with the generation of regulatory macrophages, thus hindering the consequent Th2- polarized type of response. [ABSTRACT FROM AUTHOR]- Published
- 2009
- Full Text
- View/download PDF
14. Expression of the selectable marker gene bsrm in BALB/MK cells induces apoptosis by overproduction of hydrogen peroxide.
- Author
-
Takeshita, Daniela, Bento, Fernanda Mara, Chammas, Roger, Belizário, José Ernesto, Carmona, Adriana Karaoglanovic, Konno, Katsuhiro, De Melo, Robson Lopes, Molina, Gustavo, Lisboa, Bianca Cristina Garcia, and Sang Won Han
- Subjects
GENE expression ,GENETIC transduction ,KERATINOCYTES ,CELL lines ,CELL death ,HYDROGEN peroxide ,APOPTOSIS - Abstract
Copyright of Biochemistry & Cell Biology is the property of Canadian Science Publishing and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2007
- Full Text
- View/download PDF
15. Effects of Aerobic Exercise Training on MyomiRs Expression in Cachectic and Non-Cachectic Cancer Mice.
- Author
-
Gomes, João Lucas Penteado, Tobias, Gabriel Cardial, Fernandes, Tiago, Silveira, André Casanova, Negrão, Carlos Eduardo, Chammas, Roger, Brum, Patrícia Chakur, and Oliveira, Edilamar Menezes
- Subjects
COLON tumors ,PROTEIN kinases ,AEROBIC exercises ,SKELETAL muscle ,ANIMAL experimentation ,MICRORNA ,GENE expression ,DESCRIPTIVE statistics ,CACHEXIA ,TUMOR markers ,MICE ,BREAST tumors - Abstract
Simple Summary: Muscle wasting is a symptom of the cancer cachexia closely related to the imbalance between protein synthesis and degradation. MyomiRs are small RNA molecules that do not encode proteins and have the function of regulating protein-coding genes, and in this way, myomiRs can regulate the homeostasis of skeletal muscle cells submitted to physiological or pathological stimulus. Aerobic exercise training (AET) is a nonpharmacological adjuvant treatment to prevent cancer cachexia, improving the patient's quality of life. MyomiRs are modulated by cancer and AET, as well. Thus, we propose to investigate the effects promoted by AET on circulating and skeletal muscle myomiRs in cachectic and non-cachectic cancer mice. Exercise is a promising therapy for cancer-associated muscle wasting, revealing the importance to understand the molecular mechanisms involved to preserve muscle mass. We investigated the effects of AET on myomiRs expression in the skeletal muscle and serum of colon cachectic (CT26) and breast non-cachectic (MMTV-PyMT) cancer mice models. Colon cancer decreased microRNA-486 expression, increasing PTEN in tibialis anterior muscle (TA), decreasing the PI3K/mTOR protein pathway, body and muscle wasting, fibers' cross-sectional area and muscle dysfunction, that were not preserved by AET. In contrast, breast cancer decreased those muscle functions, but were preserved by AET. In circulation, the downregulation of microRNA-486 and -206 in colon cancer, and the downregulation of microRNA-486 and upregulation of microRNA-206 expression in breast cancer might be good cancer serum biomarkers. Since the microRNA-206 is skeletal muscle specific, their expression was increased in the TA, serum and tumor in MMTV, suggesting a communication among these three compartments. The AET prevents these effects on microRNA-206, but not on microRNA-486 in MMTV. In conclusion, cancer induced a downregulation of microRNA-486 expression in TA and serum of CT26 and MMTV mice and these effects were not prevented by AET; however, to MMTV, the trained muscle function was preserved, probably sustained by the downregulation of microRNA-206 expression. Serum microRNA-206 is a potential biomarker for colon (decreased) and breast (increased) cancer to monitor the disease evolution and the effects promoted by the AET. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
16. Expression data of FOS and JUN genes and FTIR spectra provide diagnosis of thyroid carcinoma.
- Author
-
da Silva Queiroz, João Paulo, Pupin, Breno, Bhattacharjee, Tanmoy Tapobrata, Uno, Miyuki, Chammas, Roger, Vamondes Kulcsar, Marco Aurélio, and de Azevedo Canevari, Renata
- Subjects
- *
FOS oncogenes , *GENE expression , *THYROID cancer , *ATTENUATED total reflectance , *BENIGN tumors , *MOLECULAR biology - Abstract
A. Relative gene expression of the FOS and JUN transcripts between malign tumors (PTC, FTC) with non-neoplastic tissues (NT). B. PCA Analysis plots: comparison between PTC, FTC, BT and NT. Differential expression of FOS and JUN genes were observed in differentiated thyroid carcinomas (PTC and FTC) in comparison to both normal tissues and benign tumors. These genes present themselves as potential to be used as a diagnostic marker in differentiated thyroid carcinomas. ATR-FTIR after multivariate analysis could identify the difficult to diagnose FTC with 93 % efficiency. It is concluded that gene expression and ATR-FTIR spectroscopy analysis are highly sensitive technique to distinguish different thyroid lesions. [Display omitted] • FOS and JUN genes are potential diagnostic marker in thyroid carcinomas. • ATR-FTIR could identify thyroid carcinoma with high efficiency. • ATR-FTIR and qRT-PCR analysis are highly sensitive to distinguish thyroid lesions. We explore the feasibility of using FOS and JUN gene expression and ATR-FTIR for diagnosis of thyroid cancer. For the study, 38 samples (6 non-neoplastic (NN), 10 papillary thyroid carcinoma (PTC), 7 follicular thyroid carcinoma (FTC), and 15 benign tumors (BT) were subjected to RNA extraction followed by quantitative real time PCR (qRT-PCR) and 30 samples (5 NN, 9 PTC, 5 FTC, and 11 BT) were used for Attenuated Total Reflectance – Fourier Transform Infrared (ATR-FTIR) followed by multivariate analysis. Of the above, 20 samples were used for both gene expression and ATR-FTIR studies. We found FOS and JUN expression in malignant tumor samples to be significantly lower than NN and benign. ATR-FIR after multivariate analysis could identify the difficult to diagnose FTC with 93 % efficiency. Overall, results suggest the diagnostic potential of molecular biology techniques combined with ATR-FTIR spectroscopy in differentiated thyroid carcinomas (PTC and FTC) and BT. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
17. De novo galectin-3 expression influences the response of melanoma cells to isatin-Schiff base copper (II) complex-induced oxidative stimulus.
- Author
-
Borges, Beatriz E., Teixeira, Verônica R., Appel, Marcia H., Steclan, Chelin A., Rigo, Fernanda, Filipak Neto, Francisco, da Costa Ferreira, Ana M., Chammas, Roger, Zanata, Silvio M., and Nakao, Lia S.
- Subjects
- *
GALECTINS , *GENE expression , *MELANOMA , *ISATIN , *SCHIFF bases , *APOPTOSIS , *COPPER compounds , *METAL complexes , *EXTRACELLULAR matrix - Abstract
Highlights: [•] Galectin-3 expression induces apoptosis in melanoma cells treated with [Cu(isaepy)]. [•] The mechanisms involved in melanoma apoptosis include ROS formation and p38 activation. [•] The isatin-Schiff base-copper (II) complex may be envisaged as a possible anti-melanoma strategy, particularly for melanomas that express galectin-3. [Copyright &y& Elsevier]
- Published
- 2013
- Full Text
- View/download PDF
18. Fibronectin expression is decreased in metastatic renal cell carcinoma following endostatin gene therapy
- Author
-
Chaves, Karen Cristina Barbosa, Turaça, Lauro Thiago, Pesquero, João Bosco, Mennecier, Gregory, Dagli, Maria Lucia Zaidan, Chammas, Roger, Schor, Nestor, and Bellini, Maria Helena
- Subjects
- *
FIBRONECTINS , *GENE expression , *GENE therapy , *ENDOSTATIN , *CANCER cells , *HOMEOSTASIS , *CANCER invasiveness , *RENAL cell carcinoma - Abstract
Abstract: Tumor cells induce the disruption of homeostasis between cellular and extracellular compartments to favor tumor progression. The expression of fibronectin (FN), a matrix glycoprotein, is increased in several carcinoma cell types, including renal cell carcinoma (RCC). RCC are highly vascularized tumors and are often amenable to antiangiogenic therapy. Endostatin (ES) is a fragment of collagen XVIII that possesses antiangiogenic activity. In this study, we examined the modulation of FN gene expression by ES gene therapy in a murine metastatic renal cell carcinoma (mRCC) model. Balb/C mice bearing Renca cells were treated with NIH/3T3-LXSN cells or NIH/3T3-LendSN cells. At the end of the experiment, the ES serum levels were measured, and the FN gene expression was assessed using real-time PCR. The tissue FN was evaluated by western blotting and by immunofluorescence analysis. The ES serum levels in treated mice were higher than those in the control group (P <0.05). ES treatment led to significant decreases at the FN mRNA (P <0.001) and protein levels (P <0.01). Here, we demonstrate the ES antitumor effect that is mediated by down-regulation of FN expression in mRCC. [Copyright &y& Elsevier]
- Published
- 2012
- Full Text
- View/download PDF
19. ATR-FTIR spectroscopy and CDKN1C gene expression in the prediction of lymph nodes metastases in papillary thyroid carcinoma.
- Author
-
da Silva, Raissa Monteiro, Pupin, Breno, Bhattacharjee, Tanmoy Tapobrata, Vamondes Kulcsar, Marco Aurélio, Uno, Miyuki, Chammas, Roger, and de Azevedo Canevari, Renata
- Subjects
- *
BRAF genes , *LYMPH nodes , *PAPILLARY carcinoma , *THYROID cancer , *ATTENUATED total reflectance , *GENE expression , *THYROID hormones - Abstract
Thyroid cancer has become in recent years the most common endocrine malignancy. Among its different types, papillary thyroid carcinoma (PTC) has the highest incidence. PTC is slow growing, but shows a high rate of lymph node metastasis. Tissue biochemical characterization and identification of molecular markers can facilitate stratification of patients into those requiring surgical assessment of lymph nodes and patients for whom this surgical procedure is unnecessary; thus, leading to a more accurate prognosis. To this end, the study aimed to predict lymph node metastasis by Attenuated Total Reflectance - Fourier transform infrared (ATR-FTIR) spectroscopy of primary PTC tumors. Another objective of the study was to determine whether CCNA1, CDKN1C, FOS, HSPA5, JUN, KSR1, MAP2K6, MAPK8IP2 and SFN gene expression in primary PTC tumors could be used as predictive markers of lymph node metastasis. Three PTC with lymph node involvement (PTC+), six PTC without lymph node involvement (PTC-), and five normal (N) thyroid tissues were used for FTIR spectroscopy analysis; while 18 PTC+, 17 PTC-, and 6 N samples were used for molecular analysis by real-time quantitative PCR (RT-qPCR). FTIR spectral analysis revealed changes in phosphate groups possibly associated with nucleic acid (1236 cm−1), and protein/lipids (1452, 2924, 3821 cm−1) in PTC + compared to PTC-, and multivariate analysis could distinguish the two groups. Molecular analysis showed significant increase in CDKN1C gene expression in PTC + compared to PTC-. Being a cell growth regulator, increased CDKN1C provides some supporting evidence to the FTIR spectroscopy based finding of increased nucleic acids in PTC+. Thus, the study suggests the possibility of using FTIR spectroscopy and CDKN1C expression for predicting metastasis using primary tumor alone. Image 1 • ATR-FTIR spectroscopy is a promising method to distinguish metastatic from non-metastatic thyroid papillary primary tumors. • CDKN1C gene has a potential predictive in determination lymph node metastases in papillary thyroid carcinoma. • Gene expression analysis and ATR-FTIR spectroscopy are sensitive for detection lymph node metastases in thyroid tumors. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
20. Effect Of Aerobic Physical Training On The Expression Of Muscular Myomirs In Experimental Models Of Cancer.: 2642 Board #8 June 1 3:15 PM - 5:15 PM.
- Author
-
Gomes, João LP, Tobias, Gabriel C., Fernandes, Tiago, Silveira, Andre C., Brum, Patricia C., Chammas, Roger, and Oliveira, Edilamar M.
- Subjects
- *
CONFERENCES & conventions , *EXERCISE physiology , *GENE expression , *TUMORS , *SKELETAL muscle - Published
- 2018
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.