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447 results on '"ChIP‐Seq"'

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1. Dynamics of HOX gene expression and regulation in adipocyte development.

2. The RUNX2 cistrome in osteoblasts: characterization, down-regulation following differentiation, and relationship to gene expression.

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3. Transcriptome and DNA methylation profiling during the NSN to SN transition in mouse oocytes.

4. Genome-Wide Expression Profiling and Phenotypic Analysis of Downstream Targets Identify the Fox Transcription Factor Jumeau as a Master Regulator of Cardiac Progenitor Cell Division.

5. ChIP-seq and structural analyses delineating the regulatory mechanism of master regulator EsrB in Edwardsiella piscicida.

6. Fluoride Alters Gene Expression via Histone H3K27 Acetylation in Ameloblast-like LS8 Cells.

7. Deciphering genetic and nongenetic factors underlying tumour dormancy: insights from multiomics analysis of two syngeneic MRD models of melanoma and leukemia.

8. Neph1 is required for neurite branching and is negatively regulated by the PRRXL1 homeodomain factor in the developing spinal cord dorsal horn.

9. aPEAch: Automated Pipeline for End-to-End Analysis of Epigenomic and Transcriptomic Data.

10. Shared and distinct interactions of type 1 and type 2 Epstein-Barr Nuclear Antigen 2 with the human genome.

11. Protocol for generating customizable and reproducible plots of sequencing coverage data using the seqNdisplayR package

12. CIC-DUX4 Chromatin Profiling Reveals New Epigenetic Dependencies and Actionable Therapeutic Targets in CIC-Rearranged Sarcomas.

13. Ascertainment Bias in the Genomic Test of Positive Selection on Regulatory Sequences.

14. Seq2science: an end-to-end workflow for functional genomics analysis.

15. Genome-Wide Characterization of TAZ Binding Sites in Mammary Epithelial Cells.

16. A Micro-evolutionary Change in Target Binding Sites as a Key Determinant of Ultrabithorax Function in Drosophila.

17. Integrative analyses of RNA-seq and ChIP-seq Reveal MITF as a Target Gene of TFPI-2 in MDA231 Cells.

18. Elucidating disease-associated mechanisms triggered by pollutants via the epigenetic landscape using large-scale ChIP-Seq data.

19. xcore: an R package for inference of gene expression regulators

20. Transcriptome profiling of the Caenorhabditis elegans intestine reveals that ELT-2 negatively and positively regulates intestinal gene expression within the context of a gene regulatory network.

21. Analysis of super-enhancer using machine learning and its application to medical biology.

22. Adolescent binge ethanol impacts H3K36me3 regulation of synaptic genes.

23. GRHL2-controlled gene expression networks in luminal breast cancer.

24. xcore: an R package for inference of gene expression regulators.

25. MITF Contributes to the Body Color Differentiation of Sea Cucumbers Apostichopus japonicus through Expression Differences and Regulation of Downstream Genes.

26. Genome-wide distribution of histone trimethylation reveals a global impact of bisphenol A on telomeric binding proteins and histone acetyltransferase factors: a pilot study with human and in vitro data.

27. Genetic variation in histone modifications and gene expression identifies regulatory variants in the mammary gland of cattle.

28. Statistical estimates of multiple transcription factors binding in the model plant genomes based on ChIP-seq data

29. Differential H3K9me2 heterochromatin levels and concordant mRNA expression in postmortem brain tissue of individuals with schizophrenia, bipolar, and controls

30. CHIPIN: ChIP-seq inter-sample normalization based on signal invariance across transcriptionally constant genes

31. The homeodomain (PHD) protein, PdbPHD3, confers salt tolerance by regulating squamosa promoter binding protein PdbSBP3 in Populus davidiana × P. bolleana.

32. Differences in H3K4me3 and chromatin accessibility contribute to altered T‐cell receptor signaling in neonatal naïve CD4 T cells.

33. A comparative investigation on H3K27ac enhancer activities in the brain and liver tissues between wild boars and domesticated pigs.

34. Predicting which genes will respond to transcription factor perturbations.

35. Cat8 Response to Nutritional Changes and Interaction With Ehrlich Pathway Related Factors.

36. Bibliometric review of ATAC-Seq and its application in gene expression.

37. Smarcb1 Loss Results in a Deregulation of esBAF Binding and Impacts the Expression of Neurodevelopmental Genes.

38. FindIT2: an R/Bioconductor package to identify influential transcription factor and targets based on multi-omics data.

39. TADreg: a versatile regression framework for TAD identification, differential analysis and rearranged 3D genome prediction.

40. Statistical estimates of multiple transcription factors binding in the model plant genomes based on ChIP-seq data.

41. Chromatin

42. Genome-wide localization of histone variants in Toxoplasma gondii implicates variant exchange in stage-specific gene expression.

43. Changes in histone H3 lysine 4 trimethylation in Hashimoto's thyroiditis.

44. Profiling of H3K4me3 and H3K27me3 and Their Roles in Gene Subfunctionalization in Allotetraploid Cotton.

45. SMAD4 target genes are part of a transcriptional network that integrates the response to BMP and SHH signaling during early limb bud patterning.

47. Profiling of H3K4me3 and H3K27me3 and Their Roles in Gene Subfunctionalization in Allotetraploid Cotton

48. The Herpes Simplex Virus 1 Protein ICP4 Acts as both an Activator and a Repressor of Host Genome Transcription during Infection.

49. Identification of universal and cell-type specific p53 DNA binding

50. H3K4me2 functions as a repressive epigenetic mark in plants