5 results on '"Saberi, Samaneh"'
Search Results
2. A Bayesian latent class extension of naive Bayesian classifier and its application to the classification of gastric cancer patients
- Author
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Gohari, Kimiya, Kazemnejad, Anoshirvan, Mohammadi, Marjan, Eskandari, Farzad, Saberi, Samaneh, Esmaieli, Maryam, and Sheidaei, Ali
- Published
- 2023
- Full Text
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3. Mitochondrial DNA Copy Number Variations and Serum Pepsinogen Levels for Risk Assessment in Gastric Cancer
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Alikhani, Mehdi, Saberi, Samaneh, Esmaeili, Maryam, Michel, Valérie, Tashakoripour, Mohammad, Abdirad, Afshin, Aghakhani, Arezoo, Eybpoosh, Sana, Vosough, Massoud, Mohagheghi, Mohammad Ali, Eshagh Hosseini, Mahmoud, Touati, Eliette, Mohammadi, Marjan, Institut Pasteur d'Iran, Réseau International des Instituts Pasteur (RIIP), Pathogenèse de Helicobacter / Helicobacter Pathogenesis, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Tehran University of Medical Sciences (TUMS), Academic Center for Education, Culture and Research (ACECR), This project was supported by an ACIP (Pasteur International Concerted Action) grant (ACIP2015-10) from Institut Pasteur Paris, and and Grant #833 from Pasteur Institute of Iran, as partial fulfillment of MA Ph.D. dissertation (code: TP-9347).
- Subjects
Male ,serum pepsinogen ,DNA Copy Number Variations ,Full Length ,Stomach neoplasms ,DNA copy number variation ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,MESH: Pepsinogen A ,MESH: Risk Assessment ,DNA, Mitochondrial ,Risk Assessment ,Pepsinogen A ,Humans ,Lymphocytes ,MESH: Humans ,MESH: Middle Aged ,Helicobacter pylori ,gastric cancer ,MESH: DNA, Mitochondrial ,MESH: Stomach Neoplasms ,Middle Aged ,MESH: ROC Curve ,Mitochondrial DNA ,MESH: Male ,mitochondrial DNA copy number ,ROC Curve ,Female ,MESH: DNA Copy Number Variations ,MESH: Lymphocytes ,MESH: Female ,Biomarkers - Abstract
Variations in mitochondrial DNA copy number (mtDNA-CN) of peripheral blood leukocytes (PBLs), as a potential biomarker for gastric cancer (GC) screening has currently been subject to controversy. Herein, we have assessed its efficiency in GC screening, in parallel and in combination with serum pepsinogen (sPG) I/II ratio, as an established indicator of gastric atrophy.The study population included GC (n = 53) and non-GC (n = 207) dyspeptic patients. The non-GC group was histologically categorized into CG (n = 104) and NM (n = 103) subgroups. The MtDNA-CN of PBLs was measured by quantitative real-time PCR. The sPG I and II levels and anti-H. pylori serum IgG were measured by ELISA.The mtDNA-CN was found significantly higher in GC vs. non-GC (OR = 3.0; 95% CI = 1.4, 6.4) subjects. Conversely, GC patients had significantly lower sPG I/II ratio than the non-GC (OR = 3.2; CI = 1.4, 7.2) subjects. The combination of these two biomarkers yielded a dramatic amplification of the odds of GC risk in double-positive (high mtDNA-CN-low sPGI/II) subjects, in reference to double-negatives (low mtDNA-CN-high sPGI/II), when assessed against non-GC (OR = 27.1; CI = 5.0, 147.3), CG (OR = 13.1; CI = 2.4, 72.6), or NM (OR = 49.5; CI = 7.9, 311.6) groups.The combination of these two biomarkers, namely mtDNA-CN in PBLs and serum PG I/II ratio, drastically enhanced the efficiency of GC risk assessment, which calls for further validations.
- Published
- 2021
- Full Text
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4. Multiplex serology of Helicobacter pylori antigens in detection of current infection and atrophic gastritis - A simple and cost-efficient method.
- Author
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Shafaie, Ebrahim, Saberi, Samaneh, Esmaeili, Maryam, Karimi, Zeynab, Najafi, Saeed, Tashakoripoor, Mohammad, Abdirad, Afshin, Hosseini, Mahmoud Eshagh, Mohagheghi, Mohammad Ali, Khalaj, Vahid, and Mohammadi, Marjan
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HELICOBACTER pylori , *IMMUNE response , *ANTIGEN-antibody reactions , *INFECTION , *ATROPHIC gastritis - Abstract
Introduction Helicobacter pylori express a large array of antigens, each of which is duly responsible for successful colonization and pathogenesis. Here, we have studied host serum antibody responses to four of its immunodominant antigens in association with the infection status and the resulting clinical outcomes. Methods For this purpose, four individual H. pylori proteins (UreB, CagA, Tip-α and HP0175) were produced in recombinant forms. Serum antibody responses of 246 (75 GC and 171 NUD) patients, against the above antigens, were evaluated by multiplex immunoblotting. The associations between the resulting data and the infection status, as well as clinical outcomes were evaluated using logistic regression models. Results Serum antibodies to all four recombinant antigens increased the chances of detecting screening ELISA-positive subjects, in an escalating dose-dependent manner, ranging from 2.6 (1.5–4.7) for HP0175 to 14.3 for UreB (4.3–50.7), exhibiting the lowest and highest odds ratios, respectively ( P Adj ≤ 0.001), such that 98.2% of the subjects with antibodies to all four antigens, were also positive by the screening ELISA ( P < 0.0001). Among the screening ELISA-positive subjects, the three antigens of CagA, Tip-α, and HP0175 were able to segregate current from past H. pylori infection ( P < 0.05). Accordingly, subjects with antibodies to one or more antigen(s) were at 5.4 (95% CI: 1.8–16.4) folds increased chances of having current infection, as compared to triple negatives ( P Adj = 0.003). In reference to the clinical outcomes, those with serum antibodies to CagA were more prevalent among gastric cancer, as compared to NUD patients (OR Adj : 5.4, 95% CI: 2.4–12.2, P Adj < 0.0001). When NUD patients were categorized according to their histopathologic status, multiple antigen analysis revealed that subjects with serum antibodies to one or more of the 3 current infection-positive antigens (CagA, Tip-α, and HP0175) were at 9.7 (95% CI: 2.1–44.9, P = 0.004) folds increased risk of atrophic gastritis, in reference to triple negatives. Conclusion The non-invasive multiplex serology assay, presented here, was able to not only detect subjects with current H. pylori infection, it could also screen dyspeptic patients for the presence of gastric atrophy. This simple and cost-efficient method can supplement routine screening ELISAs, to increase the chances of detecting current infections as well as atrophic gastritis. [ABSTRACT FROM AUTHOR]
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- 2018
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5. Infection with a hypervirulent strain of Helicobacter pylori primes gastric cells toward intestinal transdifferentiation.
- Author
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Saberi, Samaneh, Esmaeili, Maryam, Tashakoripour, Mohammad, Eshagh Hosseini, Mahmoud, Baharvand, Hossein, and Mohammadi, Marjan
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HELICOBACTER pylori , *GENE regulatory networks , *TRANSCRIPTION factors , *INTESTINES , *STOMACH cancer - Abstract
Intestinal metaplasia, gastric-to-intestinal transdifferentiation, occurs as a result of the misexpression of certain regulatory factors, leading to genetic reprogramming. Here, we have evaluated the H. pylori -induced expression patterns of these candidate genes. The expression levels of 1) tissue-specific transcription factors (RUNX3, KLF5, SOX2, SALL4, CDX1 and CDX 2), 2) stemness factors (TNFRSF19, LGR5, VIL1) and 3) tissue-specific mucins (MUC5AC, MUC2) were evaluated by quantitative real-time PCR in gastric primary cells (GPCs), in parallel with two gastric cancer (MKN45 and AGS) cell lines, up to 96h following H. pylori infection. Following H. pylori infection of GPCs, RUNX3 declined at 24h post infection (−6.2 ± 0.3) and remained downregulated for up to 96h. Subsequently, overexpression of self-renewal and pluripotency transcription factors, KLF5 (3.6 ± 0.2), SOX2 (7.6 ± 0.5) and SALL4 (4.3 ± 0.2) occurred. The expression of TNFRSF19 and LGR5 , demonstrated opposing trends, with an early rise of the former (4.5 ± 0.3) at 8h, and a simultaneous fall of the latter (- 1.8 ± 0.5). This trend was reversed at 96h, with the decline in TNFRSF19 (−5.5 ± 0.2), and escalation of LGR5 (2.6 ± 0.2) and VIL1 (1.8 ± 0.3). Ultimately, CDX1 and CDX2 were upregulated by 1.9 and 4.7-fold, respectively. The above scenario was, variably observed in MKN45 and AGS cells. Our data suggests an interdependent gene regulatory network, induced by H. pylori infection. This interaction begins with the downregulation of RUNX3 , upregulation of self-renewal and pluripotency transcription factors, KLF5 , SOX2 and SALL4 , leading to the downregulation of TNFRSF19 , upregulation of LGR5 and aberrant expression of intestine-specific transcription factors, potentially facilitating the process of gastric-to-intestinal transdifferentiation. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
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